Wall clock time and date at job start Mon Mar 30 2020 00:51:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.46509 * 119.99823 * 2 1
4 4 C 1.50697 * 109.47085 * 274.38602 * 3 2 1
5 5 C 1.36126 * 120.17402 * 4.88861 * 4 3 2
6 6 C 1.39330 * 120.99613 * 179.77566 * 5 4 3
7 7 C 1.36128 * 120.98449 * 0.47675 * 6 5 4
8 8 C 1.40500 * 119.65119 * 359.78253 * 7 6 5
9 9 C 1.40544 * 121.28089 * 180.02562 * 8 7 6
10 10 C 1.36086 * 119.65521 * 179.97438 * 9 8 7
11 11 C 1.39387 * 120.99181 * 0.02562 * 10 9 8
12 12 C 1.36090 * 120.99040 * 359.95754 * 11 10 9
13 13 C 1.40503 * 120.17346 * 185.16419 * 4 3 2
14 14 C 1.34773 * 120.00228 * 179.72287 * 2 1 3
15 15 O 1.21690 * 120.00097 * 180.02562 * 14 2 1
16 16 C 1.46369 * 119.99948 * 0.02562 * 14 2 1
17 17 H 1.07995 * 120.00287 * 0.02562 * 16 14 2
18 18 C 1.40056 * 120.00091 * 180.02562 * 16 14 2
19 19 N 1.30671 * 119.99887 * 359.97438 * 18 16 14
20 20 Si 1.86798 * 120.00027 * 180.02562 * 18 16 14
21 21 H 1.48506 * 109.47144 * 359.97438 * 20 18 16
22 22 H 1.48498 * 109.47521 * 119.99603 * 20 18 16
23 23 H 1.48497 * 109.46844 * 239.99504 * 20 18 16
24 24 H 1.09001 * 109.47277 * 264.89453 * 1 2 3
25 25 H 1.08999 * 109.47443 * 24.89431 * 1 2 3
26 26 H 1.09002 * 109.47147 * 144.89038 * 1 2 3
27 27 H 1.08998 * 109.46987 * 34.38251 * 3 2 1
28 28 H 1.09001 * 109.47000 * 154.38655 * 3 2 1
29 29 H 1.08010 * 119.50416 * 359.97438 * 5 4 3
30 30 H 1.07997 * 119.51123 * 180.23760 * 6 5 4
31 31 H 1.08001 * 120.17723 * 179.75622 * 7 6 5
32 32 H 1.07998 * 120.17538 * 359.95488 * 9 8 7
33 33 H 1.08002 * 119.51103 * 180.02562 * 10 9 8
34 34 H 1.07999 * 119.50640 * 179.97438 * 11 10 9
35 35 H 1.08002 * 120.16860 * 180.02562 * 12 11 10
36 36 H 0.97001 * 119.99876 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.3545 1.7582 -1.4166
5 6 1.7606 1.0879 -2.4418
6 6 1.8907 1.5278 -3.7575
7 6 2.6234 2.6352 -4.0569
8 6 3.2556 3.3502 -3.0258
9 6 4.0198 4.4983 -3.2960
10 6 4.6174 5.1659 -2.2717
11 6 4.4840 4.7281 -0.9551
12 6 3.7516 3.6209 -0.6556
13 6 3.1195 2.9053 -1.6868
14 6 2.1389 -1.1671 0.0056
15 8 3.3558 -1.1671 0.0061
16 6 1.4071 -2.4347 0.0112
17 1 0.3271 -2.4348 0.0104
18 6 2.1074 -3.6476 0.0176
19 7 3.4141 -3.6476 0.0181
20 14 1.1734 -5.2653 0.0240
21 1 -0.2867 -4.9940 0.0217
22 1 1.5334 -6.0497 -1.1845
23 1 1.5309 -6.0384 1.2404
24 1 -0.3634 -0.0915 1.0236
25 1 -0.3634 0.9322 -0.4326
26 1 -0.3633 -0.8407 -0.5911
27 1 1.6446 2.0075 0.5803
28 1 3.1817 1.1201 0.4443
29 1 1.1771 0.2035 -2.2319
30 1 1.4061 0.9798 -4.5520
31 1 2.7188 2.9623 -5.0818
32 1 4.1325 4.8488 -4.3113
33 1 5.2038 6.0481 -2.4820
34 1 4.9689 5.2760 -0.1607
35 1 3.6568 3.2938 0.3694
36 1 3.8991 -4.4876 0.0222
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000153605452.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:51:09
Heat of formation + Delta-G solvation = 10.915506 kcal
Electronic energy + Delta-G solvation = -19831.488789 eV
Core-core repulsion = 16859.422788 eV
Total energy + Delta-G solvation = -2972.066001 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 269.116 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.20603 -37.83915 -36.09793 -34.22518 -32.50380 -32.43528 -30.01427 -29.31748
-27.13342 -25.94663 -24.39349 -22.99213 -22.62745 -20.76843 -19.00731 -17.17538
-16.73635 -16.48530 -15.91477 -15.56401 -14.61007 -14.40562 -14.21758 -13.74994
-13.56977 -13.43919 -13.11096 -12.79676 -12.42186 -12.06573 -11.70494 -11.63511
-11.49450 -11.42727 -11.15760 -10.99781 -10.89235 -10.59801 -10.45990 -10.30735
-10.14672 -9.44111 -8.88384 -8.30725 -7.62408 -7.49945 -7.30515 -6.21544
-4.67307 0.82080 1.31461 2.35274 3.11093 3.19577 3.23512 3.30368
4.06237 4.40318 4.51025 4.54867 4.84164 5.03229 5.11562 5.30190
5.33791 5.43734 5.63110 5.66802 5.71928 5.86615 5.92463 5.95533
6.00207 6.18169 6.32117 6.36066 6.47686 6.50778 6.54229 6.57910
6.66776 6.88884 7.06785 7.12027 7.35707 7.42264 7.57593 8.09975
8.31787 9.00173 9.38242 10.55242 10.73991
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.029854 B = 0.004826 C = 0.004682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 937.662684 B = 5800.753638 C = 5979.296021
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.101 3.899
2 N -0.647 5.647
3 C 0.160 3.840
4 C -0.071 4.071
5 C -0.104 4.104
6 C -0.104 4.104
7 C -0.129 4.129
8 C -0.052 4.052
9 C -0.110 4.110
10 C -0.123 4.123
11 C -0.128 4.128
12 C -0.097 4.097
13 C -0.047 4.047
14 C 0.555 3.445
15 O -0.573 6.573
16 C -0.543 4.543
17 H 0.073 0.927
18 C 0.087 3.913
19 N -0.766 5.766
20 Si 0.906 3.094
21 H -0.263 1.263
22 H -0.276 1.276
23 H -0.276 1.276
24 H 0.034 0.966
25 H 0.044 0.956
26 H 0.068 0.932
27 H 0.068 0.932
28 H 0.091 0.909
29 H 0.133 0.867
30 H 0.118 0.882
31 H 0.120 0.880
32 H 0.121 0.879
33 H 0.117 0.883
34 H 0.118 0.882
35 H 0.127 0.873
36 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.281 13.321 -4.621 14.477
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.043 4.043
2 N -0.385 5.385
3 C 0.035 3.965
4 C -0.073 4.073
5 C -0.122 4.122
6 C -0.122 4.122
7 C -0.147 4.147
8 C -0.052 4.052
9 C -0.128 4.128
10 C -0.141 4.141
11 C -0.146 4.146
12 C -0.115 4.115
13 C -0.047 4.047
14 C 0.361 3.639
15 O -0.455 6.455
16 C -0.579 4.579
17 H 0.091 0.909
18 C -0.133 4.133
19 N -0.394 5.394
20 Si 0.730 3.270
21 H -0.187 1.187
22 H -0.202 1.202
23 H -0.202 1.202
24 H 0.053 0.947
25 H 0.062 0.938
26 H 0.086 0.914
27 H 0.086 0.914
28 H 0.109 0.891
29 H 0.151 0.849
30 H 0.136 0.864
31 H 0.138 0.862
32 H 0.139 0.861
33 H 0.135 0.865
34 H 0.137 0.863
35 H 0.145 0.855
36 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -2.440 13.190 -4.602 14.182
hybrid contribution -0.479 -0.829 -0.098 0.962
sum -2.919 12.362 -4.700 13.543
Atomic orbital electron populations
1.21411 0.82047 1.00671 1.00157 1.48002 1.05176 1.05071 1.80247
1.19948 0.98830 0.86660 0.91055 1.20515 0.95366 0.93401 0.97980
1.20924 0.99759 0.99801 0.91701 1.20906 0.98399 0.96164 0.96770
1.20883 0.99215 0.96624 0.97935 1.18042 0.98408 0.95829 0.92896
1.20944 0.97775 0.95052 0.99034 1.20755 1.00310 1.00084 0.92989
1.20768 0.99950 0.97386 0.96509 1.21093 0.96677 0.94905 0.98858
1.17949 0.98371 0.95589 0.92812 1.18288 0.87019 0.82196 0.76375
1.90611 1.14018 1.86103 1.54746 1.21029 0.93734 0.89148 1.54017
0.90913 1.25742 0.94593 1.00330 0.92612 1.70033 1.07077 1.27203
1.35116 0.86346 0.80525 0.81851 0.78247 1.18718 1.20167 1.20157
0.94719 0.93763 0.91352 0.91432 0.89056 0.84949 0.86355 0.86208
0.86107 0.86515 0.86348 0.85534 0.92142
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.83 8.86 59.85 0.53 2.36 16
2 N -0.65 -14.40 1.73 -184.63 -0.32 -14.72 16
3 C 0.16 3.14 4.56 -5.19 -0.02 3.12 16
4 C -0.07 -1.35 5.88 -104.53 -0.61 -1.96 16
5 C -0.10 -1.96 9.11 -39.93 -0.36 -2.32 16
6 C -0.10 -1.68 9.95 -39.93 -0.40 -2.08 16
7 C -0.13 -1.92 9.77 -39.49 -0.39 -2.31 16
8 C -0.05 -0.82 5.74 -106.83 -0.61 -1.43 16
9 C -0.11 -1.45 9.77 -39.49 -0.39 -1.84 16
10 C -0.12 -1.51 9.95 -39.93 -0.40 -1.91 16
11 C -0.13 -1.66 9.95 -39.93 -0.40 -2.06 16
12 C -0.10 -1.48 9.37 -39.49 -0.37 -1.85 16
13 C -0.05 -0.81 5.74 -106.83 -0.61 -1.42 16
14 C 0.56 15.54 7.52 -12.99 -0.10 15.44 16
15 O -0.57 -18.41 14.53 5.20 0.08 -18.33 16
16 C -0.54 -14.98 8.73 -35.63 -0.31 -15.30 16
17 H 0.07 1.83 6.11 -52.49 -0.32 1.51 16
18 C 0.09 2.40 5.50 -17.36 -0.10 2.31 16
19 N -0.77 -22.83 11.83 55.55 0.66 -22.18 16
20 Si 0.91 19.89 29.56 -169.99 -5.02 14.87 16
21 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16
22 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16
23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16
24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
25 H 0.04 0.67 8.03 -51.93 -0.42 0.26 16
26 H 0.07 1.26 6.41 -51.93 -0.33 0.92 16
27 H 0.07 1.12 8.10 -51.93 -0.42 0.69 16
28 H 0.09 2.00 6.99 -51.93 -0.36 1.64 16
29 H 0.13 2.67 6.02 -52.48 -0.32 2.36 16
30 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16
31 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16
32 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16
33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16
34 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16
35 H 0.13 1.77 6.97 -52.49 -0.37 1.40 16
36 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16
LS Contribution 304.74 15.07 4.59 4.59
Total: -1.00 -34.19 304.74 -8.76 -42.95
By element:
Atomic # 1 Polarization: 8.27 SS G_CDS: -4.21 Total: 4.06 kcal
Atomic # 6 Polarization: -6.71 SS G_CDS: -4.54 Total: -11.25 kcal
Atomic # 7 Polarization: -37.24 SS G_CDS: 0.34 Total: -36.90 kcal
Atomic # 8 Polarization: -18.41 SS G_CDS: 0.08 Total: -18.33 kcal
Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal
Total LS contribution 4.59 Total: 4.59 kcal
Total: -34.19 -8.76 -42.95 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000153605452.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.870 kcal
(2) G-P(sol) polarization free energy of solvation -34.191 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.679 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.916 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds