Wall clock time and date at job start Mon Mar 30 2020 00:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46509 * 119.99823 * 2 1 4 4 C 1.50697 * 109.47085 * 274.38602 * 3 2 1 5 5 C 1.36126 * 120.17402 * 4.88861 * 4 3 2 6 6 C 1.39330 * 120.99613 * 179.77566 * 5 4 3 7 7 C 1.36128 * 120.98449 * 0.47675 * 6 5 4 8 8 C 1.40500 * 119.65119 * 359.78253 * 7 6 5 9 9 C 1.40544 * 121.28089 * 180.02562 * 8 7 6 10 10 C 1.36086 * 119.65521 * 179.97438 * 9 8 7 11 11 C 1.39387 * 120.99181 * 0.02562 * 10 9 8 12 12 C 1.36090 * 120.99040 * 359.95754 * 11 10 9 13 13 C 1.40503 * 120.17346 * 185.16419 * 4 3 2 14 14 C 1.34773 * 120.00228 * 179.72287 * 2 1 3 15 15 O 1.21690 * 120.00097 * 180.02562 * 14 2 1 16 16 C 1.46369 * 119.99948 * 0.02562 * 14 2 1 17 17 H 1.07995 * 120.00287 * 0.02562 * 16 14 2 18 18 C 1.40056 * 120.00091 * 180.02562 * 16 14 2 19 19 N 1.30671 * 119.99887 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00027 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47144 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47521 * 119.99603 * 20 18 16 23 23 H 1.48497 * 109.46844 * 239.99504 * 20 18 16 24 24 H 1.09001 * 109.47277 * 264.89453 * 1 2 3 25 25 H 1.08999 * 109.47443 * 24.89431 * 1 2 3 26 26 H 1.09002 * 109.47147 * 144.89038 * 1 2 3 27 27 H 1.08998 * 109.46987 * 34.38251 * 3 2 1 28 28 H 1.09001 * 109.47000 * 154.38655 * 3 2 1 29 29 H 1.08010 * 119.50416 * 359.97438 * 5 4 3 30 30 H 1.07997 * 119.51123 * 180.23760 * 6 5 4 31 31 H 1.08001 * 120.17723 * 179.75622 * 7 6 5 32 32 H 1.07998 * 120.17538 * 359.95488 * 9 8 7 33 33 H 1.08002 * 119.51103 * 180.02562 * 10 9 8 34 34 H 1.07999 * 119.50640 * 179.97438 * 11 10 9 35 35 H 1.08002 * 120.16860 * 180.02562 * 12 11 10 36 36 H 0.97001 * 119.99876 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3545 1.7582 -1.4166 5 6 1.7606 1.0879 -2.4418 6 6 1.8907 1.5278 -3.7575 7 6 2.6234 2.6352 -4.0569 8 6 3.2556 3.3502 -3.0258 9 6 4.0198 4.4983 -3.2960 10 6 4.6174 5.1659 -2.2717 11 6 4.4840 4.7281 -0.9551 12 6 3.7516 3.6209 -0.6556 13 6 3.1195 2.9053 -1.6868 14 6 2.1389 -1.1671 0.0056 15 8 3.3558 -1.1671 0.0061 16 6 1.4071 -2.4347 0.0112 17 1 0.3271 -2.4348 0.0104 18 6 2.1074 -3.6476 0.0176 19 7 3.4141 -3.6476 0.0181 20 14 1.1734 -5.2653 0.0240 21 1 -0.2867 -4.9940 0.0217 22 1 1.5334 -6.0497 -1.1845 23 1 1.5309 -6.0384 1.2404 24 1 -0.3634 -0.0915 1.0236 25 1 -0.3634 0.9322 -0.4326 26 1 -0.3633 -0.8407 -0.5911 27 1 1.6446 2.0075 0.5803 28 1 3.1817 1.1201 0.4443 29 1 1.1771 0.2035 -2.2319 30 1 1.4061 0.9798 -4.5520 31 1 2.7188 2.9623 -5.0818 32 1 4.1325 4.8488 -4.3113 33 1 5.2038 6.0481 -2.4820 34 1 4.9689 5.2760 -0.1607 35 1 3.6568 3.2938 0.3694 36 1 3.8991 -4.4876 0.0222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153605452.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:08 Heat of formation + Delta-G solvation = -8.800039 kcal Electronic energy + Delta-G solvation = -19832.343719 eV Core-core repulsion = 16859.422788 eV Total energy + Delta-G solvation = -2972.920931 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.43143 -39.66395 -37.40958 -35.96913 -34.60316 -33.84469 -31.18130 -30.59659 -28.81961 -27.74883 -26.09757 -24.13655 -23.82094 -22.24256 -20.74249 -18.51638 -18.28328 -17.90931 -17.65972 -17.12419 -16.16503 -15.98841 -15.81373 -15.06779 -14.85051 -14.80275 -14.37598 -14.11636 -14.02689 -13.52419 -13.37221 -13.20567 -13.07875 -13.01591 -12.79103 -12.67935 -12.25224 -12.08911 -11.98173 -11.77941 -11.66143 -10.95320 -10.64997 -9.81398 -9.49295 -9.16362 -8.69730 -8.29314 -6.85031 -0.34044 0.13353 1.16089 1.38988 1.39281 1.57032 2.14084 2.22900 2.45806 2.81696 3.21144 3.56453 3.75557 3.98298 4.00880 4.13691 4.18216 4.33937 4.40715 4.49379 4.51939 4.55925 4.61326 4.70130 4.89630 4.93482 5.00806 5.08071 5.26762 5.35446 5.35883 5.40817 5.57886 5.66194 5.71093 5.79169 5.97553 6.13191 6.17171 6.39476 6.87502 7.39968 8.47204 8.67471 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029854 B = 0.004826 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.662684 B = 5800.753638 C = 5979.296021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.646 5.646 3 C 0.165 3.835 4 C -0.096 4.096 5 C -0.124 4.124 6 C -0.124 4.124 7 C -0.115 4.115 8 C -0.074 4.074 9 C -0.109 4.109 10 C -0.121 4.121 11 C -0.117 4.117 12 C -0.127 4.127 13 C -0.067 4.067 14 C 0.541 3.459 15 O -0.629 6.629 16 C -0.567 4.567 17 H 0.093 0.907 18 C 0.028 3.972 19 N -0.822 5.822 20 Si 0.995 3.005 21 H -0.244 1.244 22 H -0.270 1.270 23 H -0.269 1.269 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.124 0.876 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 14.959 -5.900 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.382 5.382 3 C 0.041 3.959 4 C -0.098 4.098 5 C -0.142 4.142 6 C -0.142 4.142 7 C -0.132 4.132 8 C -0.074 4.074 9 C -0.127 4.127 10 C -0.138 4.138 11 C -0.135 4.135 12 C -0.145 4.145 13 C -0.068 4.068 14 C 0.347 3.653 15 O -0.516 6.516 16 C -0.603 4.603 17 H 0.111 0.889 18 C -0.186 4.186 19 N -0.452 5.452 20 Si 0.814 3.186 21 H -0.167 1.167 22 H -0.195 1.195 23 H -0.194 1.194 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.157 0.843 31 H 0.175 0.825 32 H 0.172 0.828 33 H 0.173 0.827 34 H 0.165 0.835 35 H 0.142 0.858 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.393 14.882 -5.879 16.357 hybrid contribution -0.136 -1.126 0.287 1.169 sum -3.529 13.756 -5.592 15.263 Atomic orbital electron populations 1.21559 0.79362 1.02116 1.01107 1.47793 1.06912 1.04607 1.78859 1.19955 0.97286 0.86063 0.92585 1.20439 0.97297 0.94985 0.97070 1.20902 1.00554 0.99388 0.93369 1.21093 0.99713 0.97376 0.95987 1.21310 0.97096 0.95295 0.99518 1.18438 0.99337 0.97204 0.92386 1.21343 0.96522 0.93742 1.01104 1.21238 0.99615 1.00820 0.92173 1.21197 0.98076 0.96061 0.98119 1.21217 0.98396 0.96340 0.98576 1.18165 0.98704 0.95444 0.94466 1.18645 0.86589 0.84101 0.75949 1.90555 1.16363 1.87437 1.57249 1.21547 0.94883 0.89704 1.54154 0.88872 1.26999 0.95449 1.04972 0.91230 1.70215 1.09605 1.28752 1.36633 0.85015 0.79560 0.75565 0.78450 1.16683 1.19508 1.19441 0.93416 0.90785 0.91848 0.88524 0.92419 0.87321 0.84338 0.82502 0.82768 0.82693 0.83480 0.85779 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.67 8.86 127.77 1.13 4.80 16 2 N -0.65 -30.02 1.73 -856.27 -1.48 -31.50 16 3 C 0.16 6.87 4.56 85.63 0.39 7.26 16 4 C -0.10 -3.83 5.88 -19.80 -0.12 -3.94 16 5 C -0.12 -4.88 9.11 22.04 0.20 -4.68 16 6 C -0.12 -3.98 9.95 22.04 0.22 -3.76 16 7 C -0.11 -3.22 9.77 22.33 0.22 -3.00 16 8 C -0.07 -2.23 5.74 -21.30 -0.12 -2.35 16 9 C -0.11 -2.50 9.77 22.33 0.22 -2.29 16 10 C -0.12 -2.49 9.95 22.05 0.22 -2.27 16 11 C -0.12 -2.75 9.95 22.05 0.22 -2.53 16 12 C -0.13 -3.86 9.37 22.33 0.21 -3.65 16 13 C -0.07 -2.36 5.74 -21.30 -0.12 -2.48 16 14 C 0.54 31.89 7.52 86.36 0.65 32.54 16 15 O -0.63 -43.19 14.53 -4.32 -0.06 -43.26 16 16 C -0.57 -32.18 8.73 24.83 0.22 -31.96 16 17 H 0.09 4.72 6.11 -2.91 -0.02 4.70 16 18 C 0.03 1.60 5.50 85.31 0.47 2.07 16 19 N -0.82 -51.16 11.83 21.84 0.26 -50.90 16 20 Si 0.99 41.20 29.56 68.60 2.03 43.23 16 21 H -0.24 -9.23 7.11 99.48 0.71 -8.53 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 24 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 2.22 8.03 -2.39 -0.02 2.20 16 26 H 0.06 2.34 6.41 -2.39 -0.02 2.33 16 27 H 0.10 3.30 8.10 -2.39 -0.02 3.29 16 28 H 0.06 2.76 6.99 -2.39 -0.02 2.74 16 29 H 0.11 4.66 6.02 -2.91 -0.02 4.65 16 30 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 31 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 32 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 34 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.12 3.65 6.97 -2.91 -0.02 3.63 16 36 H 0.27 15.38 8.29 -92.71 -0.77 14.61 16 Total: -1.00 -79.76 304.74 5.83 -73.93 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 1.09 Total: 24.73 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 4.00 Total: -16.24 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -1.22 Total: -82.40 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.06 Total: -43.26 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -79.76 5.83 -73.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153605452.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.127 kcal (2) G-P(sol) polarization free energy of solvation -79.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds