Wall clock time and date at job start Mon Mar 30 2020 00:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.47170 * 2 1 4 4 C 1.35841 * 117.00263 * 179.97438 * 3 2 1 5 5 C 1.38855 * 119.94028 * 180.02562 * 4 3 2 6 6 C 1.37873 * 120.06912 * 180.02562 * 5 4 3 7 7 C 1.39415 * 119.93392 * 359.97330 * 6 5 4 8 8 C 1.48300 * 120.06465 * 180.02562 * 7 6 5 9 9 C 1.38945 * 119.61692 * 180.02562 * 8 7 6 10 10 C 1.40824 * 118.76117 * 179.97438 * 9 8 7 11 11 C 1.41531 * 120.98442 * 180.27275 * 10 9 8 12 12 H 1.07994 * 120.00186 * 150.08007 * 11 10 9 13 13 C 1.40048 * 120.00049 * 330.08113 * 11 10 9 14 14 N 1.30740 * 119.99979 * 162.10607 * 13 11 10 15 15 Si 1.86803 * 119.99961 * 342.10131 * 13 11 10 16 16 H 1.48497 * 109.46663 * 95.41079 * 15 13 11 17 17 H 1.48496 * 109.47048 * 215.41444 * 15 13 11 18 18 H 1.48498 * 109.47234 * 335.41417 * 15 13 11 19 19 C 1.41150 * 118.03006 * 0.02562 * 10 9 8 20 20 C 1.37719 * 119.08238 * 359.97438 * 19 10 9 21 21 N 1.31934 * 121.16050 * 359.97438 * 20 19 10 22 22 C 1.39411 * 119.86546 * 0.27703 * 7 6 5 23 23 C 1.37873 * 119.93508 * 359.44882 * 22 7 6 24 24 H 1.09004 * 109.47227 * 59.99878 * 1 2 3 25 25 H 1.08999 * 109.47260 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46708 * 299.99708 * 1 2 3 27 27 H 1.09001 * 109.46708 * 240.00292 * 2 1 3 28 28 H 1.08997 * 109.46934 * 120.00719 * 2 1 3 29 29 H 1.07997 * 119.96555 * 359.97438 * 5 4 3 30 30 H 1.08008 * 120.03147 * 179.97438 * 6 5 4 31 31 H 1.08008 * 120.62158 * 0.02768 * 9 8 7 32 32 H 0.97002 * 119.99909 * 179.97438 * 14 13 11 33 33 H 1.08005 * 120.45713 * 179.97438 * 19 10 9 34 34 H 1.08003 * 119.41741 * 180.02562 * 20 19 10 35 35 H 1.08006 * 120.03138 * 179.69822 * 22 7 6 36 36 H 1.08001 * 119.96896 * 180.25699 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3530 1.5252 0.0005 5 6 3.8824 2.8089 0.0011 6 6 5.2488 2.9927 0.0011 7 6 6.0993 1.8880 0.0011 8 6 7.5695 2.0823 0.0017 9 6 8.4086 0.9748 0.0012 10 6 9.8017 1.1802 0.0012 11 6 10.6995 0.0860 -0.0051 12 1 11.6683 0.1852 -0.4718 13 6 10.3315 -1.1252 0.5939 14 7 10.9780 -2.2229 0.2998 15 14 8.9169 -1.1725 1.8130 16 1 7.6687 -1.5601 1.1080 17 1 9.2133 -2.1651 2.8769 18 1 8.7441 0.1704 2.4231 19 6 10.2763 2.5095 0.0023 20 6 9.3678 3.5446 0.0028 21 7 8.0690 3.3129 0.0018 22 6 5.5649 0.6004 -0.0047 23 6 4.1977 0.4229 0.0010 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.2231 3.6643 0.0007 30 1 5.6599 3.9915 0.0012 31 1 7.9999 -0.0250 -0.0001 32 1 10.7233 -3.0618 0.7150 33 1 11.3372 2.7121 0.0028 34 1 9.7250 4.5638 0.0033 35 1 6.2213 -0.2573 -0.0097 36 1 3.7831 -0.5743 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259355897.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:12 Heat of formation + Delta-G solvation = -12.749394 kcal Electronic energy + Delta-G solvation = -19284.833352 eV Core-core repulsion = 16311.741163 eV Total energy + Delta-G solvation = -2973.092188 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.27482 -40.36453 -38.35666 -35.97691 -33.54150 -33.30737 -32.17426 -31.90992 -29.29481 -27.85938 -25.07131 -24.73373 -23.48526 -22.52487 -21.70171 -19.62135 -19.26417 -17.84057 -17.10154 -17.04672 -16.93880 -16.28604 -16.08454 -15.34492 -15.15305 -14.87798 -14.76042 -14.41903 -14.30981 -14.19080 -13.56764 -13.42500 -13.01964 -12.91068 -12.77794 -12.70305 -12.59091 -12.38169 -11.82651 -11.70047 -11.66026 -11.30334 -10.25006 -10.08595 -10.02161 -9.97774 -9.03361 -8.72186 -6.74820 -0.15764 0.35241 0.71921 0.97244 1.17895 1.34460 1.39843 2.02380 2.21860 2.50586 2.84813 3.46904 3.54660 3.76656 3.89123 4.06604 4.08234 4.21488 4.32479 4.33479 4.39790 4.57504 4.59569 4.69253 4.73314 4.88630 4.95808 4.96953 5.09244 5.10826 5.17652 5.27539 5.31192 5.39791 5.62122 5.73352 5.75989 6.04405 6.21077 6.41483 6.49337 6.64982 7.48725 8.04075 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.005385 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.394522 B = 5198.813099 C = 6341.644379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.040 3.960 3 O -0.323 6.323 4 C 0.132 3.868 5 C -0.156 4.156 6 C -0.047 4.047 7 C -0.096 4.096 8 C 0.174 3.826 9 C -0.286 4.286 10 C 0.094 3.906 11 C -0.475 4.475 12 H 0.068 0.932 13 C 0.059 3.941 14 N -0.830 5.830 15 Si 0.951 3.049 16 H -0.248 1.248 17 H -0.268 1.268 18 H -0.265 1.265 19 C -0.273 4.273 20 C 0.115 3.885 21 N -0.566 5.566 22 C -0.081 4.081 23 C -0.207 4.207 24 H 0.065 0.935 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.154 0.846 30 H 0.143 0.857 31 H 0.110 0.890 32 H 0.299 0.701 33 H 0.121 0.879 34 H 0.171 0.829 35 H 0.118 0.882 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.951 2.285 1.248 18.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.035 4.035 3 O -0.237 6.237 4 C 0.086 3.914 5 C -0.175 4.175 6 C -0.065 4.065 7 C -0.097 4.097 8 C 0.041 3.959 9 C -0.308 4.308 10 C 0.086 3.914 11 C -0.506 4.506 12 H 0.086 0.914 13 C -0.158 4.158 14 N -0.455 5.455 15 Si 0.775 3.225 16 H -0.172 1.172 17 H -0.194 1.194 18 H -0.190 1.190 19 C -0.295 4.295 20 C -0.038 4.038 21 N -0.281 5.281 22 C -0.100 4.100 23 C -0.226 4.226 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.171 0.829 30 H 0.161 0.839 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.140 0.860 34 H 0.188 0.812 35 H 0.136 0.864 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.573 2.860 1.240 18.833 hybrid contribution 1.148 -1.377 0.289 1.816 sum -17.425 1.483 1.529 17.555 Atomic orbital electron populations 1.21797 0.91019 1.04201 1.03362 1.23124 0.97213 0.80822 1.02315 1.86037 1.18103 1.31292 1.88302 1.19154 0.82713 0.94083 0.95466 1.20593 0.94588 0.95615 1.06679 1.21170 0.91789 0.99043 0.94520 1.18740 0.90605 0.94282 1.06034 1.19588 0.92617 0.89126 0.94587 1.21978 0.94036 0.98409 1.16411 1.18098 0.92011 0.93802 0.87478 1.19508 1.02547 0.94770 1.33762 0.91358 1.26702 0.98509 0.93723 0.96913 1.69650 1.39163 1.00489 1.36240 0.85709 0.78887 0.79178 0.78759 1.17243 1.19418 1.18985 1.22215 1.00434 0.92982 1.13876 1.22581 0.88057 0.99394 0.93756 1.67490 1.15735 1.22278 1.22586 1.21189 0.95409 0.96274 0.97100 1.21288 0.92816 0.99423 1.09068 0.91631 0.88246 0.91642 0.91219 0.91255 0.82864 0.83948 0.87208 0.89034 0.86049 0.81240 0.86412 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 71.98 0.74 -1.01 16 2 C 0.04 0.67 5.46 71.98 0.39 1.06 16 3 O -0.32 -7.74 10.13 -91.77 -0.93 -8.67 16 4 C 0.13 3.67 6.69 22.57 0.15 3.82 16 5 C -0.16 -4.43 9.97 22.33 0.22 -4.21 16 6 C -0.05 -1.56 9.56 22.47 0.21 -1.35 16 7 C -0.10 -3.75 5.88 -20.03 -0.12 -3.87 16 8 C 0.17 7.96 6.73 41.85 0.28 8.24 16 9 C -0.29 -14.07 6.63 23.07 0.15 -13.92 16 10 C 0.09 4.86 5.12 -21.12 -0.11 4.76 16 11 C -0.48 -26.29 9.63 23.52 0.23 -26.06 16 12 H 0.07 4.00 8.06 -2.91 -0.02 3.97 16 13 C 0.06 3.12 5.43 85.29 0.46 3.58 16 14 N -0.83 -43.92 13.92 21.84 0.30 -43.61 16 15 Si 0.95 42.19 24.55 68.60 1.68 43.88 16 16 H -0.25 -10.10 6.20 99.48 0.62 -9.49 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 18 H -0.27 -12.60 6.85 99.48 0.68 -11.92 16 19 C -0.27 -12.62 9.90 22.86 0.23 -12.40 16 20 C 0.12 4.81 11.15 84.55 0.94 5.75 16 21 N -0.57 -25.04 9.39 -185.39 -1.74 -26.78 16 22 C -0.08 -2.88 9.41 22.47 0.21 -2.67 16 23 C -0.21 -5.98 9.02 22.33 0.20 -5.78 16 24 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 1.08 7.66 -2.39 -0.02 1.06 16 28 H 0.07 1.08 7.65 -2.39 -0.02 1.06 16 29 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 30 H 0.14 4.65 7.52 -2.91 -0.02 4.63 16 31 H 0.11 5.28 2.97 -2.91 -0.01 5.27 16 32 H 0.30 14.06 8.29 -92.71 -0.77 13.29 16 33 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 34 H 0.17 5.56 8.06 -2.91 -0.02 5.53 16 35 H 0.12 4.38 5.64 -2.91 -0.02 4.36 16 36 H 0.15 3.45 6.28 -2.91 -0.02 3.43 16 Total: -1.00 -61.91 301.67 4.50 -57.41 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.98 Total: 21.85 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 4.20 Total: -44.07 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -1.44 Total: -70.40 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.93 Total: -8.67 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.68 Total: 43.88 kcal Total: -61.91 4.50 -57.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259355897.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.657 kcal (2) G-P(sol) polarization free energy of solvation -61.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds