Wall clock time and date at job start Mon Mar 30 2020 00:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00264 * 2 1 4 4 C 1.53006 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46712 * 184.99672 * 4 3 2 6 6 C 1.53000 * 109.47353 * 305.00331 * 4 3 2 7 7 N 1.46502 * 109.46807 * 65.00113 * 4 3 2 8 8 C 1.39924 * 119.99823 * 154.99363 * 7 4 3 9 9 C 1.38719 * 120.07890 * 0.02562 * 8 7 4 10 10 C 1.38214 * 120.01471 * 179.97438 * 9 8 7 11 11 C 1.38529 * 120.17869 * 359.97438 * 10 9 8 12 12 F 1.35100 * 119.92223 * 179.97438 * 11 10 9 13 13 C 1.38350 * 120.15875 * 0.02659 * 11 10 9 14 14 C 1.38724 * 119.97859 * 359.69557 * 13 11 10 15 15 O 1.35803 * 120.08541 * 180.30120 * 14 13 11 16 16 C 1.34802 * 116.99927 * 354.39667 * 15 14 13 17 17 H 1.07994 * 119.99999 * 5.06744 * 16 15 14 18 18 C 1.38622 * 119.99864 * 185.06504 * 16 15 14 19 19 N 1.31582 * 120.00355 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00270 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46673 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47235 * 119.99913 * 20 18 16 23 23 H 1.48497 * 109.47244 * 240.00378 * 20 18 16 24 24 H 1.09000 * 109.47174 * 59.99191 * 1 2 3 25 25 H 1.09000 * 109.47441 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46909 * 299.99963 * 1 2 3 27 27 H 1.08994 * 109.46832 * 300.00577 * 3 2 1 28 28 H 1.09000 * 109.46861 * 60.00644 * 3 2 1 29 29 H 1.09005 * 109.47061 * 59.99755 * 6 4 3 30 30 H 1.08998 * 109.46712 * 179.97438 * 6 4 3 31 31 H 1.09000 * 109.46965 * 299.99854 * 6 4 3 32 32 H 0.97001 * 120.00579 * 335.00381 * 7 4 3 33 33 H 1.07994 * 119.99386 * 0.02562 * 9 8 7 34 34 H 1.08008 * 119.90656 * 180.02562 * 10 9 8 35 35 H 1.07996 * 120.00943 * 179.97438 * 13 11 10 36 36 H 0.97000 * 120.00417 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.9785 2.1764 0.0902 6 6 3.9781 0.3196 1.1825 7 7 3.9766 0.5638 -1.2509 8 6 5.2683 0.8026 -1.7330 9 6 6.1327 1.6264 -1.0269 10 6 7.4085 1.8609 -1.5040 11 6 7.8283 1.2748 -2.6869 12 9 9.0763 1.5080 -3.1488 13 6 6.9722 0.4520 -3.3970 14 6 5.6923 0.2075 -2.9212 15 8 4.8523 -0.6047 -3.6133 16 6 5.2801 -1.0488 -4.8121 17 1 6.2825 -0.8238 -5.1449 18 6 4.4332 -1.7944 -5.6174 19 7 3.2117 -2.0681 -5.2121 20 14 5.0262 -2.4105 -7.2783 21 1 6.4273 -1.9703 -7.4980 22 1 4.9624 -3.8938 -7.3075 23 1 4.1600 -1.8566 -8.3498 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 1.6887 1.8463 0.8901 29 1 3.5350 -0.6723 1.0929 30 1 5.0647 0.2331 1.1826 31 1 3.6499 0.7814 2.1137 32 1 3.3733 -0.0126 -1.7455 33 1 5.8090 2.0838 -0.1037 34 1 8.0802 2.5022 -0.9526 35 1 7.3019 -0.0034 -4.3191 36 1 2.6190 -2.5895 -5.7758 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155453921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:17 Heat of formation + Delta-G solvation = -110.826967 kcal Electronic energy + Delta-G solvation = -20615.441261 eV Core-core repulsion = 17207.326886 eV Total energy + Delta-G solvation = -3408.114376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.61981 -40.93241 -39.31954 -38.15755 -36.38390 -34.26611 -32.41599 -30.91993 -28.62853 -28.20949 -27.29011 -26.47858 -23.94255 -22.89311 -21.44586 -19.98380 -19.34937 -17.95413 -17.61357 -17.13219 -16.91661 -16.49245 -16.43275 -16.08259 -15.87221 -15.47814 -15.38340 -15.09973 -14.79993 -14.21491 -13.91703 -13.65129 -13.57233 -13.35901 -13.01109 -12.79765 -12.67271 -12.48450 -12.19231 -12.10131 -11.96005 -11.78344 -11.46088 -10.79527 -10.70388 -10.59066 -9.40847 -8.45522 -7.98725 -6.08068 0.50908 0.64501 1.34709 1.41344 1.51503 2.16522 2.58713 2.78896 2.94857 3.12790 3.36198 3.67350 3.89772 4.02945 4.17523 4.26775 4.38951 4.45895 4.52986 4.54423 4.57063 4.68118 4.80661 4.86839 5.00650 5.02856 5.06219 5.14894 5.35959 5.45350 5.47249 5.52435 5.98204 6.07360 6.25698 6.64022 6.86624 6.99882 7.78171 8.76510 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012048 B = 0.007408 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.526816 B = 3778.876990 C = 5951.587944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.054 3.946 4 C 0.150 3.850 5 H 0.110 0.890 6 C -0.157 4.157 7 N -0.740 5.740 8 C 0.156 3.844 9 C -0.138 4.138 10 C -0.162 4.162 11 C 0.061 3.939 12 F -0.156 7.156 13 C -0.247 4.247 14 C 0.077 3.923 15 O -0.217 6.217 16 C -0.408 4.408 17 H 0.092 0.908 18 C -0.017 4.017 19 N -0.912 5.912 20 Si 1.011 2.989 21 H -0.258 1.258 22 H -0.268 1.268 23 H -0.268 1.268 24 H 0.038 0.962 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.094 0.906 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.396 0.604 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.120 0.880 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 8.187 11.699 14.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.023 4.023 4 C 0.045 3.955 5 H 0.128 0.872 6 C -0.216 4.216 7 N -0.370 5.370 8 C 0.053 3.947 9 C -0.161 4.161 10 C -0.181 4.181 11 C 0.040 3.960 12 F -0.135 7.135 13 C -0.268 4.268 14 C 0.024 3.976 15 O -0.124 6.124 16 C -0.485 4.485 17 H 0.110 0.890 18 C -0.215 4.215 19 N -0.550 5.550 20 Si 0.832 3.168 21 H -0.182 1.182 22 H -0.193 1.193 23 H -0.193 1.193 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.112 0.888 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.230 0.770 33 H 0.183 0.817 34 H 0.176 0.824 35 H 0.138 0.862 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.910 7.940 11.845 14.387 hybrid contribution -0.008 -0.659 -1.508 1.646 sum -1.917 7.281 10.337 12.788 Atomic orbital electron populations 1.22860 0.79856 1.03326 1.00741 1.87916 1.21164 1.28615 1.95535 1.22929 0.92629 0.84937 1.01828 1.21224 0.92670 0.97847 0.83734 0.87236 1.22131 1.01195 1.00366 0.97869 1.44687 1.11521 1.55036 1.25799 1.17484 0.87855 0.97543 0.91790 1.20422 0.92452 1.01505 1.01742 1.20811 0.97748 1.04046 0.95541 1.17331 0.79930 1.02275 0.96448 1.91376 1.39283 1.93670 1.89183 1.20840 0.94903 1.07047 1.03995 1.19118 0.90340 0.94515 0.93637 1.83877 1.40900 1.56733 1.30849 1.21701 1.00237 1.33837 0.92707 0.89020 1.26384 0.95125 0.96790 1.03206 1.70171 1.07333 1.38374 1.39105 0.84623 0.78725 0.78218 0.75263 1.18206 1.19327 1.19259 0.94305 0.89590 0.91812 0.93471 0.88827 0.93940 0.92781 0.89429 0.77031 0.81726 0.82419 0.86243 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -11.84 9.55 -148.98 -1.42 -13.26 16 3 C 0.05 1.25 5.68 71.98 0.41 1.66 16 4 C 0.15 3.85 2.67 44.99 0.12 3.97 16 5 H 0.11 2.25 6.49 -2.39 -0.02 2.23 16 6 C -0.16 -3.76 9.23 71.98 0.66 -3.09 16 7 N -0.74 -27.48 5.23 -318.40 -1.66 -29.14 16 8 C 0.16 6.31 6.66 38.27 0.25 6.57 16 9 C -0.14 -4.39 8.85 22.38 0.20 -4.19 16 10 C -0.16 -5.26 10.02 22.33 0.22 -5.03 16 11 C 0.06 2.45 7.29 22.37 0.16 2.61 16 12 F -0.16 -6.03 17.26 44.97 0.78 -5.26 16 13 C -0.25 -11.56 9.14 22.41 0.20 -11.35 16 14 C 0.08 3.80 6.67 22.69 0.15 3.95 16 15 O -0.22 -12.69 9.00 -23.05 -0.21 -12.90 16 16 C -0.41 -23.95 9.49 67.91 0.64 -23.30 16 17 H 0.09 5.12 5.21 -2.91 -0.02 5.11 16 18 C -0.02 -0.96 5.49 84.82 0.47 -0.50 16 19 N -0.91 -55.03 13.67 21.61 0.30 -54.74 16 20 Si 1.01 43.74 29.55 68.60 2.03 45.77 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 24 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 1.23 7.56 -2.38 -0.02 1.21 16 30 H 0.05 1.33 7.71 -2.39 -0.02 1.32 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.40 17.59 7.75 -92.71 -0.72 16.87 16 33 H 0.17 3.82 6.12 -2.91 -0.02 3.80 16 34 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 35 H 0.12 5.87 5.64 -2.91 -0.02 5.85 16 36 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -69.77 309.48 4.94 -64.83 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.39 Total: 31.55 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 4.75 Total: -26.86 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -1.37 Total: -83.88 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -1.63 Total: -26.16 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.78 Total: -5.26 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -69.77 4.94 -64.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155453921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.997 kcal (2) G-P(sol) polarization free energy of solvation -69.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds