Wall clock time and date at job start Mon Mar 30 2020 01:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38330 * 119.87176 * 269.72947 * 3 2 1 5 5 C 1.38003 * 120.12405 * 179.72353 * 4 3 2 6 6 C 1.39402 * 119.87205 * 0.57049 * 5 4 3 7 7 C 1.48269 * 120.12715 * 179.72777 * 6 5 4 8 8 C 1.39948 * 120.09078 * 359.69998 * 7 6 5 9 9 C 1.38282 * 117.97711 * 179.78489 * 8 7 6 10 10 C 1.39718 * 118.00941 * 0.48111 * 9 8 7 11 11 N 1.38746 * 120.05630 * 179.77242 * 10 9 8 12 12 C 1.36866 * 120.00159 * 359.97438 * 11 10 9 13 13 H 1.08000 * 119.99887 * 359.97438 * 12 11 10 14 14 C 1.38814 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31567 * 119.99673 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00359 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.46964 * 90.00166 * 16 14 12 18 18 H 1.48500 * 109.47071 * 210.00513 * 16 14 12 19 19 H 1.48505 * 109.46663 * 330.00122 * 16 14 12 20 20 N 1.32630 * 119.88580 * 359.75090 * 10 9 8 21 21 N 1.28347 * 122.17680 * 359.97438 * 20 10 9 22 22 C 1.39407 * 119.74381 * 359.70055 * 6 5 4 23 23 C 1.37997 * 119.87145 * 0.02562 * 22 6 5 24 24 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 29 29 H 1.08005 * 119.94010 * 359.97438 * 4 3 2 30 30 H 1.08002 * 120.06651 * 180.29225 * 5 4 3 31 31 H 1.07995 * 121.00873 * 0.02562 * 8 7 6 32 32 H 1.08005 * 120.99788 * 180.23578 * 9 8 7 33 33 H 0.96991 * 119.99590 * 179.97438 * 11 10 9 34 34 H 0.97000 * 120.00031 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.06109 * 179.97438 * 22 6 5 36 36 H 1.08004 * 119.93454 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2673 2.0686 -1.1995 5 6 2.7219 3.3716 -1.2056 6 6 2.9557 4.0310 0.0001 7 6 3.4498 5.4289 0.0001 8 6 3.6892 6.0886 -1.2107 9 6 4.1452 7.3930 -1.1597 10 6 4.3486 7.9683 0.0972 11 7 4.8098 9.2730 0.1978 12 6 5.0665 9.9974 -0.9347 13 1 4.9104 9.5533 -1.9067 14 6 5.5285 11.3026 -0.8339 15 7 5.7757 11.9987 -1.9226 16 14 5.7992 12.0704 0.8473 17 1 7.1907 11.8067 1.2937 18 1 5.5754 13.5361 0.7639 19 1 4.8465 11.4789 1.8208 20 7 4.0996 7.2653 1.1939 21 7 3.6712 6.0563 1.1482 22 6 2.7224 3.3713 1.2058 23 6 2.2624 2.0703 1.1996 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.0909 1.5549 -2.1331 30 1 2.9006 3.8779 -2.1427 31 1 3.5191 5.5951 -2.1562 32 1 4.3422 7.9492 -2.0644 33 1 4.9504 9.6716 1.0708 34 1 6.0982 12.9108 -1.8522 35 1 2.9021 3.8772 2.1429 36 1 2.0817 1.5580 2.1331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259430889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:24 Heat of formation + Delta-G solvation = 73.194926 kcal Electronic energy + Delta-G solvation = -18711.687081 eV Core-core repulsion = 15774.614470 eV Total energy + Delta-G solvation = -2937.072612 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.05081 -38.90535 -36.14199 -34.35652 -32.59206 -32.18015 -30.76830 -30.37371 -28.24415 -25.31028 -24.11191 -23.54283 -22.08220 -21.75624 -20.43416 -18.71079 -17.08252 -16.64352 -16.28212 -15.37938 -15.05164 -14.80989 -14.23408 -13.97007 -13.75892 -13.52714 -13.28547 -13.26672 -12.98039 -12.63884 -12.38892 -12.15122 -11.95731 -11.65453 -11.26958 -10.99992 -10.93599 -10.76819 -10.70604 -10.33694 -10.24051 -9.54208 -9.31582 -8.70899 -8.64042 -8.49006 -7.31549 -6.82031 -4.10890 1.14124 1.65879 1.85134 2.34104 2.91459 2.92847 2.96606 3.76798 3.95807 4.20977 4.52517 4.77027 4.86080 4.93869 4.95441 5.14265 5.23017 5.29584 5.36105 5.49821 5.56766 5.66456 5.74633 5.78230 5.85366 5.96303 6.00376 6.06506 6.20754 6.30331 6.49959 6.59599 6.76274 6.79037 7.02774 7.05216 7.22108 7.26021 7.54463 8.18801 8.79951 8.84913 9.85006 10.26737 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.055127 B = 0.003285 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.797385 B = 8520.709966 C = 8922.873720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.102 4.102 4 C -0.115 4.115 5 C -0.121 4.121 6 C 0.004 3.996 7 C -0.035 4.035 8 C -0.070 4.070 9 C -0.183 4.183 10 C 0.295 3.705 11 N -0.534 5.534 12 C -0.309 4.309 13 H 0.124 0.876 14 C 0.049 3.951 15 N -0.854 5.854 16 Si 0.884 3.116 17 H -0.264 1.264 18 H -0.270 1.270 19 H -0.261 1.261 20 N -0.345 5.345 21 N -0.180 5.180 22 C -0.101 4.101 23 C -0.117 4.117 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.142 0.858 33 H 0.388 0.612 34 H 0.284 0.716 35 H 0.131 0.869 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 -16.159 1.289 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.102 4.102 4 C -0.133 4.133 5 C -0.140 4.140 6 C 0.002 3.998 7 C -0.184 4.184 8 C -0.097 4.097 9 C -0.217 4.217 10 C 0.049 3.951 11 N -0.141 5.141 12 C -0.439 4.439 13 H 0.141 0.859 14 C -0.159 4.159 15 N -0.487 5.487 16 Si 0.709 3.291 17 H -0.188 1.188 18 H -0.194 1.194 19 H -0.186 1.186 20 N -0.206 5.206 21 N -0.027 5.027 22 C -0.120 4.120 23 C -0.135 4.135 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.160 0.840 33 H 0.224 0.776 34 H 0.094 0.906 35 H 0.149 0.851 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.962 -15.581 2.581 16.881 hybrid contribution 0.315 0.927 -0.695 1.201 sum -5.646 -14.654 1.885 15.817 Atomic orbital electron populations 1.21754 0.95070 1.01268 1.02289 1.20487 0.95922 0.93063 1.02381 1.19820 1.00956 0.96131 0.93327 1.20806 1.00661 0.94663 0.97208 1.21123 1.00782 0.94747 0.97373 1.18321 0.97305 0.90948 0.93225 1.20399 1.11360 0.95546 0.91086 1.21831 0.95591 0.93977 0.98282 1.21576 1.06197 0.95795 0.98121 1.19740 0.96205 0.87588 0.91578 1.40982 1.56209 1.08039 1.08898 1.19513 1.41878 0.95524 0.86961 0.85880 1.25071 0.96221 0.95963 0.98659 1.69661 1.40142 1.11043 1.27893 0.86529 0.79981 0.80071 0.82549 1.18834 1.19432 1.18589 1.72774 1.21656 1.01687 1.24483 1.72535 1.04338 1.01297 1.24505 1.21256 0.98392 0.94089 0.98275 1.20914 1.00482 0.94895 0.97186 0.92558 0.92779 0.92600 0.91383 0.91417 0.86495 0.86037 0.85176 0.84001 0.77592 0.90587 0.85094 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.08 -0.73 6.06 -27.88 -0.17 -0.89 16 3 C -0.10 -1.20 5.14 -104.55 -0.54 -1.74 16 4 C -0.12 -1.40 9.68 -39.63 -0.38 -1.78 16 5 C -0.12 -1.68 9.43 -39.23 -0.37 -2.05 16 6 C 0.00 0.07 5.88 -104.90 -0.62 -0.55 16 7 C -0.03 -0.67 6.81 -82.73 -0.56 -1.23 16 8 C -0.07 -1.27 9.54 -38.93 -0.37 -1.64 16 9 C -0.18 -3.77 9.40 -39.01 -0.37 -4.14 16 10 C 0.30 6.72 7.71 -154.85 -1.19 5.52 16 11 N -0.53 -12.37 5.24 -11.04 -0.06 -12.42 16 12 C -0.31 -7.61 10.03 -15.09 -0.15 -7.76 16 13 H 0.12 3.13 5.92 -52.49 -0.31 2.82 16 14 C 0.05 1.21 5.50 -17.45 -0.10 1.12 16 15 N -0.85 -22.09 13.96 55.49 0.77 -21.32 16 16 Si 0.88 18.33 27.73 -169.99 -4.71 13.61 16 17 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.26 -5.25 6.52 56.52 0.37 -4.88 16 20 N -0.35 -7.96 11.54 31.24 0.36 -7.60 16 21 N -0.18 -3.88 10.61 33.38 0.35 -3.53 16 22 C -0.10 -1.54 9.58 -39.23 -0.38 -1.92 16 23 C -0.12 -1.49 9.68 -39.63 -0.38 -1.88 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.55 8.08 -51.93 -0.42 0.14 16 28 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 30 H 0.12 1.49 6.24 -52.49 -0.33 1.16 16 31 H 0.13 1.90 6.29 -52.49 -0.33 1.57 16 32 H 0.14 2.83 6.03 -52.48 -0.32 2.51 16 33 H 0.39 8.63 5.88 -40.82 -0.24 8.39 16 34 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.13 2.06 7.56 -52.49 -0.40 1.66 16 36 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 307.09 15.07 4.63 4.63 Total: -1.00 -27.11 307.09 -7.91 -35.01 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -4.04 Total: 11.39 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -5.21 Total: -19.77 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 1.43 Total: -44.87 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -4.71 Total: 13.61 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.11 -7.91 -35.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259430889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.209 kcal (2) G-P(sol) polarization free energy of solvation -27.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds