Wall clock time and date at job start Mon Mar 30 2020 00:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 119.99472 * 2 1 4 4 H 1.08010 * 119.99482 * 203.18795 * 3 2 1 5 5 C 1.38807 * 120.00686 * 23.18535 * 3 2 1 6 6 N 1.31623 * 119.99787 * 13.71232 * 5 3 2 7 7 Si 1.86794 * 120.00317 * 193.70938 * 5 3 2 8 8 H 1.48501 * 109.47358 * 89.99901 * 7 5 3 9 9 H 1.48506 * 109.47335 * 209.99986 * 7 5 3 10 10 H 1.48495 * 109.47152 * 330.00046 * 7 5 3 11 11 C 1.46500 * 120.00006 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.46666 * 90.00361 * 11 2 1 13 13 H 1.08999 * 109.47047 * 60.00376 * 12 11 2 14 14 O 1.42894 * 109.47233 * 299.99909 * 12 11 2 15 15 C 1.53006 * 109.46647 * 179.97438 * 12 11 2 16 16 O 1.42902 * 109.46727 * 184.99751 * 15 12 11 17 17 C 1.35955 * 116.99635 * 179.97438 * 16 15 12 18 18 C 1.38659 * 120.06399 * 0.02562 * 17 16 15 19 19 C 1.38191 * 119.97152 * 179.97438 * 18 17 16 20 20 C 1.38258 * 120.08890 * 0.02562 * 19 18 17 21 21 C 1.38247 * 120.13214 * 359.97438 * 20 19 18 22 22 C 1.38338 * 120.03030 * 359.70528 * 21 20 19 23 23 F 1.35095 * 120.05020 * 180.27519 * 22 21 20 24 24 H 1.08995 * 109.47751 * 275.16252 * 1 2 3 25 25 H 1.09008 * 109.47269 * 35.16564 * 1 2 3 26 26 H 1.09003 * 109.46996 * 155.16104 * 1 2 3 27 27 H 0.96998 * 120.00091 * 180.02562 * 6 5 3 28 28 H 1.08997 * 109.46956 * 330.00230 * 11 2 1 29 29 H 1.08997 * 109.46750 * 210.00052 * 11 2 1 30 30 H 0.96708 * 113.99835 * 299.99984 * 14 12 11 31 31 H 1.08993 * 109.47234 * 304.99873 * 15 12 11 32 32 H 1.08999 * 109.47144 * 65.00331 * 15 12 11 33 33 H 1.08000 * 120.01922 * 359.97438 * 18 17 16 34 34 H 1.07994 * 119.95024 * 179.97438 * 19 18 17 35 35 H 1.08007 * 119.93306 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.98867 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1642 1.2237 -0.3683 5 6 1.5397 2.3395 0.4732 6 7 0.4223 2.2572 1.1640 7 14 2.3045 4.0087 0.1299 8 1 1.7677 4.5462 -1.1461 9 1 1.9751 4.9416 1.2374 10 1 3.7789 3.8656 0.0253 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4418 13 1 3.0417 -0.9515 -1.9559 14 8 1.2040 -1.8820 -2.1154 15 6 3.2181 -3.0357 -1.4412 16 8 3.5579 -3.3899 -2.7833 17 6 4.2462 -4.5489 -2.9602 18 6 4.5867 -5.3287 -1.8653 19 6 5.2859 -6.5067 -2.0473 20 6 5.6470 -6.9088 -3.3199 21 6 5.3096 -6.1345 -4.4143 22 6 4.6040 -4.9576 -4.2387 23 9 4.2693 -4.2034 -5.3084 24 1 -0.3634 0.0925 1.0234 25 1 -0.3634 0.8402 -0.5919 26 1 -0.3633 -0.9326 -0.4317 27 1 -0.0042 3.0634 1.4944 28 1 1.6084 -2.0281 0.5147 29 1 3.1499 -1.1381 0.5143 30 1 0.6268 -2.5447 -1.7116 31 1 4.1288 -2.9287 -0.8519 32 1 2.5935 -3.8161 -1.0065 33 1 4.3056 -5.0156 -0.8706 34 1 5.5512 -7.1135 -1.1943 35 1 6.1938 -7.8298 -3.4593 36 1 5.5925 -6.4510 -5.4074 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264288968.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:21 Heat of formation + Delta-G solvation = -81.898952 kcal Electronic energy + Delta-G solvation = -20205.412257 eV Core-core repulsion = 16798.552294 eV Total energy + Delta-G solvation = -3406.859963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.79445 -40.10964 -38.00879 -36.77172 -34.70624 -31.50647 -30.88812 -30.51740 -29.24120 -26.13959 -25.62414 -23.22918 -22.57772 -21.55494 -20.66679 -18.46182 -17.32067 -16.88431 -16.72149 -16.31551 -15.69981 -15.43306 -15.10570 -14.84267 -14.51693 -14.16215 -14.09439 -13.40894 -13.20298 -12.92950 -12.83406 -12.31748 -11.96600 -11.80684 -11.40652 -11.16745 -11.05701 -10.86460 -10.69820 -10.42404 -10.36367 -10.04930 -9.89393 -9.61326 -9.15193 -8.52978 -8.31052 -6.73874 -5.73000 -3.20683 0.91991 1.08903 3.02090 3.38948 3.39729 3.46139 3.46726 4.11138 4.47620 4.52796 4.62010 4.80605 4.92916 4.99222 5.03839 5.20641 5.24560 5.42031 5.44423 5.72549 5.77842 5.84866 5.87610 5.94156 5.98126 6.16026 6.45748 6.50308 6.63098 6.81513 7.26966 7.42548 7.72083 7.80693 8.15972 8.38408 9.21995 9.84477 10.32796 11.31034 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032865 B = 0.003685 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.775185 B = 7595.776436 C = 7776.942276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.589 5.589 3 C -0.260 4.260 4 H 0.067 0.933 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.129 3.871 12 C 0.085 3.915 13 H 0.104 0.896 14 O -0.542 6.542 15 C 0.027 3.973 16 O -0.295 6.295 17 C 0.105 3.895 18 C -0.187 4.187 19 C -0.090 4.090 20 C -0.138 4.138 21 C -0.118 4.118 22 C 0.063 3.937 23 F -0.132 7.132 24 H 0.028 0.972 25 H 0.039 0.961 26 H 0.002 0.998 27 H 0.253 0.747 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.361 0.639 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.387 -18.997 -5.491 21.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.310 5.310 3 C -0.390 4.390 4 H 0.085 0.915 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.000 4.000 12 C 0.022 3.978 13 H 0.122 0.878 14 O -0.345 6.345 15 C -0.049 4.049 16 O -0.207 6.207 17 C 0.057 3.943 18 C -0.206 4.206 19 C -0.108 4.108 20 C -0.156 4.156 21 C -0.137 4.137 22 C 0.043 3.957 23 F -0.110 7.110 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.021 0.979 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.206 0.794 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.417 -18.170 -5.954 20.891 hybrid contribution 0.179 0.550 0.232 0.624 sum 8.596 -17.620 -5.721 20.423 Atomic orbital electron populations 1.20783 0.82178 0.95878 0.98946 1.43696 1.02010 1.00024 1.85277 1.19179 0.98434 0.85722 1.35656 0.91495 1.25006 0.97912 0.98569 0.97917 1.70078 1.19994 1.27298 1.37592 0.86240 0.78731 0.83989 0.77480 1.21383 1.21730 1.20443 1.21220 0.97318 0.89830 0.91655 1.23126 0.84218 0.92231 0.98226 0.87788 1.86687 1.28665 1.63076 1.56122 1.23949 1.00214 0.99579 0.81204 1.86314 1.68588 1.35165 1.30681 1.19213 0.94218 0.87977 0.92866 1.21250 1.04202 0.96965 0.98175 1.21020 0.96702 0.95530 0.97538 1.20883 1.02417 1.00523 0.91825 1.21014 0.98713 0.93104 1.00846 1.17068 1.04264 0.92906 0.81436 1.91514 1.90825 1.75213 1.53496 0.95329 0.94199 0.97946 0.93709 0.94004 0.92327 0.79380 0.91116 0.91897 0.84390 0.85168 0.85058 0.84279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.13 8.66 59.85 0.52 4.65 16 2 N -0.59 -14.72 2.84 -181.12 -0.51 -15.24 16 3 C -0.26 -7.21 9.65 -15.06 -0.15 -7.35 16 4 H 0.07 1.81 7.87 -52.48 -0.41 1.39 16 5 C 0.00 0.13 5.09 -17.43 -0.09 0.04 16 6 N -0.91 -26.59 10.76 55.49 0.60 -25.99 16 7 Si 0.91 22.14 29.57 -169.99 -5.03 17.11 16 8 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.13 2.48 5.34 -4.04 -0.02 2.46 16 12 C 0.08 1.49 3.52 -26.73 -0.09 1.40 16 13 H 0.10 2.10 8.14 -51.93 -0.42 1.68 16 14 O -0.54 -10.13 12.11 -40.06 -0.49 -10.61 16 15 C 0.03 0.37 4.38 37.16 0.16 0.53 16 16 O -0.29 -4.72 9.97 -24.43 -0.24 -4.96 16 17 C 0.10 1.43 6.69 -39.18 -0.26 1.17 16 18 C -0.19 -2.01 9.04 -39.44 -0.36 -2.36 16 19 C -0.09 -0.78 10.04 -39.59 -0.40 -1.17 16 20 C -0.14 -1.15 10.04 -39.57 -0.40 -1.55 16 21 C -0.12 -1.18 10.02 -39.54 -0.40 -1.57 16 22 C 0.06 0.85 7.31 -39.30 -0.29 0.56 16 23 F -0.13 -2.03 17.11 2.25 0.04 -1.99 16 24 H 0.03 0.76 7.33 -51.93 -0.38 0.38 16 25 H 0.04 1.08 7.38 -51.92 -0.38 0.70 16 26 H 0.00 0.04 7.00 -51.93 -0.36 -0.32 16 27 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 29 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 30 H 0.36 5.30 8.79 45.56 0.40 5.70 16 31 H 0.07 0.86 7.66 -51.93 -0.40 0.46 16 32 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 33 H 0.14 1.26 6.30 -52.49 -0.33 0.93 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 35 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 310.19 15.07 4.67 4.67 Total: -1.00 -32.80 310.19 -6.65 -39.45 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -3.93 Total: 0.75 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -1.77 Total: -3.20 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.08 Total: -41.23 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.73 Total: -15.57 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.80 -6.65 -39.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264288968.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.445 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds