Wall clock time and date at job start Mon Mar 30 2020 01:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47263 * 313.22877 * 3 2 1 5 5 N 1.46906 * 109.47193 * 181.17868 * 4 3 2 6 6 C 1.46904 * 110.99327 * 299.47725 * 5 4 3 7 7 C 1.50706 * 109.46859 * 294.06512 * 6 5 4 8 8 H 1.07992 * 120.00108 * 355.11277 * 7 6 5 9 9 C 1.37877 * 119.99431 * 175.11101 * 7 6 5 10 10 N 1.31515 * 120.00450 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99662 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47041 * 89.99824 * 11 9 7 13 13 H 1.48501 * 109.46885 * 209.99612 * 11 9 7 14 14 H 1.48496 * 109.47200 * 329.99921 * 11 9 7 15 15 C 1.46892 * 111.00333 * 63.42887 * 5 4 3 16 16 C 1.50698 * 109.47236 * 66.04661 * 15 5 4 17 17 C 1.38370 * 119.84399 * 90.00098 * 16 15 5 18 18 C 1.37948 * 120.14844 * 180.02562 * 17 16 15 19 19 C 1.39634 * 119.84751 * 359.97438 * 18 17 16 20 20 C 1.43193 * 120.14776 * 180.02562 * 19 18 17 21 21 N 8.43833 * 105.26718 * 259.15249 * 2 1 3 22 22 C 1.39627 * 119.69668 * 0.27826 * 19 18 17 23 23 C 1.37943 * 119.85174 * 359.46822 * 22 19 18 24 24 H 1.09004 * 109.46984 * 193.22734 * 3 2 1 25 25 H 1.09004 * 109.47481 * 73.22942 * 3 2 1 26 26 H 1.08992 * 109.47286 * 61.17393 * 4 3 2 27 27 H 1.09004 * 109.47071 * 301.17269 * 4 3 2 28 28 H 1.08998 * 109.47616 * 54.06740 * 6 5 4 29 29 H 1.08998 * 109.46967 * 174.07025 * 6 5 4 30 30 H 0.97004 * 120.00137 * 180.02562 * 10 9 7 31 31 H 1.09011 * 109.47271 * 306.04827 * 15 5 4 32 32 H 1.09005 * 109.47296 * 186.05049 * 15 5 4 33 33 H 1.08003 * 119.92344 * 0.02562 * 17 16 15 34 34 H 1.08002 * 120.07498 * 179.97438 * 18 17 16 35 35 H 1.08009 * 120.07532 * 179.69791 * 22 19 18 36 36 H 1.07995 * 119.92969 * 180.23848 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.9871 1.0510 5 7 4.5872 -0.9657 1.0706 6 6 5.1367 -1.3566 -0.2345 7 6 4.8003 -2.7997 -0.5093 8 1 4.3043 -3.3917 0.2455 9 6 5.1257 -3.3640 -1.7245 10 7 5.7301 -2.6432 -2.6436 11 14 4.7081 -5.1526 -2.0654 12 1 3.3540 -5.2384 -2.6690 13 1 5.7061 -5.7234 -3.0054 14 1 4.7322 -5.9178 -0.7930 15 6 5.0892 0.3528 1.4795 16 6 4.7078 0.6127 2.9141 17 6 5.5601 0.2277 3.9338 18 6 5.2170 0.4621 5.2492 19 6 4.0067 1.0899 5.5505 20 6 3.6444 1.3368 6.9136 21 7 3.3579 1.5320 7.9951 22 6 3.1490 1.4709 4.5167 23 6 3.5069 1.2352 3.2055 24 1 2.9709 1.0013 0.2352 25 1 2.9715 -0.2957 -0.9840 26 1 2.7729 -1.9909 0.8044 27 1 2.7379 -0.7026 2.0321 28 1 4.7050 -0.7282 -1.0135 29 1 6.2194 -1.2314 -0.2251 30 1 5.9587 -3.0401 -3.4986 31 1 4.6521 1.1217 0.8423 32 1 6.1747 0.3745 1.3825 33 1 6.4962 -0.2574 3.6993 34 1 5.8830 0.1607 6.0443 35 1 2.2091 1.9526 4.7429 36 1 2.8463 1.5329 2.4048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121921445.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:09 Heat of formation + Delta-G solvation = 83.174036 kcal Electronic energy + Delta-G solvation = -19158.595979 eV Core-core repulsion = 16221.956094 eV Total energy + Delta-G solvation = -2936.639885 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.81664 -37.82988 -36.50636 -35.91566 -32.92920 -32.01268 -31.18952 -30.26153 -27.57312 -25.64122 -23.91896 -22.80253 -22.12796 -19.89350 -19.00118 -17.54690 -16.44989 -15.78393 -15.54248 -15.32271 -14.64796 -14.57383 -14.30218 -14.07656 -13.79475 -13.61232 -13.54681 -13.03789 -12.91265 -12.47699 -12.25614 -12.12399 -12.08379 -11.75186 -11.45540 -11.38688 -11.13807 -11.01824 -10.79321 -10.64730 -10.31387 -9.99431 -9.38361 -9.07357 -8.81202 -8.54935 -7.50950 -6.15293 -4.17103 0.69663 1.28255 2.54606 2.85737 3.03057 3.05866 3.25931 3.33680 3.37067 3.76601 3.80290 4.25948 4.35253 4.72848 4.77892 4.80342 4.98748 5.21523 5.26541 5.29100 5.36802 5.48464 5.63743 5.66297 5.74260 5.93292 6.01578 6.15419 6.19475 6.21113 6.50505 6.59693 6.75915 7.04993 7.11862 7.35873 7.63834 7.77978 7.88627 7.96527 8.32902 8.91006 9.48751 10.94812 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.004574 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.442075 B = 6120.223873 C = 6861.351089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.223 3.777 3 C -0.076 4.076 4 C 0.067 3.933 5 N -0.520 5.520 6 C 0.186 3.814 7 C -0.511 4.511 8 H 0.065 0.935 9 C 0.059 3.941 10 N -0.896 5.896 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.074 3.926 16 C -0.030 4.030 17 C -0.100 4.100 18 C -0.069 4.069 19 C -0.045 4.045 20 C 0.262 3.738 21 N -0.432 5.432 22 C -0.070 4.070 23 C -0.120 4.120 24 H 0.099 0.901 25 H 0.124 0.876 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.006 0.994 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.595 8.295 8.701 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.063 4.063 5 N -0.242 5.242 6 C 0.061 3.939 7 C -0.550 4.550 8 H 0.083 0.917 9 C -0.143 4.143 10 N -0.536 5.536 11 Si 0.721 3.279 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.054 4.054 16 C -0.031 4.031 17 C -0.118 4.118 18 C -0.090 4.090 19 C -0.049 4.049 20 C -0.053 4.053 21 N -0.107 5.107 22 C -0.091 4.091 23 C -0.138 4.138 24 H 0.117 0.883 25 H 0.142 0.858 26 H 0.111 0.889 27 H 0.086 0.914 28 H 0.024 0.976 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.278 8.224 10.531 13.423 hybrid contribution 0.094 -0.500 -1.403 1.492 sum -1.184 7.724 9.128 12.016 Atomic orbital electron populations 1.81156 1.13189 1.09584 1.09767 1.29271 0.95266 0.92501 0.92450 1.20267 0.81562 1.03481 1.06420 1.22138 0.89054 0.99419 0.95682 1.62459 1.05211 1.22723 1.33822 1.19903 0.95432 0.96310 0.82215 1.21112 1.38764 0.95629 0.99469 0.91693 1.24940 0.95161 0.98037 0.96114 1.69929 1.41055 1.36410 1.06160 0.86560 0.78074 0.84950 0.78267 1.20740 1.21274 1.19703 1.21262 1.01385 0.92472 0.90235 1.20262 0.93178 0.93203 0.96464 1.21042 1.00627 0.99004 0.91161 1.21160 0.94389 0.96085 0.97366 1.15966 0.97420 1.06434 0.85034 1.25818 0.93381 0.93285 0.92846 1.81218 1.08304 1.09395 1.11816 1.21086 0.98381 0.97827 0.91800 1.21053 0.96776 0.99996 0.96017 0.88326 0.85788 0.88860 0.91437 0.97601 0.94996 0.92798 0.93705 0.89518 0.84534 0.85264 0.85424 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.80 18.54 42.15 0.78 -7.02 16 2 C 0.22 3.28 15.43 -20.76 -0.32 2.96 16 3 C -0.08 -0.99 4.94 -29.52 -0.15 -1.14 16 4 C 0.07 0.99 4.74 -3.82 -0.02 0.97 16 5 N -0.52 -8.36 4.69 -237.51 -1.11 -9.47 16 6 C 0.19 3.85 4.48 -4.97 -0.02 3.83 16 7 C -0.51 -12.36 8.41 -34.44 -0.29 -12.65 16 8 H 0.06 1.58 7.29 -52.49 -0.38 1.20 16 9 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 10 N -0.90 -23.94 13.29 55.43 0.74 -23.21 16 11 Si 0.89 20.07 29.54 -169.99 -5.02 15.04 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 C 0.07 0.92 4.92 -4.98 -0.02 0.89 16 16 C -0.03 -0.32 4.90 -104.53 -0.51 -0.83 16 17 C -0.10 -1.00 9.68 -39.64 -0.38 -1.38 16 18 C -0.07 -0.64 9.76 -39.17 -0.38 -1.03 16 19 C -0.04 -0.45 5.73 -106.93 -0.61 -1.06 16 20 C 0.26 3.02 15.33 -22.49 -0.34 2.67 16 21 N -0.43 -5.90 18.53 41.82 0.78 -5.13 16 22 C -0.07 -0.66 9.76 -39.17 -0.38 -1.04 16 23 C -0.12 -1.16 7.88 -39.64 -0.31 -1.47 16 24 H 0.10 1.02 5.71 -51.93 -0.30 0.72 16 25 H 0.12 1.88 6.35 -51.93 -0.33 1.55 16 26 H 0.09 1.59 6.94 -51.93 -0.36 1.23 16 27 H 0.07 0.88 5.92 -51.93 -0.31 0.57 16 28 H 0.01 0.13 6.04 -51.93 -0.31 -0.18 16 29 H 0.03 0.72 7.93 -51.93 -0.41 0.31 16 30 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.04 0.50 6.03 -51.92 -0.31 0.18 16 32 H 0.09 1.07 7.87 -51.93 -0.41 0.66 16 33 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.13 1.10 7.28 -52.49 -0.38 0.72 16 LS Contribution 317.18 15.07 4.78 4.78 Total: -1.00 -28.36 317.18 -6.82 -35.18 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -3.91 Total: -2.32 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -3.85 Total: -7.85 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 1.18 Total: -44.83 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.36 -6.82 -35.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121921445.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.355 kcal (2) G-P(sol) polarization free energy of solvation -28.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds