Wall clock time and date at job start Mon Mar 30 2020 00:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00264 * 2 1 4 4 C 1.53006 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46712 * 184.99672 * 4 3 2 6 6 C 1.53000 * 109.47353 * 305.00331 * 4 3 2 7 7 N 1.46502 * 109.46807 * 65.00113 * 4 3 2 8 8 C 1.39924 * 119.99823 * 154.99363 * 7 4 3 9 9 C 1.38719 * 120.07890 * 0.02562 * 8 7 4 10 10 C 1.38214 * 120.01471 * 179.97438 * 9 8 7 11 11 C 1.38529 * 120.17869 * 359.97438 * 10 9 8 12 12 F 1.35100 * 119.92223 * 179.97438 * 11 10 9 13 13 C 1.38350 * 120.15875 * 0.02659 * 11 10 9 14 14 C 1.38724 * 119.97859 * 359.69557 * 13 11 10 15 15 O 1.35803 * 120.08541 * 180.30120 * 14 13 11 16 16 C 1.34802 * 116.99927 * 354.39667 * 15 14 13 17 17 H 1.07994 * 119.99999 * 5.06744 * 16 15 14 18 18 C 1.38622 * 119.99864 * 185.06504 * 16 15 14 19 19 N 1.31582 * 120.00355 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00270 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46673 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47235 * 119.99913 * 20 18 16 23 23 H 1.48497 * 109.47244 * 240.00378 * 20 18 16 24 24 H 1.09000 * 109.47174 * 59.99191 * 1 2 3 25 25 H 1.09000 * 109.47441 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46909 * 299.99963 * 1 2 3 27 27 H 1.08994 * 109.46832 * 300.00577 * 3 2 1 28 28 H 1.09000 * 109.46861 * 60.00644 * 3 2 1 29 29 H 1.09005 * 109.47061 * 59.99755 * 6 4 3 30 30 H 1.08998 * 109.46712 * 179.97438 * 6 4 3 31 31 H 1.09000 * 109.46965 * 299.99854 * 6 4 3 32 32 H 0.97001 * 120.00579 * 335.00381 * 7 4 3 33 33 H 1.07994 * 119.99386 * 0.02562 * 9 8 7 34 34 H 1.08008 * 119.90656 * 180.02562 * 10 9 8 35 35 H 1.07996 * 120.00943 * 179.97438 * 13 11 10 36 36 H 0.97000 * 120.00417 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.9785 2.1764 0.0902 6 6 3.9781 0.3196 1.1825 7 7 3.9766 0.5638 -1.2509 8 6 5.2683 0.8026 -1.7330 9 6 6.1327 1.6264 -1.0269 10 6 7.4085 1.8609 -1.5040 11 6 7.8283 1.2748 -2.6869 12 9 9.0763 1.5080 -3.1488 13 6 6.9722 0.4520 -3.3970 14 6 5.6923 0.2075 -2.9212 15 8 4.8523 -0.6047 -3.6133 16 6 5.2801 -1.0488 -4.8121 17 1 6.2825 -0.8238 -5.1449 18 6 4.4332 -1.7944 -5.6174 19 7 3.2117 -2.0681 -5.2121 20 14 5.0262 -2.4105 -7.2783 21 1 6.4273 -1.9703 -7.4980 22 1 4.9624 -3.8938 -7.3075 23 1 4.1600 -1.8566 -8.3498 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 1.6887 1.8463 0.8901 29 1 3.5350 -0.6723 1.0929 30 1 5.0647 0.2331 1.1826 31 1 3.6499 0.7814 2.1137 32 1 3.3733 -0.0126 -1.7455 33 1 5.8090 2.0838 -0.1037 34 1 8.0802 2.5022 -0.9526 35 1 7.3019 -0.0034 -4.3191 36 1 2.6190 -2.5895 -5.7758 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155453921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:18 Heat of formation + Delta-G solvation = -90.904441 kcal Electronic energy + Delta-G solvation = -20614.577356 eV Core-core repulsion = 17207.326886 eV Total energy + Delta-G solvation = -3407.250470 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.01435 -39.29473 -38.12063 -36.55449 -35.01069 -32.28808 -31.06391 -29.24421 -27.27996 -27.04310 -25.50826 -25.32168 -22.36749 -21.29094 -20.14815 -18.14423 -17.65331 -16.63419 -16.16955 -15.99285 -15.29318 -15.12197 -14.80553 -14.76084 -14.17872 -14.12047 -13.70489 -13.44929 -13.28205 -12.94666 -12.50673 -12.26055 -12.09939 -11.82657 -11.70330 -11.43473 -11.25564 -11.04957 -10.80005 -10.75717 -10.48403 -10.33677 -9.62278 -9.52973 -9.22265 -8.83117 -7.70113 -6.45197 -6.38513 -3.99925 2.15601 2.27823 3.13392 3.15779 3.21108 3.80604 3.95861 4.07864 4.50674 4.94038 5.01448 5.10961 5.21523 5.27986 5.32272 5.40468 5.42418 5.50450 5.65739 5.72510 5.78203 5.84688 5.92137 6.12039 6.17061 6.47978 6.58731 6.62076 6.85486 7.06287 7.14347 7.19301 7.29326 7.66959 7.96230 8.10434 8.52426 9.01423 9.68524 10.72857 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012048 B = 0.007408 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.526816 B = 3778.876990 C = 5951.587944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.054 3.946 4 C 0.158 3.842 5 H 0.084 0.916 6 C -0.165 4.165 7 N -0.736 5.736 8 C 0.157 3.843 9 C -0.151 4.151 10 C -0.194 4.194 11 C 0.084 3.916 12 F -0.158 7.158 13 C -0.241 4.241 14 C 0.121 3.879 15 O -0.175 6.175 16 C -0.386 4.386 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.939 3.061 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.277 1.277 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.036 0.964 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.413 0.587 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.137 0.863 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.352 6.228 9.675 11.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C -0.024 4.024 4 C 0.052 3.948 5 H 0.102 0.898 6 C -0.223 4.223 7 N -0.370 5.370 8 C 0.055 3.945 9 C -0.175 4.175 10 C -0.215 4.215 11 C 0.063 3.937 12 F -0.137 7.137 13 C -0.262 4.262 14 C 0.065 3.935 15 O -0.079 6.079 16 C -0.462 4.462 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.764 3.236 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.060 0.940 25 H 0.103 0.897 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.250 0.750 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.667 5.935 9.763 11.733 hybrid contribution 0.142 -0.232 -1.131 1.163 sum -2.526 5.703 8.632 10.650 Atomic orbital electron populations 1.22718 0.81319 1.02771 0.99570 1.87954 1.19381 1.27282 1.95284 1.22849 0.93681 0.85356 1.00466 1.20810 0.91342 0.97004 0.85675 0.89848 1.22207 1.01796 1.01537 0.96793 1.44393 1.12515 1.55491 1.24578 1.17133 0.86606 0.97996 0.92744 1.19940 0.93349 1.03157 1.01018 1.20283 0.97415 1.06385 0.97400 1.17223 0.79854 1.01368 0.95283 1.91374 1.39666 1.93685 1.89017 1.20787 0.94524 1.06693 1.04230 1.18605 0.89888 0.92973 0.92003 1.83909 1.39432 1.54261 1.30318 1.21336 0.99840 1.33183 0.91859 0.89087 1.25242 0.95056 0.96793 0.99368 1.70046 1.05857 1.36515 1.37261 0.85664 0.78925 0.78642 0.80340 1.19069 1.20185 1.20211 0.94041 0.89663 0.94532 0.92627 0.92580 0.91435 0.92269 0.92822 0.74990 0.86124 0.86627 0.84509 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.58 9.55 -35.23 -0.34 -5.91 16 3 C 0.05 0.69 5.68 37.16 0.21 0.90 16 4 C 0.16 2.24 2.67 -67.93 -0.18 2.06 16 5 H 0.08 1.05 6.49 -51.93 -0.34 0.72 16 6 C -0.16 -2.20 9.23 37.16 0.34 -1.86 16 7 N -0.74 -13.76 5.23 -51.99 -0.27 -14.03 16 8 C 0.16 3.22 6.66 -83.52 -0.56 2.66 16 9 C -0.15 -2.68 8.85 -39.41 -0.35 -3.03 16 10 C -0.19 -3.55 10.02 -39.48 -0.40 -3.95 16 11 C 0.08 1.73 7.29 -39.43 -0.29 1.44 16 12 F -0.16 -3.18 17.26 2.25 0.04 -3.14 16 13 C -0.24 -5.50 9.14 -39.36 -0.36 -5.86 16 14 C 0.12 2.89 6.67 -38.94 -0.26 2.63 16 15 O -0.18 -4.82 9.00 -0.04 0.00 -4.82 16 16 C -0.39 -10.70 9.49 30.87 0.29 -10.40 16 17 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.72 13.67 55.48 0.76 -23.96 16 20 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.02 7.56 -51.93 -0.39 0.63 16 30 H 0.06 0.83 7.71 -51.93 -0.40 0.42 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.41 8.79 7.75 -40.82 -0.32 8.48 16 33 H 0.12 1.77 6.12 -52.49 -0.32 1.45 16 34 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 35 H 0.14 3.18 5.64 -52.49 -0.30 2.88 16 36 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 309.48 15.07 4.66 4.66 Total: -1.00 -29.97 309.48 -5.13 -35.09 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.43 Total: 9.47 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -0.53 Total: -12.96 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.49 Total: -37.99 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.34 Total: -10.74 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.04 Total: -3.14 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.97 -5.13 -35.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155453921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.810 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds