Wall clock time and date at job start Mon Mar 30 2020 00:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99784 * 2 1 4 4 C 1.50704 * 109.47188 * 269.99986 * 3 2 1 5 5 H 1.07993 * 119.99853 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99659 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00370 * 0.02562 * 6 4 3 8 8 Si 1.86810 * 120.00091 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46966 * 89.99702 * 8 6 4 10 10 H 1.48493 * 109.47124 * 210.00093 * 8 6 4 11 11 H 1.48501 * 109.46391 * 329.99822 * 8 6 4 12 12 C 1.34777 * 119.99762 * 180.02562 * 2 1 3 13 13 O 1.21287 * 119.99762 * 179.97438 * 12 2 1 14 14 C 1.50695 * 120.00304 * 359.97438 * 12 2 1 15 15 N 1.46497 * 109.47265 * 180.02562 * 14 12 2 16 16 C 1.46415 * 119.53437 * 269.97763 * 15 14 12 17 17 C 1.53364 * 109.41467 * 144.00620 * 16 15 14 18 18 C 1.50807 * 109.00705 * 47.02132 * 17 16 15 19 19 O 1.21233 * 120.01980 * 145.62560 * 18 17 16 20 20 N 1.34569 * 119.96446 * 325.34354 * 18 17 16 21 21 C 1.34286 * 119.53702 * 89.99804 * 15 14 12 22 22 O 1.21539 * 119.20750 * 5.69273 * 21 15 14 23 23 H 1.09000 * 109.46600 * 269.99688 * 1 2 3 24 24 H 1.08998 * 109.46996 * 29.99432 * 1 2 3 25 25 H 1.08996 * 109.47077 * 149.99875 * 1 2 3 26 26 H 1.08991 * 109.47268 * 30.00334 * 3 2 1 27 27 H 1.09002 * 109.46692 * 150.00413 * 3 2 1 28 28 H 0.97006 * 120.00138 * 179.97438 * 7 6 4 29 29 H 1.09006 * 109.47300 * 59.99935 * 14 12 2 30 30 H 1.09000 * 109.47535 * 300.00138 * 14 12 2 31 31 H 1.08997 * 109.46076 * 264.18235 * 16 15 14 32 32 H 1.09000 * 109.46310 * 24.15290 * 16 15 14 33 33 H 1.08997 * 109.71839 * 287.09225 * 17 16 15 34 34 H 1.08996 * 109.49190 * 166.80558 * 17 16 15 35 35 H 0.96998 * 119.50582 * 184.71384 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5550 3.6171 -0.6731 8 14 3.4376 3.4172 -3.4339 9 1 2.3077 4.2608 -3.8997 10 1 4.6982 4.1995 -3.4967 11 1 3.5538 2.2203 -4.3051 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 7 2.3374 -3.5858 -0.0005 16 6 2.8060 -4.1347 -1.2744 17 6 4.2771 -4.5472 -1.1414 18 6 4.4522 -5.3389 0.1302 19 8 5.2533 -6.2478 0.1733 20 7 3.7227 -5.0323 1.2186 21 6 2.7676 -4.0890 1.1678 22 8 2.2808 -3.6815 2.2042 23 1 -0.3632 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3633 -0.8899 -0.5138 26 1 1.6085 2.0283 0.5138 27 1 3.1499 1.1383 0.5138 28 1 4.0325 4.4427 -0.8503 29 1 0.7584 -2.5299 -0.8903 30 1 0.7591 -2.5303 0.8897 31 1 2.2040 -5.0041 -1.5386 32 1 2.7116 -3.3776 -2.0528 33 1 4.9067 -3.6581 -1.1065 34 1 4.5610 -5.1623 -1.9953 35 1 3.8888 -5.4996 2.0522 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000208270782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:15 Heat of formation + Delta-G solvation = -114.505199 kcal Electronic energy + Delta-G solvation = -21024.665284 eV Core-core repulsion = 17636.311370 eV Total energy + Delta-G solvation = -3388.353914 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.72879 -40.68101 -39.83305 -37.30972 -36.50762 -35.72454 -34.69855 -32.52258 -30.34357 -28.43845 -27.15227 -26.02320 -24.94255 -23.85984 -20.73893 -19.74543 -19.36881 -18.75029 -18.65002 -18.17365 -17.39057 -17.23838 -16.54442 -16.28712 -15.87236 -15.69252 -15.64830 -15.21612 -14.45480 -14.40366 -14.12183 -13.76503 -13.56360 -13.43072 -13.08365 -12.98652 -12.74543 -12.56900 -12.48987 -12.17518 -11.84675 -11.67818 -11.41183 -11.38551 -10.96432 -10.62520 -9.84658 -9.39136 -8.19881 -6.35276 0.61717 1.25988 1.39857 1.42580 1.52678 1.83381 1.95748 2.10680 2.37820 2.57115 3.10246 3.37353 3.58994 3.76118 3.99946 4.11280 4.35881 4.44967 4.53055 4.57932 4.78741 4.83959 4.93369 4.98698 5.02700 5.12145 5.25503 5.42515 5.58374 5.85226 6.07294 6.27843 6.39545 6.71867 6.80010 7.02584 7.30461 7.48318 8.87442 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024163 B = 0.005058 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.501003 B = 5534.884531 C = 6094.133924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.608 5.608 3 C 0.259 3.741 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.971 3.029 9 H -0.264 1.264 10 H -0.287 1.287 11 H -0.266 1.266 12 C 0.476 3.524 13 O -0.591 6.591 14 C 0.120 3.880 15 N -0.596 5.596 16 C 0.108 3.892 17 C -0.155 4.155 18 C 0.531 3.469 19 O -0.536 6.536 20 N -0.671 5.671 21 C 0.712 3.288 22 O -0.595 6.595 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.106 0.894 26 H 0.019 0.981 27 H -0.009 1.009 28 H 0.265 0.735 29 H 0.163 0.837 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.157 0.843 35 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.318 -16.645 -4.251 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.340 5.340 3 C 0.137 3.863 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.795 3.205 9 H -0.189 1.189 10 H -0.213 1.213 11 H -0.190 1.190 12 C 0.263 3.737 13 O -0.472 6.472 14 C -0.006 4.006 15 N -0.331 5.331 16 C -0.013 4.013 17 C -0.195 4.195 18 C 0.321 3.679 19 O -0.411 6.411 20 N -0.339 5.339 21 C 0.414 3.586 22 O -0.473 6.473 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.124 0.876 26 H 0.037 0.963 27 H 0.009 0.991 28 H 0.074 0.926 29 H 0.180 0.820 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.175 0.825 35 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -7.499 -16.645 -3.842 18.656 hybrid contribution 0.846 0.811 0.163 1.183 sum -6.654 -15.834 -3.679 17.564 Atomic orbital electron populations 1.22018 0.77492 1.04696 1.02572 1.48174 1.08591 1.06181 1.71056 1.18731 0.90829 0.80482 0.96238 1.21698 1.36449 1.06437 0.92850 0.91957 1.25928 0.95017 0.96562 1.02013 1.70080 1.39119 1.14882 1.33292 0.85365 0.77771 0.78378 0.78981 1.18950 1.21287 1.19009 1.21879 0.88380 0.87040 0.76374 1.90638 1.16431 1.87969 1.52135 1.21574 0.90198 0.80361 1.08493 1.46794 1.46675 1.34426 1.05197 1.22075 0.92774 1.01816 0.84627 1.22395 0.99674 1.01983 0.95436 1.21479 0.78095 0.82495 0.85855 1.90760 1.35255 1.30504 1.84613 1.44203 1.34572 1.38863 1.16217 1.15716 0.79432 0.78880 0.84566 1.90958 1.60480 1.62511 1.33352 0.91748 0.91275 0.87564 0.96301 0.99121 0.92572 0.81960 0.85729 0.86234 0.86750 0.87823 0.82521 0.73173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.93 10.24 127.77 1.31 3.24 16 2 N -0.61 -24.17 2.86 -851.14 -2.43 -26.60 16 3 C 0.26 13.72 5.16 85.64 0.44 14.16 16 4 C -0.54 -29.59 9.39 25.60 0.24 -29.35 16 5 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 6 C 0.00 0.18 5.46 84.65 0.46 0.65 16 7 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 8 Si 0.97 43.31 29.54 68.60 2.03 45.33 16 9 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 12 C 0.48 18.13 7.74 87.66 0.68 18.81 16 13 O -0.59 -28.78 16.01 -3.05 -0.05 -28.83 16 14 C 0.12 2.82 4.39 85.63 0.38 3.19 16 15 N -0.60 -13.99 2.28 -844.98 -1.93 -15.92 16 16 C 0.11 1.62 6.60 86.52 0.57 2.19 16 17 C -0.16 -2.73 6.30 30.00 0.19 -2.54 16 18 C 0.53 12.44 7.75 87.72 0.68 13.12 16 19 O -0.54 -15.36 17.93 -2.88 -0.05 -15.41 16 20 N -0.67 -16.41 5.18 -441.64 -2.29 -18.70 16 21 C 0.71 20.36 8.22 179.34 1.47 21.83 16 22 O -0.60 -21.28 16.57 -3.84 -0.06 -21.34 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 1.92 8.07 -2.39 -0.02 1.90 16 25 H 0.11 1.71 6.44 -2.39 -0.02 1.69 16 26 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 27 H -0.01 -0.59 7.42 -2.39 -0.02 -0.60 16 28 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 29 H 0.16 2.12 7.32 -2.38 -0.02 2.10 16 30 H 0.12 2.80 7.23 -2.39 -0.02 2.78 16 31 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 1.57 8.01 -2.39 -0.02 1.55 16 33 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 34 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.43 9.46 8.86 -92.71 -0.82 8.64 16 Total: -1.00 -84.56 306.33 2.22 -82.33 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.30 Total: 9.81 kcal Atomic # 6 Polarization: 38.88 SS G_CDS: 6.42 Total: 45.31 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -6.36 Total: -117.20 kcal Atomic # 8 Polarization: -65.42 SS G_CDS: -0.16 Total: -65.59 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -84.56 2.22 -82.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000208270782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.172 kcal (2) G-P(sol) polarization free energy of solvation -84.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds