Wall clock time and date at job start Mon Mar 30 2020 00:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46507 * 119.99859 * 2 1 4 4 C 1.50700 * 109.46751 * 269.99637 * 3 2 1 5 5 C 1.39376 * 119.50276 * 270.29012 * 4 3 2 6 6 C 1.36097 * 120.98188 * 180.27807 * 5 4 3 7 7 C 1.40529 * 119.65776 * 359.71644 * 6 5 4 8 8 C 1.40540 * 121.28571 * 180.02562 * 7 6 5 9 9 C 1.36086 * 119.65722 * 180.02562 * 8 7 6 10 10 C 1.39375 * 120.98568 * 359.95852 * 9 8 7 11 11 C 1.36085 * 120.99300 * 0.02562 * 10 9 8 12 12 C 1.40542 * 119.65728 * 0.02562 * 11 10 9 13 13 C 1.36086 * 119.50513 * 90.00423 * 4 3 2 14 14 C 1.34774 * 120.00043 * 179.97438 * 2 1 3 15 15 O 1.21687 * 119.99706 * 180.02562 * 14 2 1 16 16 C 1.46369 * 119.99931 * 0.02562 * 14 2 1 17 17 H 1.07995 * 120.00286 * 355.23834 * 16 14 2 18 18 C 1.40052 * 120.00236 * 175.24349 * 16 14 2 19 19 N 1.30677 * 119.99810 * 6.27348 * 18 16 14 20 20 Si 1.86798 * 120.00363 * 186.28403 * 18 16 14 21 21 H 1.48495 * 109.47327 * 94.97490 * 20 18 16 22 22 H 1.48500 * 109.47182 * 214.98090 * 20 18 16 23 23 H 1.48502 * 109.47027 * 334.97905 * 20 18 16 24 24 H 1.08998 * 109.46916 * 90.00308 * 1 2 3 25 25 H 1.09000 * 109.46889 * 210.00614 * 1 2 3 26 26 H 1.09002 * 109.47187 * 329.99946 * 1 2 3 27 27 H 1.09004 * 109.46599 * 149.99638 * 3 2 1 28 28 H 1.09003 * 109.47216 * 29.99790 * 3 2 1 29 29 H 1.07993 * 119.51065 * 359.97438 * 5 4 3 30 30 H 1.08008 * 120.16820 * 179.73137 * 6 5 4 31 31 H 1.07999 * 120.16918 * 0.02863 * 8 7 6 32 32 H 1.08002 * 119.50719 * 179.97438 * 9 8 7 33 33 H 1.08001 * 119.50524 * 180.02562 * 10 9 8 34 34 H 1.07997 * 120.17587 * 180.02562 * 11 10 9 35 35 H 1.07998 * 120.17278 * 0.02562 * 13 4 3 36 36 H 0.97002 * 120.00009 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 3.6108 1.2903 -2.0700 6 6 3.8706 1.6698 -3.3509 7 6 2.9528 2.4858 -4.0341 8 6 3.1864 2.8975 -5.3574 9 6 2.2754 3.6882 -5.9873 10 6 1.1107 4.0969 -5.3401 11 6 0.8509 3.7177 -4.0592 12 6 1.7688 2.9021 -3.3756 13 6 1.5348 2.4894 -2.0528 14 6 2.1389 -1.1672 0.0005 15 8 3.3558 -1.1671 0.0010 16 6 1.4071 -2.4348 0.0005 17 1 0.3299 -2.4364 0.0777 18 6 2.1037 -3.6456 -0.0995 19 7 3.4101 -3.6522 -0.0693 20 14 1.1655 -5.2512 -0.2764 21 1 1.0548 -5.6040 -1.7145 22 1 1.8895 -6.3295 0.4436 23 1 -0.1938 -5.0964 0.3013 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.1499 1.1384 0.5139 28 1 1.6084 2.0285 0.5138 29 1 4.3179 0.6635 -1.5471 30 1 4.7773 1.3453 -3.8398 31 1 4.0842 2.5879 -5.8716 32 1 2.4576 4.0035 -7.0041 33 1 0.4038 4.7241 -5.8629 34 1 -0.0560 4.0418 -3.5705 35 1 0.6368 2.7985 -1.5386 36 1 3.8926 -4.4909 -0.1382 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258661055.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:07 Heat of formation + Delta-G solvation = -13.073499 kcal Electronic energy + Delta-G solvation = -19643.012903 eV Core-core repulsion = 16669.906661 eV Total energy + Delta-G solvation = -2973.106242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.30627 -39.66792 -37.56680 -35.65058 -34.58042 -33.64163 -31.92262 -30.31697 -28.78405 -27.65724 -26.01009 -24.19288 -23.07219 -22.80408 -21.06603 -18.42180 -18.22422 -17.78988 -17.61564 -16.93973 -16.34867 -15.89838 -15.67576 -15.51124 -14.86810 -14.55144 -14.36590 -14.17336 -14.10021 -13.52847 -13.36472 -13.16743 -13.07199 -12.88286 -12.70481 -12.51105 -12.15513 -12.05882 -11.99434 -11.86520 -11.66334 -10.92533 -10.87043 -9.81162 -9.41635 -9.09179 -8.76028 -8.28028 -6.82154 -0.34494 0.10021 1.16021 1.38165 1.39282 1.54617 2.05290 2.25167 2.47911 2.97596 3.29783 3.59846 3.69988 3.93358 3.99979 4.10073 4.14125 4.33108 4.39115 4.51293 4.57412 4.60621 4.65601 4.76680 4.92091 4.93793 5.03974 5.05660 5.22037 5.35166 5.38266 5.39422 5.59518 5.68019 5.70424 5.83978 5.96714 6.14733 6.17169 6.40796 6.89104 7.43446 8.49457 8.68789 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024592 B = 0.004759 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.315293 B = 5882.371073 C = 6041.119947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.645 5.645 3 C 0.161 3.839 4 C -0.101 4.101 5 C -0.111 4.111 6 C -0.125 4.125 7 C -0.071 4.071 8 C -0.122 4.122 9 C -0.117 4.117 10 C -0.120 4.120 11 C -0.111 4.111 12 C -0.072 4.072 13 C -0.095 4.095 14 C 0.540 3.460 15 O -0.623 6.623 16 C -0.572 4.572 17 H 0.091 0.909 18 C 0.030 3.970 19 N -0.821 5.821 20 Si 0.992 3.008 21 H -0.267 1.267 22 H -0.272 1.272 23 H -0.246 1.246 24 H 0.036 0.964 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.787 14.078 -9.098 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.380 5.380 3 C 0.038 3.962 4 C -0.103 4.103 5 C -0.130 4.130 6 C -0.142 4.142 7 C -0.071 4.071 8 C -0.140 4.140 9 C -0.135 4.135 10 C -0.138 4.138 11 C -0.128 4.128 12 C -0.072 4.072 13 C -0.113 4.113 14 C 0.346 3.654 15 O -0.509 6.509 16 C -0.608 4.608 17 H 0.109 0.891 18 C -0.185 4.185 19 N -0.450 5.450 20 Si 0.811 3.189 21 H -0.192 1.192 22 H -0.197 1.197 23 H -0.169 1.169 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.122 0.878 29 H 0.111 0.889 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.989 13.997 -9.058 18.078 hybrid contribution 0.401 -1.141 0.206 1.227 sum -6.587 12.857 -8.852 16.942 Atomic orbital electron populations 1.21585 0.79420 1.02754 1.00532 1.47897 1.06918 1.04524 1.78711 1.20143 0.97495 0.86547 0.91997 1.20201 0.94650 0.97312 0.98137 1.20893 0.97827 0.98397 0.95894 1.21156 0.99968 0.98709 0.94411 1.18364 0.94819 0.98434 0.95527 1.21256 1.00945 0.98855 0.92929 1.21222 0.93942 0.97163 1.01145 1.21241 0.97800 1.00010 0.94742 1.21307 0.98906 0.96997 0.95618 1.18394 0.95156 0.99095 0.94525 1.21079 0.98872 0.97555 0.93814 1.18613 0.86745 0.84122 0.75956 1.90527 1.15993 1.87420 1.56973 1.21548 0.95110 0.90075 1.54052 0.89108 1.26946 0.95487 1.04643 0.91415 1.70198 1.09614 1.28629 1.36598 0.85096 0.79239 0.75526 0.79025 1.19196 1.19718 1.16860 0.94518 0.91789 0.89733 0.93338 0.87800 0.88936 0.85026 0.84439 0.83125 0.82826 0.83262 0.83204 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.55 10.22 127.77 1.31 4.85 16 2 N -0.64 -29.66 2.86 -856.24 -2.45 -32.11 16 3 C 0.16 6.47 5.54 85.63 0.47 6.94 16 4 C -0.10 -3.91 5.43 -20.09 -0.11 -4.02 16 5 C -0.11 -4.74 9.59 22.05 0.21 -4.52 16 6 C -0.12 -4.51 9.77 22.33 0.22 -4.30 16 7 C -0.07 -2.27 5.74 -21.30 -0.12 -2.39 16 8 C -0.12 -3.04 9.77 22.33 0.22 -2.82 16 9 C -0.12 -2.29 9.95 22.04 0.22 -2.07 16 10 C -0.12 -2.24 9.95 22.04 0.22 -2.02 16 11 C -0.11 -2.46 9.77 22.33 0.22 -2.24 16 12 C -0.07 -2.14 5.74 -21.30 -0.12 -2.27 16 13 C -0.09 -2.97 9.37 22.33 0.21 -2.76 16 14 C 0.54 31.73 7.61 86.36 0.66 32.39 16 15 O -0.62 -41.70 14.05 -4.31 -0.06 -41.76 16 16 C -0.57 -32.76 8.76 24.83 0.22 -32.54 16 17 H 0.09 4.67 5.95 -2.91 -0.02 4.65 16 18 C 0.03 1.70 5.49 85.30 0.47 2.17 16 19 N -0.82 -50.96 11.85 21.84 0.26 -50.70 16 20 Si 0.99 41.66 29.56 68.60 2.03 43.69 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 23 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 24 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 2.37 6.04 -2.39 -0.01 2.35 16 26 H 0.08 2.25 7.89 -2.39 -0.02 2.23 16 27 H 0.05 2.23 7.36 -2.38 -0.02 2.21 16 28 H 0.10 3.19 7.82 -2.39 -0.02 3.17 16 29 H 0.09 4.59 7.48 -2.91 -0.02 4.57 16 30 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 31 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 32 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 36 H 0.27 15.37 8.29 -92.71 -0.77 14.60 16 Total: -1.00 -79.05 309.66 5.15 -73.91 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 1.08 Total: 22.57 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 4.28 Total: -15.59 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.19 Total: -82.81 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -0.06 Total: -41.76 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -79.05 5.15 -73.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258661055.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.832 kcal (2) G-P(sol) polarization free energy of solvation -79.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds