Wall clock time and date at job start Mon Mar 30 2020 01:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46831 * 332.53975 * 3 2 1 5 5 N 1.46904 * 109.46395 * 182.28366 * 4 3 2 6 6 C 1.46894 * 111.00456 * 299.26089 * 5 4 3 7 7 C 1.50708 * 109.46973 * 288.75944 * 6 5 4 8 8 H 1.07997 * 120.00268 * 1.46483 * 7 6 5 9 9 C 1.37875 * 119.99743 * 181.46239 * 7 6 5 10 10 N 1.31519 * 119.99869 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00339 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46707 * 90.00136 * 11 9 7 13 13 H 1.48501 * 109.47160 * 210.00121 * 11 9 7 14 14 H 1.48501 * 109.47196 * 330.00415 * 11 9 7 15 15 C 1.46905 * 111.00031 * 63.21713 * 5 4 3 16 16 C 1.50697 * 109.47013 * 66.04376 * 15 5 4 17 17 C 1.37972 * 120.07266 * 259.99648 * 16 15 5 18 18 C 1.38346 * 120.14546 * 180.02562 * 17 16 15 19 19 C 1.38380 * 120.30600 * 359.97438 * 18 17 16 20 20 C 1.37918 * 120.15472 * 359.97438 * 19 18 17 21 21 C 1.39609 * 120.08021 * 79.95587 * 16 15 5 22 22 C 1.43201 * 120.14927 * 0.04465 * 21 16 15 23 23 N 7.34171 * 149.36906 * 311.16408 * 2 1 3 24 24 H 1.08997 * 109.46915 * 212.53638 * 3 2 1 25 25 H 1.09002 * 109.46762 * 92.54078 * 3 2 1 26 26 H 1.08997 * 109.47021 * 62.29012 * 4 3 2 27 27 H 1.08997 * 109.47343 * 302.28333 * 4 3 2 28 28 H 1.08997 * 109.47176 * 48.75607 * 6 5 4 29 29 H 1.09000 * 109.47597 * 168.76366 * 6 5 4 30 30 H 0.97004 * 119.99851 * 180.02562 * 10 9 7 31 31 H 1.08993 * 109.46872 * 306.04216 * 15 5 4 32 32 H 1.09003 * 109.47053 * 186.04086 * 15 5 4 33 33 H 1.07993 * 119.92747 * 359.97438 * 17 16 15 34 34 H 1.08006 * 119.84141 * 180.02562 * 18 17 16 35 35 H 1.08009 * 119.91930 * 180.02562 * 19 18 17 36 36 H 1.08004 * 120.07852 * 179.72164 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2791 0.6652 5 7 4.5865 -1.2532 0.7143 6 6 5.1574 -1.1823 -0.6373 7 6 4.9574 -2.5020 -1.3370 8 1 4.4354 -3.3046 -0.8372 9 6 5.4407 -2.6847 -2.6153 10 7 5.2656 -3.8362 -3.2262 11 14 6.3428 -1.2963 -3.4802 12 1 7.7951 -1.3900 -3.1847 13 1 6.1278 -1.4035 -4.9457 14 1 5.8226 0.0083 -2.9977 15 6 5.0659 -0.1422 1.5472 16 6 4.6634 -0.3785 2.9801 17 6 3.5623 0.2668 3.5043 18 6 3.1917 0.0514 4.8197 19 6 3.9210 -0.8120 5.6182 20 6 5.0232 -1.4645 5.1067 21 6 5.4031 -1.2516 3.7799 22 6 6.5471 -1.9247 3.2424 23 7 7.4533 -2.4622 2.8161 24 1 2.9709 0.8672 0.5527 25 1 2.9713 0.0464 -1.0267 26 1 2.7895 -2.1441 0.0893 27 1 2.7222 -1.3450 1.6784 28 1 4.6597 -0.3932 -1.2009 29 1 6.2233 -0.9644 -0.5707 30 1 5.6060 -3.9649 -4.1254 31 1 4.6267 0.7913 1.1956 32 1 6.1522 -0.0804 1.4805 33 1 2.9890 0.9422 2.8868 34 1 2.3286 0.5588 5.2249 35 1 3.6258 -0.9760 6.6441 36 1 5.5941 -2.1346 5.7323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121983789.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:10 Heat of formation + Delta-G solvation = 69.858860 kcal Electronic energy + Delta-G solvation = -19648.245403 eV Core-core repulsion = 16711.028129 eV Total energy + Delta-G solvation = -2937.217274 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.78881 -38.92563 -37.30075 -37.26328 -34.72851 -33.02105 -32.12979 -31.75111 -29.39339 -26.78193 -25.13835 -24.35214 -22.66686 -21.28996 -19.44238 -19.04968 -18.53055 -16.95916 -16.75980 -16.51928 -16.20714 -15.64639 -15.46278 -15.18941 -14.85801 -14.79361 -14.45590 -14.09839 -13.95202 -13.71086 -13.61047 -13.39080 -13.28070 -13.05321 -13.00527 -12.66047 -12.58151 -12.34289 -12.06148 -11.93416 -11.68246 -11.50020 -11.41351 -10.72843 -9.75827 -9.65262 -8.93671 -8.22762 -6.24995 -0.01387 0.50798 1.37600 1.39795 1.48338 1.81237 1.85135 1.85421 2.16894 2.37951 2.89541 3.06076 3.12606 3.14848 3.50542 3.83840 3.96951 4.17523 4.21733 4.31455 4.43469 4.49134 4.62992 4.64996 4.69347 4.84936 4.95387 5.04513 5.15644 5.18317 5.28946 5.51104 5.58287 5.63895 5.64647 5.98727 6.06765 6.36004 6.64457 6.66356 6.68579 6.83067 7.37940 8.94242 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.006744 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.931775 B = 4151.063139 C = 5473.800025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.245 3.755 3 C -0.064 4.064 4 C 0.074 3.926 5 N -0.532 5.532 6 C 0.166 3.834 7 C -0.506 4.506 8 H 0.034 0.966 9 C 0.004 3.996 10 N -0.953 5.953 11 Si 0.938 3.062 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.228 1.228 15 C 0.071 3.929 16 C -0.033 4.033 17 C -0.116 4.116 18 C -0.083 4.083 19 C -0.118 4.118 20 C -0.075 4.075 21 C -0.035 4.035 22 C 0.276 3.724 23 N -0.476 5.476 24 H 0.145 0.855 25 H 0.111 0.889 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.024 0.976 29 H 0.018 0.982 30 H 0.263 0.737 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.800 14.815 18.229 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.072 4.072 3 C -0.106 4.106 4 C -0.055 4.055 5 N -0.255 5.255 6 C 0.040 3.960 7 C -0.544 4.544 8 H 0.052 0.948 9 C -0.192 4.192 10 N -0.595 5.595 11 Si 0.762 3.238 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.150 1.150 15 C -0.056 4.056 16 C -0.036 4.036 17 C -0.135 4.135 18 C -0.101 4.101 19 C -0.136 4.136 20 C -0.095 4.095 21 C -0.039 4.039 22 C -0.038 4.038 23 N -0.153 5.153 24 H 0.162 0.838 25 H 0.129 0.871 26 H 0.075 0.925 27 H 0.111 0.889 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.170 0.830 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.870 13.454 17.615 22.501 hybrid contribution 0.655 0.354 -1.379 1.567 sum -3.215 13.807 16.236 21.554 Atomic orbital electron populations 1.81200 1.14303 1.10696 1.10906 1.29277 0.95131 0.91417 0.91389 1.20220 0.80699 1.03425 1.06213 1.21982 0.87187 0.95361 1.01011 1.62029 1.06787 1.43247 1.13394 1.20059 0.94636 0.95430 0.85913 1.21260 1.35372 0.99037 0.98741 0.94797 1.25842 0.96975 0.98057 0.98344 1.70072 1.48733 1.26321 1.14356 0.85855 0.79044 0.81355 0.77567 1.20515 1.21439 1.15023 1.21332 1.00435 0.94099 0.89718 1.19848 0.94939 0.94749 0.94104 1.21281 0.95263 1.00212 0.96724 1.21751 0.99283 0.96088 0.93002 1.21422 0.94134 0.96317 1.01706 1.21375 0.97377 0.98640 0.92105 1.16117 0.92327 1.00087 0.95389 1.26194 0.92905 0.92629 0.92106 1.81263 1.14243 1.10618 1.09133 0.83802 0.87097 0.92532 0.88861 0.95862 0.96344 0.92818 0.89716 0.91647 0.83019 0.82386 0.82212 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.44 18.54 20.01 0.37 -15.07 16 2 C 0.24 6.40 15.43 89.44 1.38 7.78 16 3 C -0.06 -1.43 5.06 28.79 0.15 -1.28 16 4 C 0.07 2.16 4.91 86.30 0.42 2.59 16 5 N -0.53 -18.02 4.65 -905.36 -4.21 -22.23 16 6 C 0.17 6.91 3.64 85.56 0.31 7.22 16 7 C -0.51 -27.67 9.15 25.60 0.23 -27.44 16 8 H 0.03 2.12 7.65 -2.91 -0.02 2.10 16 9 C 0.00 0.25 5.47 84.65 0.46 0.71 16 10 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 11 Si 0.94 42.29 27.44 68.60 1.88 44.18 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 14 H -0.23 -8.74 6.58 99.48 0.66 -8.09 16 15 C 0.07 1.75 4.33 85.56 0.37 2.12 16 16 C -0.03 -0.68 4.61 -19.60 -0.09 -0.78 16 17 C -0.12 -1.57 8.63 22.23 0.19 -1.38 16 18 C -0.08 -0.83 10.04 22.33 0.22 -0.61 16 19 C -0.12 -1.27 10.03 22.23 0.22 -1.05 16 20 C -0.07 -1.22 9.76 22.54 0.22 -1.00 16 21 C -0.04 -0.82 5.73 -21.36 -0.12 -0.95 16 22 C 0.28 8.86 14.00 88.33 1.24 10.09 16 23 N -0.48 -18.67 18.54 19.01 0.35 -18.31 16 24 H 0.14 1.97 6.00 -2.39 -0.01 1.96 16 25 H 0.11 2.78 6.31 -2.39 -0.02 2.77 16 26 H 0.06 2.11 7.18 -2.39 -0.02 2.09 16 27 H 0.09 2.28 6.46 -2.39 -0.02 2.27 16 28 H 0.02 0.88 5.01 -2.39 -0.01 0.87 16 29 H 0.02 0.80 7.17 -2.39 -0.02 0.78 16 30 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 31 H 0.09 1.47 5.92 -2.39 -0.01 1.45 16 32 H 0.07 1.85 7.21 -2.39 -0.02 1.83 16 33 H 0.15 1.33 7.79 -2.91 -0.02 1.31 16 34 H 0.16 0.68 8.06 -2.91 -0.02 0.65 16 35 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 36 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -76.68 313.90 4.96 -71.71 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: 1.06 Total: 3.06 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.21 Total: -3.96 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -3.19 Total: -114.99 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.88 Total: 44.18 kcal Total: -76.68 4.96 -71.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121983789.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.573 kcal (2) G-P(sol) polarization free energy of solvation -76.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds