Wall clock time and date at job start Mon Mar 30 2020 01:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47263 * 313.22877 * 3 2 1 5 5 N 1.46906 * 109.47193 * 181.17868 * 4 3 2 6 6 C 1.46904 * 110.99327 * 299.47725 * 5 4 3 7 7 C 1.50706 * 109.46859 * 294.06512 * 6 5 4 8 8 H 1.07992 * 120.00108 * 355.11277 * 7 6 5 9 9 C 1.37877 * 119.99431 * 175.11101 * 7 6 5 10 10 N 1.31515 * 120.00450 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99662 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47041 * 89.99824 * 11 9 7 13 13 H 1.48501 * 109.46885 * 209.99612 * 11 9 7 14 14 H 1.48496 * 109.47200 * 329.99921 * 11 9 7 15 15 C 1.46892 * 111.00333 * 63.42887 * 5 4 3 16 16 C 1.50698 * 109.47236 * 66.04661 * 15 5 4 17 17 C 1.38370 * 119.84399 * 90.00098 * 16 15 5 18 18 C 1.37948 * 120.14844 * 180.02562 * 17 16 15 19 19 C 1.39634 * 119.84751 * 359.97438 * 18 17 16 20 20 C 1.43193 * 120.14776 * 180.02562 * 19 18 17 21 21 N 8.43833 * 105.26718 * 259.15249 * 2 1 3 22 22 C 1.39627 * 119.69668 * 0.27826 * 19 18 17 23 23 C 1.37943 * 119.85174 * 359.46822 * 22 19 18 24 24 H 1.09004 * 109.46984 * 193.22734 * 3 2 1 25 25 H 1.09004 * 109.47481 * 73.22942 * 3 2 1 26 26 H 1.08992 * 109.47286 * 61.17393 * 4 3 2 27 27 H 1.09004 * 109.47071 * 301.17269 * 4 3 2 28 28 H 1.08998 * 109.47616 * 54.06740 * 6 5 4 29 29 H 1.08998 * 109.46967 * 174.07025 * 6 5 4 30 30 H 0.97004 * 120.00137 * 180.02562 * 10 9 7 31 31 H 1.09011 * 109.47271 * 306.04827 * 15 5 4 32 32 H 1.09005 * 109.47296 * 186.05049 * 15 5 4 33 33 H 1.08003 * 119.92344 * 0.02562 * 17 16 15 34 34 H 1.08002 * 120.07498 * 179.97438 * 18 17 16 35 35 H 1.08009 * 120.07532 * 179.69791 * 22 19 18 36 36 H 1.07995 * 119.92969 * 180.23848 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.9871 1.0510 5 7 4.5872 -0.9657 1.0706 6 6 5.1367 -1.3566 -0.2345 7 6 4.8003 -2.7997 -0.5093 8 1 4.3043 -3.3917 0.2455 9 6 5.1257 -3.3640 -1.7245 10 7 5.7301 -2.6432 -2.6436 11 14 4.7081 -5.1526 -2.0654 12 1 3.3540 -5.2384 -2.6690 13 1 5.7061 -5.7234 -3.0054 14 1 4.7322 -5.9178 -0.7930 15 6 5.0892 0.3528 1.4795 16 6 4.7078 0.6127 2.9141 17 6 5.5601 0.2277 3.9338 18 6 5.2170 0.4621 5.2492 19 6 4.0067 1.0899 5.5505 20 6 3.6444 1.3368 6.9136 21 7 3.3579 1.5320 7.9951 22 6 3.1490 1.4709 4.5167 23 6 3.5069 1.2352 3.2055 24 1 2.9709 1.0013 0.2352 25 1 2.9715 -0.2957 -0.9840 26 1 2.7729 -1.9909 0.8044 27 1 2.7379 -0.7026 2.0321 28 1 4.7050 -0.7282 -1.0135 29 1 6.2194 -1.2314 -0.2251 30 1 5.9587 -3.0401 -3.4986 31 1 4.6521 1.1217 0.8423 32 1 6.1747 0.3745 1.3825 33 1 6.4962 -0.2574 3.6993 34 1 5.8830 0.1607 6.0443 35 1 2.2091 1.9526 4.7429 36 1 2.8463 1.5329 2.4048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121921445.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:08 Heat of formation + Delta-G solvation = 67.852159 kcal Electronic energy + Delta-G solvation = -19159.260386 eV Core-core repulsion = 16221.956094 eV Total energy + Delta-G solvation = -2937.304292 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.68186 -38.97848 -37.53491 -37.12869 -34.68679 -33.02948 -31.99545 -31.46760 -29.02642 -26.84751 -25.34343 -23.55677 -23.29743 -21.14556 -19.80233 -18.80002 -18.15612 -16.93399 -16.56584 -16.43356 -16.08961 -15.55022 -15.30060 -15.21988 -14.94781 -14.81436 -14.31108 -14.26520 -13.90732 -13.83683 -13.48410 -13.34475 -13.14854 -13.02858 -12.85676 -12.64931 -12.48900 -12.41332 -12.15970 -11.81683 -11.75478 -11.40226 -11.13731 -10.48052 -9.80775 -9.65532 -8.81759 -8.08564 -6.13931 -0.11588 0.55381 1.46452 1.50314 1.57998 1.64728 1.83290 1.86384 1.98508 2.48970 2.92354 2.96035 3.11327 3.26681 3.65979 3.98791 4.01696 4.09684 4.26297 4.31212 4.49690 4.53650 4.64934 4.82149 4.84136 4.96231 5.08397 5.20521 5.28588 5.36302 5.46218 5.48634 5.53797 5.77888 5.80734 5.99845 6.21583 6.41605 6.47773 6.65575 6.76369 7.03416 7.55073 9.00493 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.004574 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.442075 B = 6120.223873 C = 6861.351089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.245 3.755 3 C -0.064 4.064 4 C 0.071 3.929 5 N -0.527 5.527 6 C 0.199 3.801 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.013 3.987 10 N -0.927 5.927 11 Si 0.944 3.056 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.269 1.269 15 C 0.075 3.925 16 C -0.037 4.037 17 C -0.105 4.105 18 C -0.064 4.064 19 C -0.050 4.050 20 C 0.283 3.717 21 N -0.473 5.473 22 C -0.066 4.066 23 C -0.119 4.119 24 H 0.135 0.865 25 H 0.106 0.894 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.000 1.000 29 H 0.011 0.989 30 H 0.261 0.739 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.347 8.943 9.465 13.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.072 4.072 3 C -0.106 4.106 4 C -0.059 4.059 5 N -0.249 5.249 6 C 0.073 3.927 7 C -0.551 4.551 8 H 0.077 0.923 9 C -0.186 4.186 10 N -0.568 5.568 11 Si 0.771 3.229 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.194 1.194 15 C -0.052 4.052 16 C -0.038 4.038 17 C -0.124 4.124 18 C -0.084 4.084 19 C -0.054 4.054 20 C -0.031 4.031 21 N -0.150 5.150 22 C -0.086 4.086 23 C -0.138 4.138 24 H 0.153 0.847 25 H 0.124 0.876 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.017 0.983 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.532 8.874 11.315 14.461 hybrid contribution 0.201 -0.678 -1.587 1.737 sum -1.331 8.196 9.728 12.790 Atomic orbital electron populations 1.81185 1.14339 1.11010 1.10944 1.29398 0.95244 0.91250 0.91308 1.20225 0.80412 1.04983 1.04931 1.22054 0.88203 0.98408 0.97219 1.62263 1.05971 1.25679 1.31001 1.19544 0.94207 0.94525 0.84410 1.21472 1.37301 0.97412 0.98901 0.92274 1.25574 0.95571 1.01024 0.96410 1.70016 1.42668 1.37661 1.06494 0.85762 0.77577 0.81567 0.77977 1.20738 1.21458 1.19351 1.21286 1.01427 0.90810 0.91666 1.20145 0.94000 0.94233 0.95410 1.21147 1.00872 0.99039 0.91311 1.21307 0.94286 0.95268 0.97570 1.16055 0.97978 1.07045 0.84335 1.25986 0.92227 0.92087 0.92809 1.81244 1.09706 1.10955 1.13048 1.21267 0.98788 0.97182 0.91406 1.21180 0.96451 0.99584 0.96568 0.84703 0.87602 0.91685 0.89158 0.98259 0.97082 0.93034 0.91874 0.89689 0.84076 0.83659 0.83796 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.20 18.54 20.01 0.37 -15.82 16 2 C 0.24 6.77 15.43 89.44 1.38 8.15 16 3 C -0.06 -1.54 4.94 28.79 0.14 -1.40 16 4 C 0.07 1.96 4.74 86.30 0.41 2.37 16 5 N -0.53 -16.18 4.69 -905.35 -4.25 -20.43 16 6 C 0.20 8.19 4.48 85.56 0.38 8.57 16 7 C -0.51 -24.76 8.41 25.60 0.22 -24.54 16 8 H 0.06 2.88 7.29 -2.91 -0.02 2.85 16 9 C 0.01 0.65 5.46 84.65 0.46 1.11 16 10 N -0.93 -49.94 13.29 21.45 0.28 -49.66 16 11 Si 0.94 41.21 29.54 68.60 2.03 43.23 16 12 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 13 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 14 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 15 C 0.08 1.68 4.92 85.56 0.42 2.10 16 16 C -0.04 -0.68 4.90 -19.80 -0.10 -0.78 16 17 C -0.11 -1.84 9.68 22.23 0.22 -1.63 16 18 C -0.06 -1.02 9.76 22.54 0.22 -0.80 16 19 C -0.05 -0.87 5.73 -21.36 -0.12 -0.99 16 20 C 0.28 6.01 15.33 88.33 1.35 7.36 16 21 N -0.47 -12.42 18.53 19.00 0.35 -12.07 16 22 C -0.07 -1.02 9.76 22.54 0.22 -0.80 16 23 C -0.12 -1.89 7.88 22.23 0.18 -1.71 16 24 H 0.14 2.29 5.71 -2.38 -0.01 2.28 16 25 H 0.11 3.09 6.35 -2.38 -0.02 3.08 16 26 H 0.06 2.17 6.94 -2.39 -0.02 2.16 16 27 H 0.09 2.09 5.92 -2.39 -0.01 2.08 16 28 H 0.00 -0.01 6.04 -2.39 -0.01 -0.03 16 29 H 0.01 0.50 7.93 -2.39 -0.02 0.48 16 30 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.06 1.19 6.03 -2.38 -0.01 1.18 16 32 H 0.08 1.95 7.87 -2.38 -0.02 1.93 16 33 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 35 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.14 1.84 7.28 -2.91 -0.02 1.82 16 Total: -1.00 -60.71 317.18 5.27 -55.44 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.11 Total: 2.30 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 5.38 Total: -2.99 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -3.24 Total: -97.98 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -60.71 5.27 -55.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121921445.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.288 kcal (2) G-P(sol) polarization free energy of solvation -60.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds