Wall clock time and date at job start Mon Mar 30 2020 01:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38330 * 119.87176 * 269.72947 * 3 2 1 5 5 C 1.38003 * 120.12405 * 179.72353 * 4 3 2 6 6 C 1.39402 * 119.87205 * 0.57049 * 5 4 3 7 7 C 1.48269 * 120.12715 * 179.72777 * 6 5 4 8 8 C 1.39948 * 120.09078 * 359.69998 * 7 6 5 9 9 C 1.38282 * 117.97711 * 179.78489 * 8 7 6 10 10 C 1.39718 * 118.00941 * 0.48111 * 9 8 7 11 11 N 1.38746 * 120.05630 * 179.77242 * 10 9 8 12 12 C 1.36866 * 120.00159 * 359.97438 * 11 10 9 13 13 H 1.08000 * 119.99887 * 359.97438 * 12 11 10 14 14 C 1.38814 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31567 * 119.99673 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00359 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.46964 * 90.00166 * 16 14 12 18 18 H 1.48500 * 109.47071 * 210.00513 * 16 14 12 19 19 H 1.48505 * 109.46663 * 330.00122 * 16 14 12 20 20 N 1.32630 * 119.88580 * 359.75090 * 10 9 8 21 21 N 1.28347 * 122.17680 * 359.97438 * 20 10 9 22 22 C 1.39407 * 119.74381 * 359.70055 * 6 5 4 23 23 C 1.37997 * 119.87145 * 0.02562 * 22 6 5 24 24 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 29 29 H 1.08005 * 119.94010 * 359.97438 * 4 3 2 30 30 H 1.08002 * 120.06651 * 180.29225 * 5 4 3 31 31 H 1.07995 * 121.00873 * 0.02562 * 8 7 6 32 32 H 1.08005 * 120.99788 * 180.23578 * 9 8 7 33 33 H 0.96991 * 119.99590 * 179.97438 * 11 10 9 34 34 H 0.97000 * 120.00031 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.06109 * 179.97438 * 22 6 5 36 36 H 1.08004 * 119.93454 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2673 2.0686 -1.1995 5 6 2.7219 3.3716 -1.2056 6 6 2.9557 4.0310 0.0001 7 6 3.4498 5.4289 0.0001 8 6 3.6892 6.0886 -1.2107 9 6 4.1452 7.3930 -1.1597 10 6 4.3486 7.9683 0.0972 11 7 4.8098 9.2730 0.1978 12 6 5.0665 9.9974 -0.9347 13 1 4.9104 9.5533 -1.9067 14 6 5.5285 11.3026 -0.8339 15 7 5.7757 11.9987 -1.9226 16 14 5.7992 12.0704 0.8473 17 1 7.1907 11.8067 1.2937 18 1 5.5754 13.5361 0.7639 19 1 4.8465 11.4789 1.8208 20 7 4.0996 7.2653 1.1939 21 7 3.6712 6.0563 1.1482 22 6 2.7224 3.3713 1.2058 23 6 2.2624 2.0703 1.1996 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.0909 1.5549 -2.1331 30 1 2.9006 3.8779 -2.1427 31 1 3.5191 5.5951 -2.1562 32 1 4.3422 7.9492 -2.0644 33 1 4.9504 9.6716 1.0708 34 1 6.0982 12.9108 -1.8522 35 1 2.9021 3.8772 2.1429 36 1 2.0817 1.5580 2.1331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259430889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:23 Heat of formation + Delta-G solvation = 59.449524 kcal Electronic energy + Delta-G solvation = -18712.283127 eV Core-core repulsion = 15774.614470 eV Total energy + Delta-G solvation = -2937.668657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.65520 -40.05507 -37.80500 -35.44653 -34.32331 -33.63100 -31.99454 -31.66824 -29.51557 -26.87747 -25.62116 -24.75835 -23.35394 -23.02838 -21.53431 -20.41984 -18.72764 -18.05702 -17.82940 -16.60524 -16.34495 -15.99954 -15.91277 -15.31249 -14.97074 -14.82320 -14.47570 -14.38894 -14.21855 -14.07546 -13.72963 -13.58306 -13.19588 -12.82451 -12.54075 -12.38959 -12.15841 -12.05749 -11.99883 -11.61942 -11.55470 -11.11723 -11.02230 -10.29671 -9.90486 -9.76577 -8.83944 -8.61216 -5.98944 -0.16894 0.19037 0.59860 0.93821 1.27009 1.30332 1.33593 2.08057 2.51896 2.60372 2.96997 3.26638 3.47341 3.84482 3.86083 3.98410 4.09449 4.16409 4.25583 4.39141 4.46055 4.59502 4.65060 4.75928 4.78965 4.88777 5.07009 5.14744 5.16865 5.21477 5.32263 5.34623 5.42514 5.47562 5.63020 5.77417 5.79926 5.83992 6.17812 6.40468 7.03178 7.09756 8.15882 8.51478 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.055127 B = 0.003285 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.797385 B = 8520.709966 C = 8922.873720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.087 4.087 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.037 4.037 7 C -0.010 4.010 8 C -0.059 4.059 9 C -0.192 4.192 10 C 0.293 3.707 11 N -0.555 5.555 12 C -0.319 4.319 13 H 0.103 0.897 14 C 0.005 3.995 15 N -0.904 5.904 16 Si 0.942 3.058 17 H -0.260 1.260 18 H -0.265 1.265 19 H -0.255 1.255 20 N -0.370 5.370 21 N -0.211 5.211 22 C -0.110 4.110 23 C -0.122 4.122 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.149 0.851 30 H 0.140 0.860 31 H 0.175 0.825 32 H 0.145 0.855 33 H 0.389 0.611 34 H 0.285 0.715 35 H 0.116 0.884 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.484 -19.947 1.024 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.088 4.088 4 C -0.135 4.135 5 C -0.133 4.133 6 C -0.039 4.039 7 C -0.161 4.161 8 C -0.086 4.086 9 C -0.226 4.226 10 C 0.047 3.953 11 N -0.167 5.167 12 C -0.448 4.448 13 H 0.121 0.879 14 C -0.199 4.199 15 N -0.540 5.540 16 Si 0.764 3.236 17 H -0.185 1.185 18 H -0.190 1.190 19 H -0.179 1.179 20 N -0.228 5.228 21 N -0.054 5.054 22 C -0.130 4.130 23 C -0.140 4.140 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.167 0.833 30 H 0.158 0.842 31 H 0.192 0.808 32 H 0.163 0.837 33 H 0.225 0.775 34 H 0.095 0.905 35 H 0.134 0.866 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.307 -19.438 2.361 20.900 hybrid contribution 0.496 1.457 -0.636 1.665 sum -6.811 -17.981 1.726 19.305 Atomic orbital electron populations 1.21747 0.94362 1.02364 1.01845 1.20585 0.96365 0.91066 1.03834 1.20287 0.98323 0.97429 0.92772 1.21201 0.99537 0.93993 0.98732 1.21374 0.99570 0.95469 0.96931 1.18372 1.00712 0.89875 0.94947 1.21084 1.07599 0.96707 0.90755 1.22304 0.93562 0.92888 0.99893 1.21807 1.06306 0.96917 0.97585 1.20095 0.95114 0.87629 0.92445 1.40772 1.59282 1.08327 1.08337 1.19349 1.42711 0.96022 0.86735 0.87897 1.25690 0.96170 0.96235 1.01771 1.69748 1.43010 1.11617 1.29675 0.85640 0.79943 0.79229 0.78761 1.18492 1.18975 1.17933 1.72752 1.22571 1.02498 1.25008 1.72525 1.05907 1.01064 1.25888 1.21292 0.98902 0.95282 0.97516 1.21163 0.99993 0.93945 0.98880 0.93271 0.91022 0.92819 0.90303 0.89746 0.83329 0.84206 0.80766 0.83701 0.77517 0.90482 0.86552 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.89 71.98 0.71 -1.06 16 2 C -0.08 -1.06 6.06 29.85 0.18 -0.88 16 3 C -0.09 -1.69 5.14 -19.82 -0.10 -1.79 16 4 C -0.12 -2.29 9.68 22.24 0.22 -2.07 16 5 C -0.11 -2.73 9.43 22.49 0.21 -2.52 16 6 C -0.04 -1.14 5.88 -20.05 -0.12 -1.26 16 7 C -0.01 -0.39 6.81 42.10 0.29 -0.10 16 8 C -0.06 -2.06 9.54 22.69 0.22 -1.84 16 9 C -0.19 -7.91 9.40 22.64 0.21 -7.70 16 10 C 0.29 13.60 7.71 133.22 1.03 14.63 16 11 N -0.55 -26.57 5.24 -188.83 -0.99 -27.56 16 12 C -0.32 -16.39 10.03 84.05 0.84 -15.54 16 13 H 0.10 5.53 5.92 -2.91 -0.02 5.51 16 14 C 0.00 0.24 5.50 84.87 0.47 0.70 16 15 N -0.90 -48.86 13.96 21.65 0.30 -48.56 16 16 Si 0.94 38.94 27.73 68.60 1.90 40.84 16 17 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 18 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.25 -10.11 6.52 99.48 0.65 -9.46 16 20 N -0.37 -17.36 11.54 -55.06 -0.64 -17.99 16 21 N -0.21 -9.13 10.61 -48.31 -0.51 -9.64 16 22 C -0.11 -3.22 9.58 22.49 0.22 -3.00 16 23 C -0.12 -2.76 9.68 22.24 0.22 -2.55 16 24 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 28 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 29 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 30 H 0.14 2.76 6.24 -2.91 -0.02 2.74 16 31 H 0.18 4.40 6.29 -2.91 -0.02 4.38 16 32 H 0.15 5.87 6.03 -2.91 -0.02 5.86 16 33 H 0.39 17.82 5.88 -92.71 -0.54 17.28 16 34 H 0.29 14.26 8.31 -92.71 -0.77 13.49 16 35 H 0.12 3.66 7.56 -2.91 -0.02 3.64 16 36 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -61.15 307.09 5.16 -55.98 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.51 Total: 31.91 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 4.58 Total: -24.98 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -1.83 Total: -103.75 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.90 Total: 40.84 kcal Total: -61.15 5.16 -55.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259430889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.433 kcal (2) G-P(sol) polarization free energy of solvation -61.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds