Wall clock time and date at job start Mon Mar 30 2020 01:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38357 * 119.93715 * 2 1 4 4 C 1.38309 * 120.25581 * 180.02562 * 3 2 1 5 5 C 1.38026 * 120.12669 * 359.74696 * 4 3 2 6 6 C 1.50706 * 120.06266 * 180.25837 * 5 4 3 7 7 C 1.39375 * 119.87333 * 0.48837 * 5 4 3 8 8 C 1.48272 * 120.13085 * 179.78977 * 7 5 4 9 9 C 1.39944 * 120.09445 * 173.09425 * 8 7 5 10 10 C 1.38284 * 117.98071 * 179.97438 * 9 8 7 11 11 C 1.39713 * 118.00725 * 359.97438 * 10 9 8 12 12 N 1.38747 * 120.05457 * 180.02562 * 11 10 9 13 13 C 1.36859 * 119.99745 * 0.02562 * 12 11 10 14 14 H 1.08001 * 120.00767 * 0.02562 * 13 12 11 15 15 C 1.38830 * 119.99737 * 179.97438 * 13 12 11 16 16 N 1.31558 * 119.99751 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99947 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47229 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46877 * 120.00177 * 17 15 13 20 20 H 1.48494 * 109.47078 * 240.00474 * 17 15 13 21 21 N 1.32632 * 119.88728 * 0.02562 * 11 10 9 22 22 N 1.28350 * 122.17605 * 359.72383 * 21 11 10 23 23 C 1.37982 * 119.93602 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.46730 * 270.01652 * 1 2 3 25 25 H 1.08996 * 109.47416 * 30.01220 * 1 2 3 26 26 H 1.09003 * 109.47218 * 150.02162 * 1 2 3 27 27 H 1.08001 * 119.86826 * 0.03469 * 3 2 1 28 28 H 1.08003 * 119.93934 * 180.02562 * 4 3 2 29 29 H 1.09007 * 109.46805 * 263.51629 * 6 5 4 30 30 H 1.08998 * 109.47240 * 23.51518 * 6 5 4 31 31 H 1.08999 * 109.47195 * 143.51980 * 6 5 4 32 32 H 1.08004 * 121.00573 * 359.97438 * 9 8 7 33 33 H 1.08006 * 120.99456 * 179.97438 * 10 9 8 34 34 H 0.96996 * 119.99711 * 180.02562 * 12 11 10 35 35 H 0.97002 * 119.99560 * 180.02562 * 16 15 13 36 36 H 1.08002 * 120.06519 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1990 0.0000 4 6 3.5805 1.2067 -0.0005 5 6 4.2799 0.0167 0.0042 6 6 5.7870 0.0268 0.0095 7 6 3.5898 -1.1942 -0.0008 8 6 4.3354 -2.4758 -0.0004 9 6 3.6488 -3.6870 0.1402 10 6 4.3874 -4.8561 0.1340 11 6 5.7732 -4.7558 -0.0127 12 7 6.5553 -5.9017 -0.0251 13 6 5.9694 -7.1316 0.1058 14 1 4.8982 -7.2103 0.2185 15 6 6.7520 -8.2782 0.0928 16 7 8.0568 -8.1824 -0.0449 17 14 5.9522 -9.9569 0.2709 18 1 4.4828 -9.7930 0.4096 19 1 6.2470 -10.7758 -0.9324 20 1 6.4909 -10.6365 1.4763 21 7 6.3397 -3.5633 -0.1400 22 7 5.6550 -2.4777 -0.1392 23 6 2.1956 -1.1957 0.0005 24 1 -0.3633 0.0003 1.0278 25 1 -0.3634 0.8898 -0.5140 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6543 2.1324 0.0006 28 1 4.1144 2.1455 -0.0001 29 1 6.1546 -0.0888 -1.0102 30 1 6.1426 0.9723 0.4190 31 1 6.1537 -0.7959 0.6233 32 1 2.5745 -3.7081 0.2502 33 1 3.9074 -5.8178 0.2395 34 1 7.5174 -5.8311 -0.1267 35 1 8.6036 -8.9836 -0.0544 36 1 1.6556 -2.1311 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259126885.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:35 Heat of formation + Delta-G solvation = 77.349775 kcal Electronic energy + Delta-G solvation = -19147.203727 eV Core-core repulsion = 16210.311283 eV Total energy + Delta-G solvation = -2936.892444 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.04165 -38.79964 -35.98115 -33.74739 -32.68943 -32.37888 -30.64673 -28.95556 -28.52571 -25.46776 -24.54274 -23.47136 -22.98883 -21.19493 -20.18136 -18.15100 -17.04182 -16.30902 -15.84354 -15.22907 -14.92925 -14.70182 -14.27328 -13.82741 -13.74097 -13.62721 -13.25885 -12.85368 -12.46366 -12.33706 -12.17370 -11.97183 -11.73775 -11.52867 -11.30435 -11.20260 -10.90545 -10.72240 -10.64484 -10.58822 -9.71650 -9.51585 -9.24636 -8.53862 -8.44896 -8.15368 -7.19620 -6.92337 -4.09735 1.26770 1.67454 1.94994 2.44836 2.98497 2.98734 3.03323 3.74768 4.02134 4.54270 4.56017 4.95825 4.99796 5.02687 5.09294 5.33694 5.40286 5.49552 5.61573 5.63187 5.64276 5.87268 5.89361 5.98589 6.05873 6.09599 6.28609 6.36006 6.39411 6.62079 6.67061 6.80531 6.83556 6.95488 6.99158 7.16299 7.21674 7.36903 7.50487 8.36727 8.88256 9.08381 9.99148 10.22582 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033539 B = 0.003945 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.660588 B = 7096.782886 C = 7905.971563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.096 4.096 3 C -0.134 4.134 4 C -0.119 4.119 5 C -0.073 4.073 6 C -0.109 4.109 7 C 0.009 3.991 8 C -0.047 4.047 9 C -0.067 4.067 10 C -0.194 4.194 11 C 0.285 3.715 12 N -0.502 5.502 13 C -0.307 4.307 14 H 0.109 0.891 15 C 0.029 3.971 16 N -0.867 5.867 17 Si 0.941 3.059 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.275 1.275 21 N -0.348 5.348 22 N -0.170 5.170 23 C -0.121 4.121 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.136 0.864 34 H 0.409 0.591 35 H 0.283 0.717 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.576 9.992 0.585 14.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.096 4.096 3 C -0.153 4.153 4 C -0.137 4.137 5 C -0.075 4.075 6 C -0.166 4.166 7 C 0.007 3.993 8 C -0.195 4.195 9 C -0.094 4.094 10 C -0.228 4.228 11 C 0.038 3.962 12 N -0.105 5.105 13 C -0.438 4.438 14 H 0.127 0.873 15 C -0.178 4.178 16 N -0.501 5.501 17 Si 0.766 3.234 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.200 1.200 21 N -0.209 5.209 22 N -0.018 5.018 23 C -0.140 4.140 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.245 0.755 35 H 0.093 0.907 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.975 10.200 0.404 13.593 hybrid contribution -1.270 -1.739 0.200 2.162 sum -10.245 8.461 0.604 13.301 Atomic orbital electron populations 1.20732 0.91674 1.02316 1.01891 1.19668 0.95552 0.93045 1.01324 1.20886 0.94139 0.96994 1.03254 1.20921 0.93930 0.97293 1.01556 1.20039 0.96825 0.91752 0.98875 1.21037 0.90350 1.01876 1.03289 1.18211 0.91854 0.90853 0.98419 1.20329 0.92324 0.92179 1.14643 1.21754 0.99862 0.91938 0.95874 1.21457 0.93307 0.99124 1.08924 1.19885 0.89649 0.88765 0.97950 1.40808 1.09143 1.01836 1.58749 1.19913 0.94681 0.81583 1.47642 0.87323 1.25488 0.95411 1.00874 0.96069 1.69700 1.04300 1.31766 1.44368 0.85623 0.79366 0.79966 0.78447 1.18804 1.20053 1.20047 1.72835 1.29644 0.93817 1.24637 1.72799 1.05272 1.18858 1.04891 1.20959 0.93048 0.97448 1.02573 0.91606 0.91961 0.91820 0.86819 0.86483 0.91275 0.93770 0.88358 0.85579 0.84667 0.75452 0.90723 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.10 -1.25 5.87 -104.67 -0.61 -1.86 16 3 C -0.13 -1.70 9.69 -39.51 -0.38 -2.09 16 4 C -0.12 -1.64 9.66 -39.63 -0.38 -2.03 16 5 C -0.07 -1.20 5.91 -104.27 -0.62 -1.81 16 6 C -0.11 -1.75 8.58 36.01 0.31 -1.44 16 7 C 0.01 0.15 5.87 -104.91 -0.62 -0.46 16 8 C -0.05 -0.92 6.73 -82.73 -0.56 -1.48 16 9 C -0.07 -1.25 9.52 -38.93 -0.37 -1.63 16 10 C -0.19 -4.03 9.40 -39.01 -0.37 -4.39 16 11 C 0.29 6.66 7.71 -154.85 -1.19 5.46 16 12 N -0.50 -12.22 5.44 -11.03 -0.06 -12.28 16 13 C -0.31 -7.38 9.55 -15.09 -0.14 -7.52 16 14 H 0.11 2.44 5.69 -52.49 -0.30 2.14 16 15 C 0.03 0.69 5.50 -17.45 -0.10 0.60 16 16 N -0.87 -21.77 13.05 55.49 0.72 -21.05 16 17 Si 0.94 18.20 29.55 -169.99 -5.02 13.18 16 18 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 19 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 21 N -0.35 -8.21 11.54 31.24 0.36 -7.85 16 22 N -0.17 -3.70 7.44 33.38 0.25 -3.46 16 23 C -0.12 -1.79 9.07 -39.23 -0.36 -2.15 16 24 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 26 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 27 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.04 0.59 8.04 -51.93 -0.42 0.18 16 31 H 0.10 1.81 5.67 -51.93 -0.29 1.52 16 32 H 0.13 1.90 6.35 -52.48 -0.33 1.56 16 33 H 0.14 2.61 6.03 -52.48 -0.32 2.29 16 34 H 0.41 10.32 8.01 -40.82 -0.33 10.00 16 35 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 36 H 0.12 1.59 6.29 -52.49 -0.33 1.26 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -26.58 304.39 -8.17 -34.76 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -3.98 Total: 13.61 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -5.03 Total: -21.51 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 1.27 Total: -44.63 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.02 Total: 13.18 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.58 -8.17 -34.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259126885.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.109 kcal (2) G-P(sol) polarization free energy of solvation -26.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds