Wall clock time and date at job start Mon Mar 30 2020 01:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38357 * 119.93715 * 2 1 4 4 C 1.38309 * 120.25581 * 180.02562 * 3 2 1 5 5 C 1.38026 * 120.12669 * 359.74696 * 4 3 2 6 6 C 1.50706 * 120.06266 * 180.25837 * 5 4 3 7 7 C 1.39375 * 119.87333 * 0.48837 * 5 4 3 8 8 C 1.48272 * 120.13085 * 179.78977 * 7 5 4 9 9 C 1.39944 * 120.09445 * 173.09425 * 8 7 5 10 10 C 1.38284 * 117.98071 * 179.97438 * 9 8 7 11 11 C 1.39713 * 118.00725 * 359.97438 * 10 9 8 12 12 N 1.38747 * 120.05457 * 180.02562 * 11 10 9 13 13 C 1.36859 * 119.99745 * 0.02562 * 12 11 10 14 14 H 1.08001 * 120.00767 * 0.02562 * 13 12 11 15 15 C 1.38830 * 119.99737 * 179.97438 * 13 12 11 16 16 N 1.31558 * 119.99751 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99947 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47229 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46877 * 120.00177 * 17 15 13 20 20 H 1.48494 * 109.47078 * 240.00474 * 17 15 13 21 21 N 1.32632 * 119.88728 * 0.02562 * 11 10 9 22 22 N 1.28350 * 122.17605 * 359.72383 * 21 11 10 23 23 C 1.37982 * 119.93602 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.46730 * 270.01652 * 1 2 3 25 25 H 1.08996 * 109.47416 * 30.01220 * 1 2 3 26 26 H 1.09003 * 109.47218 * 150.02162 * 1 2 3 27 27 H 1.08001 * 119.86826 * 0.03469 * 3 2 1 28 28 H 1.08003 * 119.93934 * 180.02562 * 4 3 2 29 29 H 1.09007 * 109.46805 * 263.51629 * 6 5 4 30 30 H 1.08998 * 109.47240 * 23.51518 * 6 5 4 31 31 H 1.08999 * 109.47195 * 143.51980 * 6 5 4 32 32 H 1.08004 * 121.00573 * 359.97438 * 9 8 7 33 33 H 1.08006 * 120.99456 * 179.97438 * 10 9 8 34 34 H 0.96996 * 119.99711 * 180.02562 * 12 11 10 35 35 H 0.97002 * 119.99560 * 180.02562 * 16 15 13 36 36 H 1.08002 * 120.06519 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1990 0.0000 4 6 3.5805 1.2067 -0.0005 5 6 4.2799 0.0167 0.0042 6 6 5.7870 0.0268 0.0095 7 6 3.5898 -1.1942 -0.0008 8 6 4.3354 -2.4758 -0.0004 9 6 3.6488 -3.6870 0.1402 10 6 4.3874 -4.8561 0.1340 11 6 5.7732 -4.7558 -0.0127 12 7 6.5553 -5.9017 -0.0251 13 6 5.9694 -7.1316 0.1058 14 1 4.8982 -7.2103 0.2185 15 6 6.7520 -8.2782 0.0928 16 7 8.0568 -8.1824 -0.0449 17 14 5.9522 -9.9569 0.2709 18 1 4.4828 -9.7930 0.4096 19 1 6.2470 -10.7758 -0.9324 20 1 6.4909 -10.6365 1.4763 21 7 6.3397 -3.5633 -0.1400 22 7 5.6550 -2.4777 -0.1392 23 6 2.1956 -1.1957 0.0005 24 1 -0.3633 0.0003 1.0278 25 1 -0.3634 0.8898 -0.5140 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6543 2.1324 0.0006 28 1 4.1144 2.1455 -0.0001 29 1 6.1546 -0.0888 -1.0102 30 1 6.1426 0.9723 0.4190 31 1 6.1537 -0.7959 0.6233 32 1 2.5745 -3.7081 0.2502 33 1 3.9074 -5.8178 0.2395 34 1 7.5174 -5.8311 -0.1267 35 1 8.6036 -8.9836 -0.0544 36 1 1.6556 -2.1311 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259126885.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:34 Heat of formation + Delta-G solvation = 64.285901 kcal Electronic energy + Delta-G solvation = -19147.770219 eV Core-core repulsion = 16210.311283 eV Total energy + Delta-G solvation = -2937.458936 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.61708 -40.06091 -37.64746 -34.97480 -34.15124 -34.03473 -32.08135 -30.16543 -29.90469 -27.10811 -25.68504 -25.07007 -24.41802 -22.55987 -21.43290 -19.83089 -18.69443 -17.91171 -17.14781 -16.53513 -16.30728 -16.05165 -15.83529 -15.42652 -14.96952 -14.76313 -14.70382 -13.97521 -13.77160 -13.59392 -13.50703 -13.36848 -13.14933 -12.82012 -12.61168 -12.52260 -12.28781 -12.18091 -12.07367 -11.80235 -11.24191 -11.07278 -10.91319 -10.09738 -9.89877 -9.32618 -8.78165 -8.63562 -5.92327 -0.07409 0.29041 0.56831 1.01335 1.41802 1.48885 1.56624 2.16320 2.67665 2.87912 3.00481 3.31604 3.55330 3.90118 3.95765 4.08234 4.18772 4.24502 4.38016 4.40117 4.49315 4.67138 4.78762 4.90797 4.95128 4.97230 5.02238 5.06748 5.16384 5.24777 5.28291 5.33847 5.47506 5.60275 5.69206 5.73649 5.83786 5.95521 6.24102 6.60612 7.16847 7.29976 8.29769 8.54327 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033539 B = 0.003945 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.660588 B = 7096.782886 C = 7905.971563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.097 4.097 3 C -0.122 4.122 4 C -0.122 4.122 5 C -0.091 4.091 6 C -0.104 4.104 7 C -0.031 4.031 8 C -0.030 4.030 9 C -0.059 4.059 10 C -0.200 4.200 11 C 0.279 3.721 12 N -0.531 5.531 13 C -0.327 4.327 14 H 0.120 0.880 15 C -0.020 4.020 16 N -0.915 5.915 17 Si 1.010 2.990 18 H -0.249 1.249 19 H -0.276 1.276 20 H -0.276 1.276 21 N -0.384 5.384 22 N -0.194 5.194 23 C -0.120 4.120 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.141 0.859 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.171 0.829 33 H 0.151 0.849 34 H 0.396 0.604 35 H 0.282 0.718 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.734 12.080 0.838 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.092 4.092 6 C -0.161 4.161 7 C -0.032 4.032 8 C -0.180 4.180 9 C -0.086 4.086 10 C -0.234 4.234 11 C 0.032 3.968 12 N -0.137 5.137 13 C -0.457 4.457 14 H 0.138 0.862 15 C -0.222 4.222 16 N -0.552 5.552 17 Si 0.831 3.169 18 H -0.172 1.172 19 H -0.202 1.202 20 H -0.202 1.202 21 N -0.243 5.243 22 N -0.038 5.038 23 C -0.140 4.140 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.166 0.834 28 H 0.159 0.841 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.188 0.812 33 H 0.168 0.832 34 H 0.230 0.770 35 H 0.092 0.908 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.157 12.365 0.655 18.067 hybrid contribution -0.253 -1.852 0.124 1.874 sum -13.410 10.512 0.779 17.057 Atomic orbital electron populations 1.20806 0.88904 1.03679 1.03110 1.20118 0.97562 0.92359 0.99623 1.21373 0.93799 0.98470 1.00438 1.21215 0.94788 0.97203 1.00754 1.20194 0.96693 0.92670 0.99660 1.20915 0.91042 1.02012 1.02121 1.18330 0.93080 0.89892 1.01947 1.21043 0.91976 0.94233 1.10760 1.22225 1.01918 0.90533 0.93939 1.21734 0.92339 1.00711 1.08569 1.20284 0.90898 0.88644 0.96994 1.40809 1.08489 1.02306 1.62126 1.20256 0.95277 0.81804 1.48398 0.86236 1.26428 0.95777 1.04214 0.95738 1.69815 1.05756 1.32474 1.47170 0.84611 0.79065 0.75241 0.77946 1.17241 1.20169 1.20157 1.72806 1.30974 0.94418 1.26126 1.72859 1.06522 1.18137 1.06290 1.21208 0.91907 0.99209 1.01677 0.90316 0.90175 0.91055 0.83403 0.84097 0.92453 0.91307 0.91198 0.81174 0.83174 0.76984 0.90839 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 71.24 0.71 -0.80 16 2 C -0.10 -2.06 5.87 -19.90 -0.12 -2.18 16 3 C -0.12 -2.51 9.69 22.31 0.22 -2.29 16 4 C -0.12 -2.93 9.66 22.24 0.21 -2.72 16 5 C -0.09 -2.80 5.91 -19.64 -0.12 -2.92 16 6 C -0.10 -3.34 8.58 71.24 0.61 -2.73 16 7 C -0.03 -1.01 5.87 -20.05 -0.12 -1.12 16 8 C -0.03 -1.16 6.73 42.10 0.28 -0.87 16 9 C -0.06 -2.10 9.52 22.69 0.22 -1.89 16 10 C -0.20 -8.21 9.40 22.64 0.21 -8.00 16 11 C 0.28 13.50 7.71 133.22 1.03 14.53 16 12 N -0.53 -27.35 5.44 -188.82 -1.03 -28.37 16 13 C -0.33 -16.29 9.55 84.05 0.80 -15.49 16 14 H 0.12 5.42 5.69 -2.91 -0.02 5.41 16 15 C -0.02 -0.97 5.50 84.88 0.47 -0.50 16 16 N -0.92 -48.52 13.05 21.65 0.28 -48.24 16 17 Si 1.01 38.00 29.55 68.60 2.03 40.03 16 18 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 19 H -0.28 -10.30 7.11 99.48 0.71 -9.59 16 20 H -0.28 -10.29 7.11 99.48 0.71 -9.58 16 21 N -0.38 -18.99 11.54 -55.06 -0.64 -19.63 16 22 N -0.19 -8.68 7.44 -48.31 -0.36 -9.04 16 23 C -0.12 -3.15 9.07 22.50 0.20 -2.94 16 24 H 0.08 0.95 8.14 -2.38 -0.02 0.94 16 25 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 26 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 27 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 28 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 29 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.07 1.79 8.04 -2.39 -0.02 1.77 16 31 H 0.07 2.67 5.67 -2.39 -0.01 2.65 16 32 H 0.17 4.45 6.35 -2.91 -0.02 4.43 16 33 H 0.15 5.64 6.03 -2.91 -0.02 5.63 16 34 H 0.40 21.64 8.01 -92.71 -0.74 20.90 16 35 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 36 H 0.14 2.99 6.29 -2.91 -0.02 2.97 16 Total: -1.00 -61.37 304.39 5.29 -56.08 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: 0.38 Total: 39.09 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 4.62 Total: -29.92 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -1.74 Total: -105.28 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -61.37 5.29 -56.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259126885.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.366 kcal (2) G-P(sol) polarization free energy of solvation -61.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds