Wall clock time and date at job start Mon Mar 30 2020 01:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46831 * 332.53975 * 3 2 1 5 5 N 1.46904 * 109.46395 * 182.28366 * 4 3 2 6 6 C 1.46894 * 111.00456 * 299.26089 * 5 4 3 7 7 C 1.50708 * 109.46973 * 288.75944 * 6 5 4 8 8 H 1.07997 * 120.00268 * 1.46483 * 7 6 5 9 9 C 1.37875 * 119.99743 * 181.46239 * 7 6 5 10 10 N 1.31519 * 119.99869 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00339 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46707 * 90.00136 * 11 9 7 13 13 H 1.48501 * 109.47160 * 210.00121 * 11 9 7 14 14 H 1.48501 * 109.47196 * 330.00415 * 11 9 7 15 15 C 1.46905 * 111.00031 * 63.21713 * 5 4 3 16 16 C 1.50697 * 109.47013 * 66.04376 * 15 5 4 17 17 C 1.37972 * 120.07266 * 259.99648 * 16 15 5 18 18 C 1.38346 * 120.14546 * 180.02562 * 17 16 15 19 19 C 1.38380 * 120.30600 * 359.97438 * 18 17 16 20 20 C 1.37918 * 120.15472 * 359.97438 * 19 18 17 21 21 C 1.39609 * 120.08021 * 79.95587 * 16 15 5 22 22 C 1.43201 * 120.14927 * 0.04465 * 21 16 15 23 23 N 7.34171 * 149.36906 * 311.16408 * 2 1 3 24 24 H 1.08997 * 109.46915 * 212.53638 * 3 2 1 25 25 H 1.09002 * 109.46762 * 92.54078 * 3 2 1 26 26 H 1.08997 * 109.47021 * 62.29012 * 4 3 2 27 27 H 1.08997 * 109.47343 * 302.28333 * 4 3 2 28 28 H 1.08997 * 109.47176 * 48.75607 * 6 5 4 29 29 H 1.09000 * 109.47597 * 168.76366 * 6 5 4 30 30 H 0.97004 * 119.99851 * 180.02562 * 10 9 7 31 31 H 1.08993 * 109.46872 * 306.04216 * 15 5 4 32 32 H 1.09003 * 109.47053 * 186.04086 * 15 5 4 33 33 H 1.07993 * 119.92747 * 359.97438 * 17 16 15 34 34 H 1.08006 * 119.84141 * 180.02562 * 18 17 16 35 35 H 1.08009 * 119.91930 * 180.02562 * 19 18 17 36 36 H 1.08004 * 120.07852 * 179.72164 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2791 0.6652 5 7 4.5865 -1.2532 0.7143 6 6 5.1574 -1.1823 -0.6373 7 6 4.9574 -2.5020 -1.3370 8 1 4.4354 -3.3046 -0.8372 9 6 5.4407 -2.6847 -2.6153 10 7 5.2656 -3.8362 -3.2262 11 14 6.3428 -1.2963 -3.4802 12 1 7.7951 -1.3900 -3.1847 13 1 6.1278 -1.4035 -4.9457 14 1 5.8226 0.0083 -2.9977 15 6 5.0659 -0.1422 1.5472 16 6 4.6634 -0.3785 2.9801 17 6 3.5623 0.2668 3.5043 18 6 3.1917 0.0514 4.8197 19 6 3.9210 -0.8120 5.6182 20 6 5.0232 -1.4645 5.1067 21 6 5.4031 -1.2516 3.7799 22 6 6.5471 -1.9247 3.2424 23 7 7.4533 -2.4622 2.8161 24 1 2.9709 0.8672 0.5527 25 1 2.9713 0.0464 -1.0267 26 1 2.7895 -2.1441 0.0893 27 1 2.7222 -1.3450 1.6784 28 1 4.6597 -0.3932 -1.2009 29 1 6.2233 -0.9644 -0.5707 30 1 5.6060 -3.9649 -4.1254 31 1 4.6267 0.7913 1.1956 32 1 6.1522 -0.0804 1.4805 33 1 2.9890 0.9422 2.8868 34 1 2.3286 0.5588 5.2249 35 1 3.6258 -0.9760 6.6441 36 1 5.5941 -2.1346 5.7323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121983789.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:11 Heat of formation + Delta-G solvation = 90.985759 kcal Electronic energy + Delta-G solvation = -19647.329272 eV Core-core repulsion = 16711.028129 eV Total energy + Delta-G solvation = -2936.301143 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.89888 -37.75467 -36.09779 -36.01824 -32.81019 -32.00878 -31.30883 -30.43829 -27.85260 -25.65797 -23.92763 -23.23360 -21.60571 -19.94833 -18.54610 -17.65899 -16.81318 -15.96084 -15.77818 -15.39696 -14.83977 -14.48554 -14.22108 -13.99817 -13.62986 -13.55525 -13.25090 -12.88591 -12.56619 -12.49890 -12.30286 -12.22870 -12.16468 -11.92939 -11.58764 -11.44098 -11.24900 -11.18069 -10.73032 -10.57325 -10.25791 -10.00524 -9.40812 -9.02684 -8.84602 -8.61761 -7.62671 -6.09842 -4.08217 0.80408 1.21139 2.96790 2.99374 3.03115 3.12377 3.24035 3.29544 3.32847 3.90470 4.11719 4.18194 4.36062 4.60714 4.68731 4.80778 4.89961 5.13146 5.20709 5.25311 5.32076 5.39668 5.51468 5.60783 5.65801 5.76719 5.94243 6.04258 6.16841 6.29573 6.36697 6.48512 6.68618 6.71987 6.75533 7.44126 7.64459 7.74671 7.82413 7.84639 8.55219 8.99706 9.50401 11.03188 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.006744 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.931775 B = 4151.063139 C = 5473.800025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.222 3.778 3 C -0.075 4.075 4 C 0.068 3.932 5 N -0.510 5.510 6 C 0.157 3.843 7 C -0.510 4.510 8 H 0.082 0.918 9 C 0.071 3.929 10 N -0.896 5.896 11 Si 0.870 3.130 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.267 1.267 15 C 0.070 3.930 16 C -0.022 4.022 17 C -0.118 4.118 18 C -0.094 4.094 19 C -0.126 4.126 20 C -0.075 4.075 21 C -0.003 4.003 22 C 0.252 3.748 23 N -0.404 5.404 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.000 1.000 29 H 0.026 0.974 30 H 0.264 0.736 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.514 11.136 16.073 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.096 4.096 3 C -0.117 4.117 4 C -0.062 4.062 5 N -0.231 5.231 6 C 0.031 3.969 7 C -0.548 4.548 8 H 0.100 0.900 9 C -0.131 4.131 10 N -0.535 5.535 11 Si 0.698 3.302 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.057 4.057 16 C -0.025 4.025 17 C -0.137 4.137 18 C -0.113 4.113 19 C -0.145 4.145 20 C -0.096 4.096 21 C -0.006 4.006 22 C -0.063 4.063 23 N -0.079 5.079 24 H 0.118 0.882 25 H 0.137 0.863 26 H 0.116 0.884 27 H 0.089 0.911 28 H 0.018 0.982 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.569 9.747 15.421 18.423 hybrid contribution 0.358 1.559 -0.909 1.839 sum -2.211 11.305 14.512 18.528 Atomic orbital electron populations 1.81166 1.13080 1.09336 1.09606 1.29153 0.95144 0.92675 0.92589 1.20238 0.81884 1.03251 1.06321 1.22149 0.88276 0.95594 1.00180 1.62281 1.05657 1.40126 1.15081 1.20336 0.94561 0.98163 0.83809 1.20940 1.37281 0.97768 0.98794 0.90016 1.24877 0.95700 0.95331 0.97199 1.69884 1.46345 1.23422 1.13812 0.86948 0.80902 0.83163 0.79235 1.20153 1.21184 1.19161 1.21305 1.01196 0.94204 0.89040 1.19966 0.93614 0.93658 0.95281 1.21021 0.96391 1.00551 0.95715 1.21312 0.99036 0.97194 0.93775 1.21020 0.95543 0.97639 1.00259 1.21158 0.96675 0.98472 0.93274 1.15863 0.92491 0.98538 0.93748 1.25472 0.93121 0.94033 0.93703 1.81266 1.11794 1.07936 1.06879 0.88205 0.86290 0.88369 0.91064 0.98250 0.95643 0.92584 0.93217 0.89904 0.85373 0.85611 0.85359 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.55 18.54 42.15 0.78 -6.77 16 2 C 0.22 3.19 15.43 -20.76 -0.32 2.87 16 3 C -0.08 -0.96 5.06 -29.52 -0.15 -1.11 16 4 C 0.07 1.04 4.91 -3.82 -0.02 1.02 16 5 N -0.51 -8.84 4.65 -237.51 -1.11 -9.94 16 6 C 0.16 3.31 3.64 -4.98 -0.02 3.29 16 7 C -0.51 -13.45 9.15 -34.44 -0.32 -13.77 16 8 H 0.08 2.39 7.65 -52.49 -0.40 1.99 16 9 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 10 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 11 Si 0.87 20.46 27.44 -169.99 -4.66 15.79 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -5.78 6.58 56.52 0.37 -5.41 16 15 C 0.07 0.95 4.33 -4.97 -0.02 0.93 16 16 C -0.02 -0.26 4.61 -104.21 -0.48 -0.74 16 17 C -0.12 -1.09 8.63 -39.64 -0.34 -1.43 16 18 C -0.09 -0.74 10.04 -39.49 -0.40 -1.14 16 19 C -0.13 -0.98 10.03 -39.65 -0.40 -1.38 16 20 C -0.08 -0.71 9.76 -39.17 -0.38 -1.10 16 21 C 0.00 -0.03 5.73 -106.93 -0.61 -0.65 16 22 C 0.25 3.96 14.00 -22.45 -0.31 3.64 16 23 N -0.40 -7.52 18.54 41.86 0.78 -6.74 16 24 H 0.10 0.98 6.00 -51.93 -0.31 0.66 16 25 H 0.12 1.68 6.31 -51.93 -0.33 1.35 16 26 H 0.10 1.78 7.18 -51.93 -0.37 1.41 16 27 H 0.07 0.96 6.46 -51.93 -0.34 0.62 16 28 H 0.00 0.00 5.01 -51.93 -0.26 -0.26 16 29 H 0.03 0.56 7.17 -51.93 -0.37 0.19 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.05 0.55 5.92 -51.93 -0.31 0.24 16 32 H 0.08 1.21 7.21 -51.93 -0.37 0.84 16 33 H 0.13 0.98 7.79 -52.49 -0.41 0.57 16 34 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 35 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 36 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 313.90 15.07 4.73 4.73 Total: -1.00 -32.18 313.90 -6.48 -38.66 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -3.91 Total: -2.06 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -3.87 Total: -7.68 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 1.23 Total: -49.44 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.66 Total: 15.79 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.18 -6.48 -38.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121983789.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.648 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds