Wall clock time and date at job start Mon Mar 30 2020 00:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46752 * 2 1 4 4 C 1.35822 * 116.99500 * 179.97438 * 3 2 1 5 5 C 1.38876 * 119.93513 * 359.72734 * 4 3 2 6 6 C 1.37851 * 120.07328 * 179.76478 * 5 4 3 7 7 C 1.39467 * 119.92642 * 0.50629 * 6 5 4 8 8 C 1.48228 * 120.06718 * 179.72032 * 7 6 5 9 9 C 1.39955 * 119.61188 * 0.02959 * 8 7 6 10 10 C 1.38667 * 119.45656 * 179.97438 * 9 8 7 11 11 C 1.38313 * 118.70029 * 359.97438 * 10 9 8 12 12 C 1.40670 * 119.19419 * 0.02562 * 11 10 9 13 13 C 1.41364 * 119.76615 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00057 * 359.97438 * 13 12 11 15 15 C 1.40013 * 120.00098 * 180.02562 * 13 12 11 16 16 N 1.30740 * 120.00245 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99779 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47547 * 89.99796 * 17 15 13 19 19 H 1.48507 * 109.46879 * 209.99890 * 17 15 13 20 20 H 1.48507 * 109.47203 * 329.99434 * 17 15 13 21 21 N 1.32259 * 119.60826 * 179.75047 * 8 7 6 22 22 C 1.39462 * 119.86424 * 359.74865 * 7 6 5 23 23 C 1.37857 * 119.92694 * 359.97438 * 22 7 6 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 26 26 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 27 27 H 1.08993 * 109.46955 * 120.00418 * 2 1 3 28 28 H 1.09000 * 109.47050 * 240.00247 * 2 1 3 29 29 H 1.08007 * 119.96664 * 0.02562 * 5 4 3 30 30 H 1.07995 * 120.04080 * 180.27403 * 6 5 4 31 31 H 1.07993 * 120.26924 * 359.95094 * 9 8 7 32 32 H 1.08002 * 120.64700 * 180.02562 * 10 9 8 33 33 H 1.07997 * 120.40168 * 179.97438 * 11 10 9 34 34 H 0.97005 * 120.00457 * 180.02562 * 16 15 13 35 35 H 1.07995 * 120.03829 * 180.02562 * 22 7 6 36 36 H 1.07997 * 119.96357 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3528 1.5253 0.0005 5 6 4.1975 0.4230 0.0068 6 6 5.5646 0.6002 0.0025 7 6 6.0992 1.8884 0.0025 8 6 7.5687 2.0826 0.0041 9 6 8.4137 0.9669 0.0050 10 6 9.7879 1.1523 0.0059 11 6 10.2839 2.4435 0.0054 12 6 9.3837 3.5244 0.0046 13 6 9.8775 4.8490 0.0035 14 1 10.9425 5.0283 0.0038 15 6 8.9859 5.9285 0.0032 16 7 7.6966 5.7115 0.0033 17 14 9.6384 7.6788 0.0011 18 1 9.8104 8.1414 -1.3995 19 1 8.6757 8.5668 0.7010 20 1 10.9480 7.7197 0.7003 21 7 8.0658 3.3082 -0.0009 22 6 5.2483 2.9934 0.0016 23 6 3.8821 2.8094 0.0001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.7830 -0.5744 0.0108 30 1 6.2210 -0.2574 0.0028 31 1 7.9989 -0.0301 0.0053 32 1 10.4577 0.3051 0.0062 33 1 11.3495 2.6196 0.0066 34 1 7.0788 6.4594 0.0027 35 1 5.6592 3.9921 0.0011 36 1 3.2226 3.6646 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259074142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:06 Heat of formation + Delta-G solvation = -2.688431 kcal Electronic energy + Delta-G solvation = -19208.475787 eV Core-core repulsion = 16235.819875 eV Total energy + Delta-G solvation = -2972.655912 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.10968 -40.03433 -38.22282 -35.51302 -33.32864 -32.62826 -32.07140 -31.67235 -29.61904 -27.42453 -24.98345 -24.29951 -23.44684 -22.26105 -21.62883 -19.40772 -19.10299 -17.63638 -16.98678 -16.76468 -16.47315 -16.41724 -15.73046 -15.14161 -14.95949 -14.54211 -14.34048 -14.30161 -14.04840 -13.84622 -13.37233 -13.01726 -12.81267 -12.71808 -12.69776 -12.57696 -12.51785 -12.15216 -11.75516 -11.65457 -11.54010 -11.19668 -10.24123 -9.90748 -9.78542 -9.48821 -8.62499 -8.27951 -6.50017 0.06140 0.48542 1.06179 1.31619 1.40914 1.53657 1.56722 2.23350 2.29276 2.73710 3.07047 3.75839 3.90924 4.01304 4.01495 4.10985 4.18376 4.35676 4.41686 4.49279 4.51267 4.71669 4.76490 4.87565 4.94752 4.98323 4.99053 5.11269 5.21213 5.23021 5.33064 5.37579 5.59009 5.64274 5.82235 5.90831 5.92126 6.21105 6.29371 6.51736 6.76076 6.97511 8.17516 8.46227 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.023132 B = 0.004663 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.160108 B = 6003.888972 C = 7193.601138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.041 3.959 3 O -0.330 6.330 4 C 0.127 3.873 5 C -0.207 4.207 6 C -0.065 4.065 7 C -0.091 4.091 8 C 0.159 3.841 9 C -0.304 4.304 10 C -0.057 4.057 11 C -0.299 4.299 12 C 0.222 3.778 13 C -0.469 4.469 14 H 0.087 0.913 15 C 0.026 3.974 16 N -0.751 5.751 17 Si 0.986 3.014 18 H -0.264 1.264 19 H -0.268 1.268 20 H -0.257 1.257 21 N -0.503 5.503 22 C -0.059 4.059 23 C -0.170 4.170 24 H 0.102 0.898 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.161 0.839 30 H 0.146 0.854 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.278 0.722 35 H 0.129 0.871 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.968 -9.102 0.016 14.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 O -0.245 6.245 4 C 0.082 3.918 5 C -0.225 4.225 6 C -0.084 4.084 7 C -0.092 4.092 8 C 0.016 3.984 9 C -0.326 4.326 10 C -0.081 4.081 11 C -0.322 4.322 12 C 0.096 3.904 13 C -0.501 4.501 14 H 0.105 0.895 15 C -0.196 4.196 16 N -0.373 5.373 17 Si 0.807 3.193 18 H -0.189 1.189 19 H -0.193 1.193 20 H -0.181 1.181 21 N -0.216 5.216 22 C -0.078 4.078 23 C -0.189 4.189 24 H 0.121 0.879 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.179 0.821 30 H 0.163 0.837 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.861 -8.125 0.013 14.377 hybrid contribution 1.236 0.076 -0.008 1.238 sum -10.625 -8.049 0.005 13.330 Atomic orbital electron populations 1.21807 0.91336 1.04236 1.03108 1.23130 0.96991 0.80747 1.02503 1.86031 1.18348 1.31570 1.88516 1.19099 0.82775 0.93944 0.96028 1.21329 0.93062 0.98937 1.09211 1.21233 0.95120 0.95880 0.96152 1.18873 0.90989 0.94193 1.05119 1.20361 0.93158 0.90386 0.94517 1.21617 0.93933 0.98532 1.18567 1.21224 0.95257 0.96348 0.95265 1.21983 0.99323 0.94002 1.16875 1.19028 0.87859 0.94266 0.89255 1.19933 0.94921 0.90139 1.45071 0.89463 1.26925 0.94683 1.05380 0.92566 1.70179 1.03592 1.34020 1.29527 0.85154 0.79231 0.75642 0.79318 1.18883 1.19299 1.18072 1.68722 1.14135 1.20432 1.18343 1.21380 0.92132 1.00097 0.94160 1.20469 0.94416 0.95783 1.08200 0.87916 0.91944 0.91950 0.90927 0.90935 0.82135 0.83672 0.85109 0.84564 0.87275 0.91154 0.85349 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.04 0.73 5.46 71.98 0.39 1.12 16 3 O -0.33 -9.03 10.13 -91.55 -0.93 -9.95 16 4 C 0.13 4.04 6.69 22.58 0.15 4.19 16 5 C -0.21 -5.97 9.02 22.33 0.20 -5.77 16 6 C -0.06 -2.22 9.41 22.47 0.21 -2.01 16 7 C -0.09 -3.97 5.88 -20.03 -0.12 -4.09 16 8 C 0.16 8.03 6.74 42.15 0.28 8.31 16 9 C -0.30 -13.55 9.48 22.79 0.22 -13.33 16 10 C -0.06 -2.52 10.15 22.39 0.23 -2.29 16 11 C -0.30 -15.08 9.83 22.88 0.22 -14.86 16 12 C 0.22 12.67 6.55 40.25 0.26 12.93 16 13 C -0.47 -26.04 9.14 23.47 0.21 -25.82 16 14 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 15 C 0.03 1.36 5.50 85.29 0.47 1.83 16 16 N -0.75 -40.71 11.10 21.83 0.24 -40.47 16 17 Si 0.99 38.86 29.56 68.60 2.03 40.88 16 18 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 19 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 21 N -0.50 -28.74 6.91 -178.22 -1.23 -29.97 16 22 C -0.06 -2.57 9.56 22.47 0.21 -2.36 16 23 C -0.17 -6.23 9.97 22.33 0.22 -6.01 16 24 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 1.13 7.64 -2.39 -0.02 1.12 16 28 H 0.07 1.13 7.67 -2.39 -0.02 1.12 16 29 H 0.16 3.30 6.28 -2.91 -0.02 3.28 16 30 H 0.15 4.26 6.16 -2.91 -0.02 4.24 16 31 H 0.13 4.78 6.17 -2.91 -0.02 4.76 16 32 H 0.14 4.82 8.06 -2.91 -0.02 4.79 16 33 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 34 H 0.28 13.63 8.29 -92.70 -0.77 12.87 16 35 H 0.13 6.41 7.17 -2.91 -0.02 6.39 16 36 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -66.79 308.49 5.12 -61.68 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 1.09 Total: 27.20 kcal Atomic # 6 Polarization: -53.28 SS G_CDS: 3.92 Total: -49.37 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -0.99 Total: -70.44 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.93 Total: -9.95 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.88 kcal Total: -66.79 5.12 -61.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259074142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.990 kcal (2) G-P(sol) polarization free energy of solvation -66.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds