Wall clock time and date at job start Mon Mar 30 2020 00:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99890 * 2 1 4 4 C 1.53000 * 109.46994 * 179.97438 * 3 2 1 5 5 N 1.46894 * 109.47469 * 67.03016 * 4 3 2 6 6 C 1.46901 * 111.00051 * 289.93916 * 5 4 3 7 7 C 1.50700 * 109.47117 * 299.65731 * 6 5 4 8 8 H 1.07998 * 119.99604 * 354.88227 * 7 6 5 9 9 C 1.37873 * 120.00479 * 174.88296 * 7 6 5 10 10 N 1.31524 * 119.99407 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00504 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47041 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46927 * 119.99974 * 11 9 7 14 14 H 1.48497 * 109.47475 * 240.00058 * 11 9 7 15 15 C 1.46904 * 110.99978 * 53.88843 * 5 4 3 16 16 C 1.53003 * 109.46793 * 66.04833 * 15 5 4 17 17 C 1.50706 * 109.46936 * 179.97438 * 16 15 5 18 18 C 1.33390 * 125.19597 * 90.00385 * 17 16 15 19 19 C 1.38430 * 114.91756 * 179.97438 * 18 17 16 20 20 C 1.33391 * 114.92005 * 359.97438 * 19 18 17 21 21 S 1.75875 * 125.20462 * 269.69413 * 17 16 15 22 22 H 1.09003 * 109.46740 * 60.00729 * 1 2 3 23 23 H 1.08996 * 109.47035 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47692 * 300.00766 * 1 2 3 25 25 H 1.08999 * 109.47551 * 59.99393 * 3 2 1 26 26 H 1.08999 * 109.47039 * 299.99216 * 3 2 1 27 27 H 1.09004 * 109.46858 * 307.02835 * 4 3 2 28 28 H 1.09000 * 109.47224 * 187.03214 * 4 3 2 29 29 H 1.08997 * 109.47069 * 59.65608 * 6 5 4 30 30 H 1.08999 * 109.47021 * 179.65614 * 6 5 4 31 31 H 0.97002 * 119.99192 * 180.02562 * 10 9 7 32 32 H 1.08994 * 109.47319 * 306.05307 * 15 5 4 33 33 H 1.08996 * 109.47115 * 186.04649 * 15 5 4 34 34 H 1.08999 * 109.47214 * 59.99921 * 16 15 5 35 35 H 1.08996 * 109.47140 * 299.99801 * 16 15 5 36 36 H 1.07994 * 122.54541 * 359.95283 * 18 17 16 37 37 H 1.07991 * 122.54024 * 180.02562 * 19 18 17 38 38 H 1.07999 * 125.20509 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9815 0.6070 -1.2742 6 6 3.6031 -0.8091 -1.3715 7 6 4.2475 -1.5796 -0.2480 8 1 4.9403 -1.0860 0.4174 9 6 3.9526 -2.9146 -0.0696 10 7 3.1093 -3.5157 -0.8803 11 14 4.7519 -3.8698 1.3225 12 1 5.6550 -2.9708 2.0851 13 1 3.7002 -4.3982 2.2279 14 1 5.5356 -4.9996 0.7616 15 6 3.4542 1.3721 -2.4120 16 6 4.0684 2.7734 -2.4127 17 6 3.5280 3.5582 -3.5803 18 6 2.4322 4.3183 -3.5545 19 6 2.1299 4.9465 -4.7505 20 6 2.9805 4.6968 -5.7472 21 16 4.2498 3.6179 -5.1829 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8898 25 1 1.6885 1.8465 0.8899 26 1 1.6887 1.8463 -0.8900 27 1 3.8484 0.5391 0.8214 28 1 3.9781 2.1727 0.1265 29 1 2.5194 -0.9013 -1.3005 30 1 3.9400 -1.2103 -2.3273 31 1 2.9016 -4.4549 -0.7545 32 1 2.3705 1.4505 -2.3262 33 1 3.7092 0.8632 -3.3415 34 1 5.1522 2.6951 -2.4984 35 1 3.8133 3.2824 -1.4832 36 1 1.8265 4.4347 -2.6680 37 1 1.2709 5.5905 -4.8675 38 1 2.9038 5.0989 -6.7466 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108144009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:32 Heat of formation + Delta-G solvation = -1.866316 kcal Electronic energy + Delta-G solvation = -18775.320081 eV Core-core repulsion = 15938.143770 eV Total energy + Delta-G solvation = -2837.176311 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.50963 -37.66010 -35.87095 -32.88836 -31.81478 -29.00961 -27.96394 -26.06826 -25.45802 -23.75264 -22.82400 -21.69952 -19.32918 -19.11667 -17.01501 -16.31018 -15.99220 -15.90820 -15.43447 -14.57073 -14.35546 -14.18597 -13.79616 -13.35815 -13.03119 -12.66874 -12.46095 -12.03259 -11.90438 -11.80333 -11.71335 -11.32036 -11.04775 -10.90617 -10.79909 -10.63590 -10.51160 -10.38006 -10.03725 -9.73996 -9.02785 -8.93868 -8.52431 -8.43563 -8.25113 -7.02545 -5.84799 -3.82402 1.05063 1.68958 2.06724 2.77784 3.39866 3.46868 3.51124 4.42250 4.55866 4.81316 5.04537 5.20218 5.40989 5.51876 5.53387 5.56093 5.60812 5.62391 5.73981 5.78960 5.85888 5.95907 5.99263 6.13424 6.16241 6.23786 6.34536 6.36339 6.50364 6.60803 6.83295 7.43160 7.79811 7.90487 7.93996 8.20668 8.37397 8.72619 9.23490 9.78591 11.26770 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024919 B = 0.004715 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.386717 B = 5936.652853 C = 6496.624806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C 0.022 3.978 4 C 0.060 3.940 5 N -0.533 5.533 6 C 0.181 3.819 7 C -0.492 4.492 8 H 0.058 0.942 9 C 0.058 3.942 10 N -0.897 5.897 11 Si 0.890 3.110 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.287 1.287 15 C 0.057 3.943 16 C -0.050 4.050 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.131 4.131 20 C -0.228 4.228 21 S 0.097 5.903 22 H 0.028 0.972 23 H 0.082 0.918 24 H 0.028 0.972 25 H 0.035 0.965 26 H 0.042 0.958 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.016 0.984 31 H 0.256 0.744 32 H 0.032 0.968 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.252 16.149 -5.055 17.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.261 6.261 3 C -0.057 4.057 4 C -0.069 4.069 5 N -0.256 5.256 6 C 0.057 3.943 7 C -0.531 4.531 8 H 0.076 0.924 9 C -0.142 4.142 10 N -0.538 5.538 11 Si 0.719 3.281 12 H -0.199 1.199 13 H -0.214 1.214 14 H -0.213 1.213 15 C -0.072 4.072 16 C -0.089 4.089 17 C -0.269 4.269 18 C -0.184 4.184 19 C -0.161 4.161 20 C -0.364 4.364 21 S 0.360 5.640 22 H 0.047 0.953 23 H 0.100 0.900 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.419 15.171 -5.794 16.302 hybrid contribution -2.140 0.268 1.289 2.512 sum -3.558 15.439 -4.505 16.472 Atomic orbital electron populations 1.22673 0.83726 1.02255 0.98254 1.88477 1.17326 1.25686 1.94582 1.23361 0.97617 0.86085 0.98628 1.22236 0.89395 0.99533 0.95747 1.62328 1.58202 1.05670 0.99384 1.20031 0.97301 0.80178 0.96774 1.21087 1.24658 0.94247 1.13101 0.92399 1.24877 0.95383 0.97712 0.96262 1.69981 1.35073 1.10864 1.37853 0.86573 0.79079 0.79985 0.82489 1.19886 1.21363 1.21335 1.22074 0.96748 0.92184 0.96244 1.20271 1.00966 0.94732 0.92976 1.24681 0.99984 1.03586 0.98678 1.20100 0.98323 1.00514 0.99414 1.20131 1.00999 1.02391 0.92627 1.25557 1.00804 1.06423 1.03567 1.84379 1.28240 1.46277 1.05091 0.95327 0.89981 0.95353 0.94712 0.94004 0.88618 0.91512 0.94429 0.96593 0.93434 0.94969 0.91484 0.90030 0.90273 0.84635 0.84724 0.82302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.34 -7.29 7.58 -35.23 -0.27 -7.56 16 3 C 0.02 0.38 5.69 37.16 0.21 0.59 16 4 C 0.06 1.13 5.36 -3.83 -0.02 1.11 16 5 N -0.53 -11.31 4.75 -236.07 -1.12 -12.43 16 6 C 0.18 4.76 4.29 -4.98 -0.02 4.74 16 7 C -0.49 -13.93 8.21 -34.44 -0.28 -14.21 16 8 H 0.06 1.63 6.99 -52.49 -0.37 1.26 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 11 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 C 0.06 1.02 4.58 -3.82 -0.02 1.00 16 16 C -0.05 -0.72 5.63 -27.88 -0.16 -0.88 16 17 C -0.15 -2.03 5.76 -36.00 -0.21 -2.24 16 18 C -0.15 -1.89 10.05 -41.21 -0.41 -2.30 16 19 C -0.13 -1.44 10.18 -41.20 -0.42 -1.86 16 20 C -0.23 -2.47 11.23 29.04 0.33 -2.14 16 21 S 0.10 1.20 23.33 -107.50 -2.51 -1.31 16 22 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.04 0.69 5.80 -51.93 -0.30 0.39 16 27 H 0.10 2.06 6.33 -51.93 -0.33 1.73 16 28 H 0.07 1.05 6.77 -51.93 -0.35 0.70 16 29 H 0.04 1.06 5.29 -51.93 -0.27 0.79 16 30 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.03 0.59 5.71 -51.93 -0.30 0.29 16 33 H 0.07 1.27 8.01 -51.93 -0.42 0.86 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.06 6.69 -51.93 -0.35 0.71 16 36 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 37 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 320.09 15.07 4.82 4.82 Total: -1.00 -31.11 320.09 -8.96 -40.07 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.62 Total: -1.30 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 0.01 Total: -13.02 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: -0.38 Total: -38.81 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.27 Total: -7.56 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.51 Total: -1.31 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.11 -8.96 -40.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108144009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.204 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds