Wall clock time and date at job start Mon Mar 30 2020 00:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46752 * 2 1 4 4 C 1.35822 * 116.99500 * 179.97438 * 3 2 1 5 5 C 1.38876 * 119.93513 * 359.72734 * 4 3 2 6 6 C 1.37851 * 120.07328 * 179.76478 * 5 4 3 7 7 C 1.39467 * 119.92642 * 0.50629 * 6 5 4 8 8 C 1.48228 * 120.06718 * 179.72032 * 7 6 5 9 9 C 1.39955 * 119.61188 * 0.02959 * 8 7 6 10 10 C 1.38667 * 119.45656 * 179.97438 * 9 8 7 11 11 C 1.38313 * 118.70029 * 359.97438 * 10 9 8 12 12 C 1.40670 * 119.19419 * 0.02562 * 11 10 9 13 13 C 1.41364 * 119.76615 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00057 * 359.97438 * 13 12 11 15 15 C 1.40013 * 120.00098 * 180.02562 * 13 12 11 16 16 N 1.30740 * 120.00245 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99779 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47547 * 89.99796 * 17 15 13 19 19 H 1.48507 * 109.46879 * 209.99890 * 17 15 13 20 20 H 1.48507 * 109.47203 * 329.99434 * 17 15 13 21 21 N 1.32259 * 119.60826 * 179.75047 * 8 7 6 22 22 C 1.39462 * 119.86424 * 359.74865 * 7 6 5 23 23 C 1.37857 * 119.92694 * 359.97438 * 22 7 6 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 26 26 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 27 27 H 1.08993 * 109.46955 * 120.00418 * 2 1 3 28 28 H 1.09000 * 109.47050 * 240.00247 * 2 1 3 29 29 H 1.08007 * 119.96664 * 0.02562 * 5 4 3 30 30 H 1.07995 * 120.04080 * 180.27403 * 6 5 4 31 31 H 1.07993 * 120.26924 * 359.95094 * 9 8 7 32 32 H 1.08002 * 120.64700 * 180.02562 * 10 9 8 33 33 H 1.07997 * 120.40168 * 179.97438 * 11 10 9 34 34 H 0.97005 * 120.00457 * 180.02562 * 16 15 13 35 35 H 1.07995 * 120.03829 * 180.02562 * 22 7 6 36 36 H 1.07997 * 119.96357 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3528 1.5253 0.0005 5 6 4.1975 0.4230 0.0068 6 6 5.5646 0.6002 0.0025 7 6 6.0992 1.8884 0.0025 8 6 7.5687 2.0826 0.0041 9 6 8.4137 0.9669 0.0050 10 6 9.7879 1.1523 0.0059 11 6 10.2839 2.4435 0.0054 12 6 9.3837 3.5244 0.0046 13 6 9.8775 4.8490 0.0035 14 1 10.9425 5.0283 0.0038 15 6 8.9859 5.9285 0.0032 16 7 7.6966 5.7115 0.0033 17 14 9.6384 7.6788 0.0011 18 1 9.8104 8.1414 -1.3995 19 1 8.6757 8.5668 0.7010 20 1 10.9480 7.7197 0.7003 21 7 8.0658 3.3082 -0.0009 22 6 5.2483 2.9934 0.0016 23 6 3.8821 2.8094 0.0001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.7830 -0.5744 0.0108 30 1 6.2210 -0.2574 0.0028 31 1 7.9989 -0.0301 0.0053 32 1 10.4577 0.3051 0.0062 33 1 11.3495 2.6196 0.0066 34 1 7.0788 6.4594 0.0027 35 1 5.6592 3.9921 0.0011 36 1 3.2226 3.6646 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259074142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:07 Heat of formation + Delta-G solvation = 12.391157 kcal Electronic energy + Delta-G solvation = -19207.821887 eV Core-core repulsion = 16235.819875 eV Total energy + Delta-G solvation = -2972.002012 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.78680 -38.34357 -36.80082 -33.67280 -32.10560 -31.04155 -30.62358 -30.11127 -28.02333 -25.60946 -23.87295 -22.75040 -21.90237 -20.68448 -20.08593 -17.99682 -17.43009 -16.01876 -15.99254 -15.34662 -14.78978 -14.77084 -14.03964 -13.67268 -13.38866 -13.29797 -12.97892 -12.85517 -12.58232 -12.50704 -12.25059 -11.62771 -11.54440 -11.22165 -11.16901 -11.00944 -10.76259 -10.59384 -10.49281 -10.26204 -9.90481 -9.41503 -8.54623 -8.45122 -7.97973 -7.62665 -7.01402 -6.44026 -4.54285 1.61857 1.91142 2.81266 3.07422 3.08718 3.11330 3.21003 3.37851 3.93539 4.34062 4.82407 4.85190 4.89766 5.13118 5.25375 5.27346 5.43573 5.49912 5.66813 5.80415 5.91974 5.92709 5.96846 6.08731 6.31547 6.43765 6.54407 6.62276 6.74484 6.76728 6.88692 7.10057 7.27315 7.33493 7.44444 7.57879 7.70944 7.76923 8.02029 8.20793 8.64664 8.89858 10.04029 10.28673 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.023132 B = 0.004663 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.160108 B = 6003.888972 C = 7193.601138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.321 6.321 4 C 0.116 3.884 5 C -0.219 4.219 6 C -0.073 4.073 7 C -0.054 4.054 8 C 0.181 3.819 9 C -0.304 4.304 10 C -0.059 4.059 11 C -0.274 4.274 12 C 0.257 3.743 13 C -0.432 4.432 14 H 0.084 0.916 15 C 0.071 3.929 16 N -0.719 5.719 17 Si 0.908 3.092 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.262 1.262 21 N -0.470 5.470 22 C -0.041 4.041 23 C -0.162 4.162 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.273 0.727 35 H 0.161 0.839 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.617 -7.034 0.006 11.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.071 3.929 5 C -0.238 4.238 6 C -0.092 4.092 7 C -0.055 4.055 8 C 0.036 3.964 9 C -0.327 4.327 10 C -0.083 4.083 11 C -0.297 4.297 12 C 0.132 3.868 13 C -0.463 4.463 14 H 0.102 0.898 15 C -0.154 4.154 16 N -0.340 5.340 17 Si 0.732 3.268 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.186 1.186 21 N -0.183 5.183 22 C -0.059 4.059 23 C -0.181 4.181 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.178 0.822 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.497 -6.022 0.003 12.102 hybrid contribution 1.010 -0.369 -0.003 1.075 sum -9.487 -6.392 0.000 11.439 Atomic orbital electron populations 1.21767 0.93186 1.02494 1.03372 1.22689 0.95429 0.82709 1.01229 1.86011 1.19803 1.28554 1.89157 1.19067 0.81521 0.94399 0.97939 1.20969 0.94159 0.97329 1.11325 1.21044 0.93831 0.96971 0.97375 1.18790 0.92363 0.92413 1.01952 1.19707 0.91109 0.90405 0.95138 1.21199 0.93858 0.97481 1.20140 1.20780 0.94520 0.95994 0.97041 1.21781 0.98981 0.93349 1.15611 1.18514 0.86968 0.92930 0.88401 1.19591 0.94321 0.89238 1.43134 0.89835 1.26022 0.94632 1.01265 0.93436 1.70058 1.02403 1.32555 1.29027 0.86325 0.79835 0.81438 0.79197 1.19443 1.20099 1.18631 1.68739 1.13940 1.18614 1.17001 1.21617 0.90747 1.01330 0.92230 1.20436 0.95463 0.94170 1.08024 0.90689 0.91648 0.91652 0.92293 0.92294 0.86198 0.85747 0.88543 0.88541 0.88305 0.91623 0.82168 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.05 0.60 5.46 37.16 0.20 0.80 16 3 O -0.32 -4.82 10.13 -19.18 -0.19 -5.01 16 4 C 0.12 1.95 6.69 -39.11 -0.26 1.69 16 5 C -0.22 -3.52 9.02 -39.49 -0.36 -3.88 16 6 C -0.07 -1.33 9.41 -39.27 -0.37 -1.70 16 7 C -0.05 -1.17 5.88 -104.88 -0.62 -1.79 16 8 C 0.18 4.45 6.74 -82.93 -0.56 3.89 16 9 C -0.30 -6.90 9.48 -38.78 -0.37 -7.27 16 10 C -0.06 -1.34 10.15 -39.40 -0.40 -1.74 16 11 C -0.27 -6.76 9.83 -38.64 -0.38 -7.14 16 12 C 0.26 7.02 6.55 -85.01 -0.56 6.46 16 13 C -0.43 -11.41 9.14 -37.73 -0.34 -11.76 16 14 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 15 C 0.07 1.78 5.50 -17.35 -0.10 1.69 16 16 N -0.72 -18.45 11.10 55.55 0.62 -17.84 16 17 Si 0.91 18.36 29.56 -169.99 -5.02 13.34 16 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 21 N -0.47 -12.79 6.91 -7.68 -0.05 -12.84 16 22 C -0.04 -0.85 9.56 -39.27 -0.38 -1.23 16 23 C -0.16 -2.96 9.97 -39.48 -0.39 -3.35 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.60 7.64 -51.93 -0.40 0.20 16 28 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 29 H 0.12 1.55 6.28 -52.48 -0.33 1.22 16 30 H 0.12 2.05 6.16 -52.49 -0.32 1.72 16 31 H 0.10 1.91 6.17 -52.49 -0.32 1.58 16 32 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 34 H 0.27 6.34 8.29 -40.82 -0.34 6.00 16 35 H 0.16 3.69 7.17 -52.49 -0.38 3.31 16 36 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 308.49 15.07 4.65 4.65 Total: -1.00 -29.05 308.49 -8.73 -37.78 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.23 Total: 6.11 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: -4.49 Total: -26.19 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 0.56 Total: -30.68 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.19 Total: -5.01 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.34 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.05 -8.73 -37.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259074142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.172 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds