Wall clock time and date at job start Mon Mar 30 2020 00:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99890 * 2 1 4 4 C 1.53000 * 109.46994 * 179.97438 * 3 2 1 5 5 N 1.46894 * 109.47469 * 67.03016 * 4 3 2 6 6 C 1.46901 * 111.00051 * 289.93916 * 5 4 3 7 7 C 1.50700 * 109.47117 * 299.65731 * 6 5 4 8 8 H 1.07998 * 119.99604 * 354.88227 * 7 6 5 9 9 C 1.37873 * 120.00479 * 174.88296 * 7 6 5 10 10 N 1.31524 * 119.99407 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00504 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47041 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46927 * 119.99974 * 11 9 7 14 14 H 1.48497 * 109.47475 * 240.00058 * 11 9 7 15 15 C 1.46904 * 110.99978 * 53.88843 * 5 4 3 16 16 C 1.53003 * 109.46793 * 66.04833 * 15 5 4 17 17 C 1.50706 * 109.46936 * 179.97438 * 16 15 5 18 18 C 1.33390 * 125.19597 * 90.00385 * 17 16 15 19 19 C 1.38430 * 114.91756 * 179.97438 * 18 17 16 20 20 C 1.33391 * 114.92005 * 359.97438 * 19 18 17 21 21 S 1.75875 * 125.20462 * 269.69413 * 17 16 15 22 22 H 1.09003 * 109.46740 * 60.00729 * 1 2 3 23 23 H 1.08996 * 109.47035 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47692 * 300.00766 * 1 2 3 25 25 H 1.08999 * 109.47551 * 59.99393 * 3 2 1 26 26 H 1.08999 * 109.47039 * 299.99216 * 3 2 1 27 27 H 1.09004 * 109.46858 * 307.02835 * 4 3 2 28 28 H 1.09000 * 109.47224 * 187.03214 * 4 3 2 29 29 H 1.08997 * 109.47069 * 59.65608 * 6 5 4 30 30 H 1.08999 * 109.47021 * 179.65614 * 6 5 4 31 31 H 0.97002 * 119.99192 * 180.02562 * 10 9 7 32 32 H 1.08994 * 109.47319 * 306.05307 * 15 5 4 33 33 H 1.08996 * 109.47115 * 186.04649 * 15 5 4 34 34 H 1.08999 * 109.47214 * 59.99921 * 16 15 5 35 35 H 1.08996 * 109.47140 * 299.99801 * 16 15 5 36 36 H 1.07994 * 122.54541 * 359.95283 * 18 17 16 37 37 H 1.07991 * 122.54024 * 180.02562 * 19 18 17 38 38 H 1.07999 * 125.20509 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9815 0.6070 -1.2742 6 6 3.6031 -0.8091 -1.3715 7 6 4.2475 -1.5796 -0.2480 8 1 4.9403 -1.0860 0.4174 9 6 3.9526 -2.9146 -0.0696 10 7 3.1093 -3.5157 -0.8803 11 14 4.7519 -3.8698 1.3225 12 1 5.6550 -2.9708 2.0851 13 1 3.7002 -4.3982 2.2279 14 1 5.5356 -4.9996 0.7616 15 6 3.4542 1.3721 -2.4120 16 6 4.0684 2.7734 -2.4127 17 6 3.5280 3.5582 -3.5803 18 6 2.4322 4.3183 -3.5545 19 6 2.1299 4.9465 -4.7505 20 6 2.9805 4.6968 -5.7472 21 16 4.2498 3.6179 -5.1829 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8898 25 1 1.6885 1.8465 0.8899 26 1 1.6887 1.8463 -0.8900 27 1 3.8484 0.5391 0.8214 28 1 3.9781 2.1727 0.1265 29 1 2.5194 -0.9013 -1.3005 30 1 3.9400 -1.2103 -2.3273 31 1 2.9016 -4.4549 -0.7545 32 1 2.3705 1.4505 -2.3262 33 1 3.7092 0.8632 -3.3415 34 1 5.1522 2.6951 -2.4984 35 1 3.8133 3.2824 -1.4832 36 1 1.8265 4.4347 -2.6680 37 1 1.2709 5.5905 -4.8675 38 1 2.9038 5.0989 -6.7466 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108144009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:32 Heat of formation + Delta-G solvation = -21.740742 kcal Electronic energy + Delta-G solvation = -18776.181901 eV Core-core repulsion = 15938.143770 eV Total energy + Delta-G solvation = -2838.038131 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.95402 -38.70508 -37.38442 -34.80934 -33.27755 -30.60372 -29.39788 -27.55100 -26.99084 -25.02577 -24.37637 -23.18009 -20.86810 -20.07014 -18.37547 -18.04414 -17.52024 -17.37319 -16.58055 -16.32649 -15.91342 -15.58785 -15.28849 -14.74228 -14.19892 -14.05515 -13.63902 -13.54438 -13.32876 -13.16668 -12.93636 -12.91263 -12.71746 -12.55660 -12.37241 -12.29223 -11.96597 -11.78150 -11.62179 -11.44552 -11.08604 -10.57040 -10.27709 -9.51012 -9.37610 -8.75560 -8.05758 -6.10740 0.12972 0.76625 1.17032 1.42905 1.43111 1.55718 1.89037 2.48043 3.04488 3.28630 3.41781 3.99371 4.11011 4.21680 4.28855 4.29990 4.43696 4.45067 4.52850 4.58612 4.61538 4.71472 4.74603 4.82952 4.87282 4.99476 5.08517 5.22966 5.30805 5.43108 5.48724 5.65927 5.72351 5.79829 6.22024 6.43106 6.49472 6.78965 7.05454 7.55057 9.06026 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024919 B = 0.004715 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.386717 B = 5936.652853 C = 6496.624806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.391 6.391 3 C 0.024 3.976 4 C 0.059 3.941 5 N -0.542 5.542 6 C 0.198 3.802 7 C -0.501 4.501 8 H 0.055 0.945 9 C 0.005 3.995 10 N -0.933 5.933 11 Si 0.958 3.042 12 H -0.265 1.265 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.064 3.936 16 C -0.034 4.034 17 C -0.178 4.178 18 C -0.147 4.147 19 C -0.140 4.140 20 C -0.217 4.217 21 S 0.068 5.932 22 H 0.042 0.958 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.020 0.980 30 H -0.023 1.023 31 H 0.258 0.742 32 H 0.031 0.969 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.150 0.850 37 H 0.163 0.837 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 18.290 -4.435 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.310 6.310 3 C -0.054 4.054 4 C -0.069 4.069 5 N -0.265 5.265 6 C 0.072 3.928 7 C -0.540 4.540 8 H 0.074 0.926 9 C -0.193 4.193 10 N -0.575 5.575 11 Si 0.784 3.216 12 H -0.189 1.189 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.064 4.064 16 C -0.074 4.074 17 C -0.296 4.296 18 C -0.177 4.177 19 C -0.170 4.170 20 C -0.352 4.352 21 S 0.331 5.669 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.038 0.962 30 H -0.005 1.005 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.168 0.832 37 H 0.180 0.820 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.947 17.341 -5.170 18.200 hybrid contribution -2.027 -0.312 1.028 2.294 sum -3.974 17.030 -4.142 17.971 Atomic orbital electron populations 1.22767 0.81819 1.02196 1.00216 1.88385 1.19663 1.27986 1.94966 1.23396 0.96297 0.85182 1.00543 1.22286 0.90967 1.00414 0.93243 1.62185 1.58985 1.03670 1.01642 1.19624 0.95831 0.83233 0.94113 1.21368 1.24436 0.94777 1.13377 0.92633 1.25720 0.95954 0.98805 0.98774 1.70116 1.36520 1.11191 1.39661 0.85510 0.78235 0.78492 0.79376 1.18881 1.20883 1.20874 1.22024 0.96793 0.93666 0.93956 1.20033 1.00311 0.92493 0.94524 1.24558 1.01291 1.05151 0.98584 1.20410 0.97492 0.99331 1.00472 1.20443 1.01890 1.02650 0.91991 1.25919 0.99436 1.05068 1.04764 1.84488 1.29624 1.47430 1.05372 0.93908 0.91203 0.92657 0.91809 0.92706 0.91553 0.87724 0.96216 1.00525 0.93372 0.95089 0.93662 0.90633 0.88654 0.83235 0.81989 0.79709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.39 -16.59 7.58 -148.98 -1.13 -17.72 16 3 C 0.02 0.79 5.69 71.98 0.41 1.20 16 4 C 0.06 2.18 5.36 86.30 0.46 2.65 16 5 N -0.54 -23.33 4.75 -900.81 -4.28 -27.61 16 6 C 0.20 10.79 4.29 85.56 0.37 11.16 16 7 C -0.50 -29.06 8.21 25.60 0.21 -28.85 16 8 H 0.06 3.18 6.99 -2.91 -0.02 3.16 16 9 C 0.00 0.27 5.46 84.65 0.46 0.73 16 10 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 11 Si 0.96 45.95 29.54 68.60 2.03 47.98 16 12 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 15 C 0.06 2.33 4.58 86.30 0.40 2.72 16 16 C -0.03 -0.95 5.63 29.85 0.17 -0.78 16 17 C -0.18 -4.53 5.76 24.59 0.14 -4.39 16 18 C -0.15 -3.22 10.05 21.22 0.21 -3.01 16 19 C -0.14 -2.63 10.18 21.22 0.22 -2.42 16 20 C -0.22 -4.13 11.23 66.72 0.75 -3.38 16 21 S 0.07 1.62 23.33 -56.49 -1.32 0.31 16 22 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.05 1.70 5.80 -2.39 -0.01 1.68 16 27 H 0.07 2.85 6.33 -2.39 -0.02 2.84 16 28 H 0.10 3.03 6.77 -2.39 -0.02 3.02 16 29 H 0.02 1.18 5.29 -2.39 -0.01 1.17 16 30 H -0.02 -1.42 8.05 -2.39 -0.02 -1.44 16 31 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.03 1.13 5.71 -2.39 -0.01 1.11 16 33 H 0.04 1.80 8.01 -2.39 -0.02 1.78 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.10 2.30 6.69 -2.39 -0.02 2.29 16 36 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 37 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 38 H 0.19 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -68.96 320.09 1.67 -67.30 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.04 Total: 9.63 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 5.04 Total: -22.25 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -3.99 Total: -85.24 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -1.13 Total: -17.72 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -1.32 Total: 0.31 kcal Total: -68.96 1.67 -67.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108144009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.555 kcal (2) G-P(sol) polarization free energy of solvation -68.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds