Wall clock time and date at job start Mon Mar 30 2020 00:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46900 * 110.99578 * 306.04553 * 12 2 1 14 14 C 1.46902 * 110.99986 * 69.99637 * 12 2 1 15 15 N 1.46500 * 109.46726 * 155.00558 * 14 12 2 16 16 C 1.35058 * 125.56990 * 90.02449 * 15 14 12 17 17 O 1.21301 * 127.28262 * 359.94085 * 16 15 14 18 18 C 1.49982 * 105.43446 * 179.97438 * 16 15 14 19 19 O 1.21294 * 127.28606 * 179.97438 * 18 16 15 20 20 N 1.35062 * 105.42830 * 359.97438 * 18 16 15 21 21 C 1.46504 * 125.56648 * 180.02562 * 20 18 16 22 22 C 1.34277 * 108.86727 * 359.77325 * 20 18 16 23 23 O 1.21484 * 124.29652 * 180.24359 * 22 20 18 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47375 * 59.99750 * 13 12 2 29 29 H 1.09001 * 109.47293 * 180.02562 * 13 12 2 30 30 H 1.09003 * 109.47189 * 300.00178 * 13 12 2 31 31 H 1.08998 * 109.46992 * 275.00024 * 14 12 2 32 32 H 1.08997 * 109.46767 * 35.00442 * 14 12 2 33 33 H 1.08998 * 109.47030 * 359.97438 * 21 20 18 34 34 H 1.08999 * 109.47051 * 119.97381 * 21 20 18 35 35 H 1.08998 * 109.47058 * 239.97462 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7529 0.0974 -2.4091 15 7 2.7156 -0.2662 -3.4518 16 6 2.5476 -1.2419 -4.3704 17 8 1.5912 -1.9776 -4.4945 18 6 3.7942 -1.2240 -5.2042 19 8 4.0592 -1.9420 -6.1452 20 7 4.5593 -0.2393 -4.6855 21 6 5.8831 0.1573 -5.1721 22 6 3.9063 0.3205 -3.6544 23 8 4.3391 1.2390 -2.9874 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 0.3491 -1.9548 -1.3694 29 1 1.8140 -2.5260 -2.2042 30 1 1.7059 -2.6220 -0.4303 31 1 0.7417 -0.1072 -2.7609 32 1 1.8499 1.1584 -2.1789 33 1 6.1598 -0.4669 -6.0217 34 1 5.8584 1.2021 -5.4815 35 1 6.6158 0.0316 -4.3750 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103460933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:54 Heat of formation + Delta-G solvation = -35.087828 kcal Electronic energy + Delta-G solvation = -21303.861572 eV Core-core repulsion = 17918.951453 eV Total energy + Delta-G solvation = -3384.910119 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.26841 -39.21890 -38.97666 -37.27415 -36.37392 -34.89763 -32.67746 -29.69483 -28.38664 -26.53405 -25.56500 -25.32005 -23.83433 -21.99988 -21.32760 -19.57025 -17.91336 -17.68917 -17.08427 -16.55515 -16.28624 -15.61924 -15.32023 -15.19227 -14.75186 -14.56532 -14.09722 -13.76595 -13.34507 -13.22293 -12.94400 -12.73541 -12.59553 -11.70330 -11.38047 -11.26443 -10.99333 -10.91843 -10.81347 -10.70599 -10.29094 -10.16058 -10.15364 -10.06994 -9.80063 -9.03494 -8.45618 -7.53359 -6.08216 -4.12353 0.26729 1.80587 2.07663 2.47286 2.65767 3.29992 3.34375 3.37447 3.86481 4.35599 4.50187 4.81479 5.03681 5.04380 5.13336 5.24384 5.33108 5.42133 5.62289 5.69412 6.01995 6.22787 6.48756 6.54828 6.66144 6.72849 6.78032 6.91502 7.14656 7.21696 7.53453 7.61476 7.72271 7.92236 8.20043 8.39078 8.91483 9.52728 10.98883 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.027982 B = 0.005164 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.417909 B = 5421.137388 C = 5727.806901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.218 3.782 3 H 0.046 0.954 4 C -0.502 4.502 5 H 0.062 0.938 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.546 5.546 13 C 0.032 3.968 14 C 0.281 3.719 15 N -0.558 5.558 16 C 0.507 3.493 17 O -0.416 6.416 18 C 0.509 3.491 19 O -0.425 6.425 20 N -0.579 5.579 21 C 0.091 3.909 22 C 0.711 3.289 23 O -0.475 6.475 24 H 0.093 0.907 25 H 0.036 0.964 26 H 0.007 0.993 27 H 0.262 0.738 28 H 0.029 0.971 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.027 -0.318 -13.983 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.112 3.888 3 H 0.064 0.936 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.271 5.271 13 C -0.116 4.116 14 C 0.071 3.929 15 N -0.308 5.308 16 C 0.287 3.713 17 O -0.281 6.281 18 C 0.290 3.710 19 O -0.291 6.291 20 N -0.329 5.329 21 C -0.049 4.049 22 C 0.413 3.587 23 O -0.342 6.342 24 H 0.111 0.889 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.307 -0.506 -13.950 14.934 hybrid contribution -0.462 -0.360 0.854 1.035 sum 4.846 -0.865 -13.097 13.991 Atomic orbital electron populations 1.22478 1.00165 0.99879 1.00875 1.19364 0.90019 0.94597 0.84779 0.93641 1.20979 1.30990 1.12695 0.89354 0.91945 1.24901 0.95100 0.95094 0.99007 1.69854 1.36764 1.22859 1.23740 0.86537 0.79248 0.79563 0.81915 1.20215 1.21326 1.20335 1.61982 1.59750 1.03221 1.02160 1.22337 0.97118 0.90879 1.01272 1.22227 0.87524 0.99280 0.83820 1.47186 1.19213 1.33192 1.31207 1.20829 0.88040 0.80716 0.81738 1.90826 1.31750 1.37650 1.67838 1.21053 0.85723 0.80150 0.84090 1.90809 1.74693 1.39600 1.23993 1.46604 1.20439 1.34198 1.31705 1.21916 0.79440 1.02290 1.01261 1.15925 0.80409 0.82305 0.80043 1.91040 1.68490 1.26957 1.47707 0.88868 0.94518 0.97408 0.92790 0.95236 0.94011 0.90374 0.90712 0.87246 0.88530 0.89824 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.92 8.26 37.16 0.31 -3.61 16 2 C 0.22 5.16 2.27 -68.86 -0.16 5.00 16 3 H 0.05 1.18 7.80 -51.93 -0.40 0.78 16 4 C -0.50 -13.22 7.97 -34.44 -0.27 -13.50 16 5 H 0.06 1.66 7.10 -52.49 -0.37 1.29 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -24.52 11.32 55.43 0.63 -23.89 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.55 -11.15 4.80 -240.20 -1.15 -12.30 16 13 C 0.03 0.61 8.66 60.06 0.52 1.14 16 14 C 0.28 4.77 4.90 -63.31 -0.31 4.46 16 15 N -0.56 -8.51 2.87 -124.52 -0.36 -8.87 16 16 C 0.51 7.42 7.55 -11.21 -0.08 7.34 16 17 O -0.42 -6.85 16.73 5.54 0.09 -6.76 16 18 C 0.51 6.59 8.31 -11.20 -0.09 6.50 16 19 O -0.43 -6.04 17.65 5.55 0.10 -5.94 16 20 N -0.58 -6.79 3.06 -128.66 -0.39 -7.19 16 21 C 0.09 0.70 10.95 59.85 0.66 1.36 16 22 C 0.71 10.42 8.32 -87.81 -0.73 9.69 16 23 O -0.47 -8.24 17.38 5.38 0.09 -8.15 16 24 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 25 H 0.04 0.80 6.33 -51.93 -0.33 0.47 16 26 H 0.01 0.14 7.31 -51.93 -0.38 -0.24 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.03 0.55 6.20 -51.93 -0.32 0.23 16 29 H 0.04 0.75 6.05 -51.93 -0.31 0.43 16 30 H 0.08 1.59 6.86 -51.93 -0.36 1.24 16 31 H 0.08 1.19 7.57 -51.93 -0.39 0.79 16 32 H 0.11 1.84 7.47 -51.93 -0.39 1.46 16 33 H 0.10 0.60 7.76 -51.93 -0.40 0.19 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 298.28 15.07 4.50 4.50 Total: -1.00 -29.82 298.28 -5.74 -35.56 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -3.96 Total: -2.73 kcal Atomic # 6 Polarization: 20.14 SS G_CDS: -0.26 Total: 19.88 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -1.28 Total: -52.25 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.28 Total: -20.85 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.82 -5.74 -35.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.472 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds