Wall clock time and date at job start Mon Mar 30 2020 00:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46509 * 119.99823 * 2 1 4 4 C 1.50697 * 109.47085 * 274.38602 * 3 2 1 5 5 C 1.36126 * 120.17402 * 4.88861 * 4 3 2 6 6 C 1.39330 * 120.99613 * 179.77566 * 5 4 3 7 7 C 1.36128 * 120.98449 * 0.47675 * 6 5 4 8 8 C 1.40500 * 119.65119 * 359.78253 * 7 6 5 9 9 C 1.40544 * 121.28089 * 180.02562 * 8 7 6 10 10 C 1.36086 * 119.65521 * 179.97438 * 9 8 7 11 11 C 1.39387 * 120.99181 * 0.02562 * 10 9 8 12 12 C 1.36090 * 120.99040 * 359.95754 * 11 10 9 13 13 C 1.40503 * 120.17346 * 185.16419 * 4 3 2 14 14 C 1.34773 * 120.00228 * 179.72287 * 2 1 3 15 15 O 1.21690 * 120.00097 * 180.02562 * 14 2 1 16 16 C 1.46369 * 119.99948 * 0.02562 * 14 2 1 17 17 H 1.07995 * 120.00287 * 0.02562 * 16 14 2 18 18 C 1.40056 * 120.00091 * 180.02562 * 16 14 2 19 19 N 1.30671 * 119.99887 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00027 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47144 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47521 * 119.99603 * 20 18 16 23 23 H 1.48497 * 109.46844 * 239.99504 * 20 18 16 24 24 H 1.09001 * 109.47277 * 264.89453 * 1 2 3 25 25 H 1.08999 * 109.47443 * 24.89431 * 1 2 3 26 26 H 1.09002 * 109.47147 * 144.89038 * 1 2 3 27 27 H 1.08998 * 109.46987 * 34.38251 * 3 2 1 28 28 H 1.09001 * 109.47000 * 154.38655 * 3 2 1 29 29 H 1.08010 * 119.50416 * 359.97438 * 5 4 3 30 30 H 1.07997 * 119.51123 * 180.23760 * 6 5 4 31 31 H 1.08001 * 120.17723 * 179.75622 * 7 6 5 32 32 H 1.07998 * 120.17538 * 359.95488 * 9 8 7 33 33 H 1.08002 * 119.51103 * 180.02562 * 10 9 8 34 34 H 1.07999 * 119.50640 * 179.97438 * 11 10 9 35 35 H 1.08002 * 120.16860 * 180.02562 * 12 11 10 36 36 H 0.97001 * 119.99876 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3545 1.7582 -1.4166 5 6 1.7606 1.0879 -2.4418 6 6 1.8907 1.5278 -3.7575 7 6 2.6234 2.6352 -4.0569 8 6 3.2556 3.3502 -3.0258 9 6 4.0198 4.4983 -3.2960 10 6 4.6174 5.1659 -2.2717 11 6 4.4840 4.7281 -0.9551 12 6 3.7516 3.6209 -0.6556 13 6 3.1195 2.9053 -1.6868 14 6 2.1389 -1.1671 0.0056 15 8 3.3558 -1.1671 0.0061 16 6 1.4071 -2.4347 0.0112 17 1 0.3271 -2.4348 0.0104 18 6 2.1074 -3.6476 0.0176 19 7 3.4141 -3.6476 0.0181 20 14 1.1734 -5.2653 0.0240 21 1 -0.2867 -4.9940 0.0217 22 1 1.5334 -6.0497 -1.1845 23 1 1.5309 -6.0384 1.2404 24 1 -0.3634 -0.0915 1.0236 25 1 -0.3634 0.9322 -0.4326 26 1 -0.3633 -0.8407 -0.5911 27 1 1.6446 2.0075 0.5803 28 1 3.1817 1.1201 0.4443 29 1 1.1771 0.2035 -2.2319 30 1 1.4061 0.9798 -4.5520 31 1 2.7188 2.9623 -5.0818 32 1 4.1325 4.8488 -4.3113 33 1 5.2038 6.0481 -2.4820 34 1 4.9689 5.2760 -0.1607 35 1 3.6568 3.2938 0.3694 36 1 3.8991 -4.4876 0.0222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153605452.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:09 Heat of formation + Delta-G solvation = 10.915506 kcal Electronic energy + Delta-G solvation = -19831.488789 eV Core-core repulsion = 16859.422788 eV Total energy + Delta-G solvation = -2972.066001 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.20603 -37.83915 -36.09793 -34.22518 -32.50380 -32.43528 -30.01427 -29.31748 -27.13342 -25.94663 -24.39349 -22.99213 -22.62745 -20.76843 -19.00731 -17.17538 -16.73635 -16.48530 -15.91477 -15.56401 -14.61007 -14.40562 -14.21758 -13.74994 -13.56977 -13.43919 -13.11096 -12.79676 -12.42186 -12.06573 -11.70494 -11.63511 -11.49450 -11.42727 -11.15760 -10.99781 -10.89235 -10.59801 -10.45990 -10.30735 -10.14672 -9.44111 -8.88384 -8.30725 -7.62408 -7.49945 -7.30515 -6.21544 -4.67307 0.82080 1.31461 2.35274 3.11093 3.19577 3.23512 3.30368 4.06237 4.40318 4.51025 4.54867 4.84164 5.03229 5.11562 5.30190 5.33791 5.43734 5.63110 5.66802 5.71928 5.86615 5.92463 5.95533 6.00207 6.18169 6.32117 6.36066 6.47686 6.50778 6.54229 6.57910 6.66776 6.88884 7.06785 7.12027 7.35707 7.42264 7.57593 8.09975 8.31787 9.00173 9.38242 10.55242 10.73991 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029854 B = 0.004826 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.662684 B = 5800.753638 C = 5979.296021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.647 5.647 3 C 0.160 3.840 4 C -0.071 4.071 5 C -0.104 4.104 6 C -0.104 4.104 7 C -0.129 4.129 8 C -0.052 4.052 9 C -0.110 4.110 10 C -0.123 4.123 11 C -0.128 4.128 12 C -0.097 4.097 13 C -0.047 4.047 14 C 0.555 3.445 15 O -0.573 6.573 16 C -0.543 4.543 17 H 0.073 0.927 18 C 0.087 3.913 19 N -0.766 5.766 20 Si 0.906 3.094 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.034 0.966 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.281 13.321 -4.621 14.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.385 5.385 3 C 0.035 3.965 4 C -0.073 4.073 5 C -0.122 4.122 6 C -0.122 4.122 7 C -0.147 4.147 8 C -0.052 4.052 9 C -0.128 4.128 10 C -0.141 4.141 11 C -0.146 4.146 12 C -0.115 4.115 13 C -0.047 4.047 14 C 0.361 3.639 15 O -0.455 6.455 16 C -0.579 4.579 17 H 0.091 0.909 18 C -0.133 4.133 19 N -0.394 5.394 20 Si 0.730 3.270 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.151 0.849 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.440 13.190 -4.602 14.182 hybrid contribution -0.479 -0.829 -0.098 0.962 sum -2.919 12.362 -4.700 13.543 Atomic orbital electron populations 1.21411 0.82047 1.00671 1.00157 1.48002 1.05176 1.05071 1.80247 1.19948 0.98830 0.86660 0.91055 1.20515 0.95366 0.93401 0.97980 1.20924 0.99759 0.99801 0.91701 1.20906 0.98399 0.96164 0.96770 1.20883 0.99215 0.96624 0.97935 1.18042 0.98408 0.95829 0.92896 1.20944 0.97775 0.95052 0.99034 1.20755 1.00310 1.00084 0.92989 1.20768 0.99950 0.97386 0.96509 1.21093 0.96677 0.94905 0.98858 1.17949 0.98371 0.95589 0.92812 1.18288 0.87019 0.82196 0.76375 1.90611 1.14018 1.86103 1.54746 1.21029 0.93734 0.89148 1.54017 0.90913 1.25742 0.94593 1.00330 0.92612 1.70033 1.07077 1.27203 1.35116 0.86346 0.80525 0.81851 0.78247 1.18718 1.20167 1.20157 0.94719 0.93763 0.91352 0.91432 0.89056 0.84949 0.86355 0.86208 0.86107 0.86515 0.86348 0.85534 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.83 8.86 59.85 0.53 2.36 16 2 N -0.65 -14.40 1.73 -184.63 -0.32 -14.72 16 3 C 0.16 3.14 4.56 -5.19 -0.02 3.12 16 4 C -0.07 -1.35 5.88 -104.53 -0.61 -1.96 16 5 C -0.10 -1.96 9.11 -39.93 -0.36 -2.32 16 6 C -0.10 -1.68 9.95 -39.93 -0.40 -2.08 16 7 C -0.13 -1.92 9.77 -39.49 -0.39 -2.31 16 8 C -0.05 -0.82 5.74 -106.83 -0.61 -1.43 16 9 C -0.11 -1.45 9.77 -39.49 -0.39 -1.84 16 10 C -0.12 -1.51 9.95 -39.93 -0.40 -1.91 16 11 C -0.13 -1.66 9.95 -39.93 -0.40 -2.06 16 12 C -0.10 -1.48 9.37 -39.49 -0.37 -1.85 16 13 C -0.05 -0.81 5.74 -106.83 -0.61 -1.42 16 14 C 0.56 15.54 7.52 -12.99 -0.10 15.44 16 15 O -0.57 -18.41 14.53 5.20 0.08 -18.33 16 16 C -0.54 -14.98 8.73 -35.63 -0.31 -15.30 16 17 H 0.07 1.83 6.11 -52.49 -0.32 1.51 16 18 C 0.09 2.40 5.50 -17.36 -0.10 2.31 16 19 N -0.77 -22.83 11.83 55.55 0.66 -22.18 16 20 Si 0.91 19.89 29.56 -169.99 -5.02 14.87 16 21 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.67 8.03 -51.93 -0.42 0.26 16 26 H 0.07 1.26 6.41 -51.93 -0.33 0.92 16 27 H 0.07 1.12 8.10 -51.93 -0.42 0.69 16 28 H 0.09 2.00 6.99 -51.93 -0.36 1.64 16 29 H 0.13 2.67 6.02 -52.48 -0.32 2.36 16 30 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.13 1.77 6.97 -52.49 -0.37 1.40 16 36 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 LS Contribution 304.74 15.07 4.59 4.59 Total: -1.00 -34.19 304.74 -8.76 -42.95 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.21 Total: 4.06 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -4.54 Total: -11.25 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.34 Total: -36.90 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.08 Total: -18.33 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.19 -8.76 -42.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153605452.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.870 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds