Wall clock time and date at job start Mon Mar 30 2020 00:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46507 * 119.99859 * 2 1 4 4 C 1.50700 * 109.46751 * 269.99637 * 3 2 1 5 5 C 1.39376 * 119.50276 * 270.29012 * 4 3 2 6 6 C 1.36097 * 120.98188 * 180.27807 * 5 4 3 7 7 C 1.40529 * 119.65776 * 359.71644 * 6 5 4 8 8 C 1.40540 * 121.28571 * 180.02562 * 7 6 5 9 9 C 1.36086 * 119.65722 * 180.02562 * 8 7 6 10 10 C 1.39375 * 120.98568 * 359.95852 * 9 8 7 11 11 C 1.36085 * 120.99300 * 0.02562 * 10 9 8 12 12 C 1.40542 * 119.65728 * 0.02562 * 11 10 9 13 13 C 1.36086 * 119.50513 * 90.00423 * 4 3 2 14 14 C 1.34774 * 120.00043 * 179.97438 * 2 1 3 15 15 O 1.21687 * 119.99706 * 180.02562 * 14 2 1 16 16 C 1.46369 * 119.99931 * 0.02562 * 14 2 1 17 17 H 1.07995 * 120.00286 * 355.23834 * 16 14 2 18 18 C 1.40052 * 120.00236 * 175.24349 * 16 14 2 19 19 N 1.30677 * 119.99810 * 6.27348 * 18 16 14 20 20 Si 1.86798 * 120.00363 * 186.28403 * 18 16 14 21 21 H 1.48495 * 109.47327 * 94.97490 * 20 18 16 22 22 H 1.48500 * 109.47182 * 214.98090 * 20 18 16 23 23 H 1.48502 * 109.47027 * 334.97905 * 20 18 16 24 24 H 1.08998 * 109.46916 * 90.00308 * 1 2 3 25 25 H 1.09000 * 109.46889 * 210.00614 * 1 2 3 26 26 H 1.09002 * 109.47187 * 329.99946 * 1 2 3 27 27 H 1.09004 * 109.46599 * 149.99638 * 3 2 1 28 28 H 1.09003 * 109.47216 * 29.99790 * 3 2 1 29 29 H 1.07993 * 119.51065 * 359.97438 * 5 4 3 30 30 H 1.08008 * 120.16820 * 179.73137 * 6 5 4 31 31 H 1.07999 * 120.16918 * 0.02863 * 8 7 6 32 32 H 1.08002 * 119.50719 * 179.97438 * 9 8 7 33 33 H 1.08001 * 119.50524 * 180.02562 * 10 9 8 34 34 H 1.07997 * 120.17587 * 180.02562 * 11 10 9 35 35 H 1.07998 * 120.17278 * 0.02562 * 13 4 3 36 36 H 0.97002 * 120.00009 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 3.6108 1.2903 -2.0700 6 6 3.8706 1.6698 -3.3509 7 6 2.9528 2.4858 -4.0341 8 6 3.1864 2.8975 -5.3574 9 6 2.2754 3.6882 -5.9873 10 6 1.1107 4.0969 -5.3401 11 6 0.8509 3.7177 -4.0592 12 6 1.7688 2.9021 -3.3756 13 6 1.5348 2.4894 -2.0528 14 6 2.1389 -1.1672 0.0005 15 8 3.3558 -1.1671 0.0010 16 6 1.4071 -2.4348 0.0005 17 1 0.3299 -2.4364 0.0777 18 6 2.1037 -3.6456 -0.0995 19 7 3.4101 -3.6522 -0.0693 20 14 1.1655 -5.2512 -0.2764 21 1 1.0548 -5.6040 -1.7145 22 1 1.8895 -6.3295 0.4436 23 1 -0.1938 -5.0964 0.3013 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.1499 1.1384 0.5139 28 1 1.6084 2.0285 0.5138 29 1 4.3179 0.6635 -1.5471 30 1 4.7773 1.3453 -3.8398 31 1 4.0842 2.5879 -5.8716 32 1 2.4576 4.0035 -7.0041 33 1 0.4038 4.7241 -5.8629 34 1 -0.0560 4.0418 -3.5705 35 1 0.6368 2.7985 -1.5386 36 1 3.8926 -4.4909 -0.1382 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258661055.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:07 Heat of formation + Delta-G solvation = 6.540085 kcal Electronic energy + Delta-G solvation = -19642.162394 eV Core-core repulsion = 16669.906661 eV Total energy + Delta-G solvation = -2972.255734 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.11143 -37.89315 -36.18258 -33.87004 -32.49641 -32.40168 -30.62442 -29.12300 -27.08409 -25.91621 -24.36979 -23.00393 -21.75014 -21.63517 -19.20466 -17.03903 -16.70578 -16.43354 -15.78636 -15.47843 -14.56390 -14.51624 -14.25764 -14.08186 -13.50626 -13.27931 -13.15276 -12.91354 -12.38584 -12.19472 -11.71004 -11.55338 -11.39250 -11.26099 -11.05984 -10.94428 -10.87061 -10.65227 -10.50222 -10.24774 -10.13028 -9.71578 -8.85705 -8.27103 -7.69322 -7.51293 -7.25609 -6.21641 -4.65287 0.79767 1.29124 2.33219 3.12746 3.19920 3.22577 3.26327 4.08709 4.35258 4.53689 4.77449 4.80920 4.98190 5.08333 5.25953 5.32074 5.43269 5.52559 5.63366 5.76156 5.85547 5.90710 5.98382 5.99807 6.21916 6.28984 6.36586 6.48243 6.53131 6.54530 6.58092 6.64078 6.93195 7.06352 7.07917 7.35822 7.43916 7.60202 8.11642 8.32722 9.01267 9.39625 10.55334 10.74038 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024592 B = 0.004759 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.315293 B = 5882.371073 C = 6041.119947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.642 5.642 3 C 0.158 3.842 4 C -0.074 4.074 5 C -0.078 4.078 6 C -0.121 4.121 7 C -0.053 4.053 8 C -0.105 4.105 9 C -0.128 4.128 10 C -0.128 4.128 11 C -0.104 4.104 12 C -0.053 4.053 13 C -0.109 4.109 14 C 0.558 3.442 15 O -0.575 6.575 16 C -0.544 4.544 17 H 0.072 0.928 18 C 0.089 3.911 19 N -0.766 5.766 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.264 1.264 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.135 0.865 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 12.471 -7.037 14.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.380 5.380 3 C 0.034 3.966 4 C -0.076 4.076 5 C -0.096 4.096 6 C -0.139 4.139 7 C -0.053 4.053 8 C -0.123 4.123 9 C -0.146 4.146 10 C -0.146 4.146 11 C -0.122 4.122 12 C -0.053 4.053 13 C -0.128 4.128 14 C 0.364 3.636 15 O -0.457 6.457 16 C -0.580 4.580 17 H 0.090 0.910 18 C -0.131 4.131 19 N -0.395 5.395 20 Si 0.730 3.270 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.188 1.188 24 H 0.049 0.951 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.153 0.847 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.519 12.338 -7.001 14.616 hybrid contribution -0.639 -0.852 -0.288 1.103 sum -4.158 11.487 -7.289 14.226 Atomic orbital electron populations 1.21412 0.82132 1.01017 0.99649 1.48044 1.05116 1.04817 1.80014 1.20068 0.98629 0.87018 0.90854 1.20361 0.93806 0.94962 0.98481 1.21091 0.97148 0.96771 0.94571 1.21007 0.99097 0.98631 0.95189 1.18104 0.94725 0.98328 0.94164 1.21008 0.99421 0.97991 0.93849 1.20735 0.94831 0.99249 0.99821 1.20732 0.97600 1.01025 0.95247 1.20983 0.98592 0.97712 0.94954 1.18063 0.94490 0.98275 0.94428 1.20825 0.99069 0.99352 0.93529 1.18242 0.87012 0.82168 0.76183 1.90567 1.13932 1.86150 1.55084 1.21013 0.94005 0.89327 1.53665 0.90989 1.25716 0.94605 1.00175 0.92633 1.70020 1.07187 1.27179 1.35078 0.86399 0.80335 0.81464 0.78838 1.19816 1.20435 1.18849 0.95128 0.90914 0.94091 0.89932 0.91888 0.84723 0.85943 0.85998 0.86537 0.86533 0.86003 0.86110 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.89 10.22 59.85 0.61 2.50 16 2 N -0.64 -14.45 2.86 -184.62 -0.53 -14.98 16 3 C 0.16 3.06 5.54 -5.19 -0.03 3.03 16 4 C -0.07 -1.38 5.43 -104.97 -0.57 -1.95 16 5 C -0.08 -1.50 9.59 -39.93 -0.38 -1.89 16 6 C -0.12 -2.07 9.77 -39.49 -0.39 -2.46 16 7 C -0.05 -0.86 5.74 -106.83 -0.61 -1.47 16 8 C -0.10 -1.41 9.77 -39.49 -0.39 -1.80 16 9 C -0.13 -1.53 9.95 -39.93 -0.40 -1.93 16 10 C -0.13 -1.52 9.95 -39.93 -0.40 -1.91 16 11 C -0.10 -1.38 9.77 -39.49 -0.39 -1.76 16 12 C -0.05 -0.83 5.74 -106.83 -0.61 -1.45 16 13 C -0.11 -1.78 9.37 -39.49 -0.37 -2.15 16 14 C 0.56 15.59 7.61 -12.99 -0.10 15.49 16 15 O -0.57 -17.83 14.05 5.20 0.07 -17.76 16 16 C -0.54 -15.18 8.76 -35.63 -0.31 -15.49 16 17 H 0.07 1.85 5.95 -52.49 -0.31 1.54 16 18 C 0.09 2.45 5.49 -17.36 -0.10 2.36 16 19 N -0.77 -22.66 11.85 55.55 0.66 -22.00 16 20 Si 0.90 20.08 29.56 -169.99 -5.03 15.06 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 1.39 6.04 -51.93 -0.31 1.07 16 26 H 0.04 0.61 7.89 -51.93 -0.41 0.20 16 27 H 0.08 1.73 7.36 -51.93 -0.38 1.35 16 28 H 0.06 1.00 7.82 -51.93 -0.41 0.60 16 29 H 0.13 2.89 7.48 -52.49 -0.39 2.50 16 30 H 0.12 1.82 8.06 -52.48 -0.42 1.39 16 31 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 LS Contribution 309.66 15.07 4.67 4.67 Total: -1.00 -33.42 309.66 -8.89 -42.31 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.31 Total: 3.56 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -4.42 Total: -10.86 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.13 Total: -36.97 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.07 Total: -17.76 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.42 -8.89 -42.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258661055.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.852 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds