Wall clock time and date at job start Mon Mar 30 2020 00:52:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.36936 * 119.99472 * 2 1
4 4 H 1.08010 * 119.99482 * 203.18795 * 3 2 1
5 5 C 1.38807 * 120.00686 * 23.18535 * 3 2 1
6 6 N 1.31623 * 119.99787 * 13.71232 * 5 3 2
7 7 Si 1.86794 * 120.00317 * 193.70938 * 5 3 2
8 8 H 1.48501 * 109.47358 * 89.99901 * 7 5 3
9 9 H 1.48506 * 109.47335 * 209.99986 * 7 5 3
10 10 H 1.48495 * 109.47152 * 330.00046 * 7 5 3
11 11 C 1.46500 * 120.00006 * 179.97438 * 2 1 3
12 12 C 1.53003 * 109.46666 * 90.00361 * 11 2 1
13 13 H 1.08999 * 109.47047 * 60.00376 * 12 11 2
14 14 O 1.42894 * 109.47233 * 299.99909 * 12 11 2
15 15 C 1.53006 * 109.46647 * 179.97438 * 12 11 2
16 16 O 1.42902 * 109.46727 * 184.99751 * 15 12 11
17 17 C 1.35955 * 116.99635 * 179.97438 * 16 15 12
18 18 C 1.38659 * 120.06399 * 0.02562 * 17 16 15
19 19 C 1.38191 * 119.97152 * 179.97438 * 18 17 16
20 20 C 1.38258 * 120.08890 * 0.02562 * 19 18 17
21 21 C 1.38247 * 120.13214 * 359.97438 * 20 19 18
22 22 C 1.38338 * 120.03030 * 359.70528 * 21 20 19
23 23 F 1.35095 * 120.05020 * 180.27519 * 22 21 20
24 24 H 1.08995 * 109.47751 * 275.16252 * 1 2 3
25 25 H 1.09008 * 109.47269 * 35.16564 * 1 2 3
26 26 H 1.09003 * 109.46996 * 155.16104 * 1 2 3
27 27 H 0.96998 * 120.00091 * 180.02562 * 6 5 3
28 28 H 1.08997 * 109.46956 * 330.00230 * 11 2 1
29 29 H 1.08997 * 109.46750 * 210.00052 * 11 2 1
30 30 H 0.96708 * 113.99835 * 299.99984 * 14 12 11
31 31 H 1.08993 * 109.47234 * 304.99873 * 15 12 11
32 32 H 1.08999 * 109.47144 * 65.00331 * 15 12 11
33 33 H 1.08000 * 120.01922 * 359.97438 * 18 17 16
34 34 H 1.07994 * 119.95024 * 179.97438 * 19 18 17
35 35 H 1.08007 * 119.93306 * 179.97438 * 20 19 18
36 36 H 1.08002 * 119.98867 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1496 1.1860 0.0000
4 1 3.1642 1.2237 -0.3683
5 6 1.5397 2.3395 0.4732
6 7 0.4223 2.2572 1.1640
7 14 2.3045 4.0087 0.1299
8 1 1.7677 4.5462 -1.1461
9 1 1.9751 4.9416 1.2374
10 1 3.7789 3.8656 0.0253
11 6 2.1975 -1.2687 0.0006
12 6 2.4525 -1.7109 -1.4418
13 1 3.0417 -0.9515 -1.9559
14 8 1.2040 -1.8820 -2.1154
15 6 3.2181 -3.0357 -1.4412
16 8 3.5579 -3.3899 -2.7833
17 6 4.2462 -4.5489 -2.9602
18 6 4.5867 -5.3287 -1.8653
19 6 5.2859 -6.5067 -2.0473
20 6 5.6470 -6.9088 -3.3199
21 6 5.3096 -6.1345 -4.4143
22 6 4.6040 -4.9576 -4.2387
23 9 4.2693 -4.2034 -5.3084
24 1 -0.3634 0.0925 1.0234
25 1 -0.3634 0.8402 -0.5919
26 1 -0.3633 -0.9326 -0.4317
27 1 -0.0042 3.0634 1.4944
28 1 1.6084 -2.0281 0.5147
29 1 3.1499 -1.1381 0.5143
30 1 0.6268 -2.5447 -1.7116
31 1 4.1288 -2.9287 -0.8519
32 1 2.5935 -3.8161 -1.0065
33 1 4.3056 -5.0156 -0.8706
34 1 5.5512 -7.1135 -1.1943
35 1 6.1938 -7.8298 -3.4593
36 1 5.5925 -6.4510 -5.4074
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000264288968.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:52:21
Heat of formation + Delta-G solvation = -81.898952 kcal
Electronic energy + Delta-G solvation = -20205.412257 eV
Core-core repulsion = 16798.552294 eV
Total energy + Delta-G solvation = -3406.859963 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 269.121 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-48.79445 -40.10964 -38.00879 -36.77172 -34.70624 -31.50647 -30.88812 -30.51740
-29.24120 -26.13959 -25.62414 -23.22918 -22.57772 -21.55494 -20.66679 -18.46182
-17.32067 -16.88431 -16.72149 -16.31551 -15.69981 -15.43306 -15.10570 -14.84267
-14.51693 -14.16215 -14.09439 -13.40894 -13.20298 -12.92950 -12.83406 -12.31748
-11.96600 -11.80684 -11.40652 -11.16745 -11.05701 -10.86460 -10.69820 -10.42404
-10.36367 -10.04930 -9.89393 -9.61326 -9.15193 -8.52978 -8.31052 -6.73874
-5.73000 -3.20683 0.91991 1.08903 3.02090 3.38948 3.39729 3.46139
3.46726 4.11138 4.47620 4.52796 4.62010 4.80605 4.92916 4.99222
5.03839 5.20641 5.24560 5.42031 5.44423 5.72549 5.77842 5.84866
5.87610 5.94156 5.98126 6.16026 6.45748 6.50308 6.63098 6.81513
7.26966 7.42548 7.72083 7.80693 8.15972 8.38408 9.21995 9.84477
10.32796 11.31034
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.032865 B = 0.003685 C = 0.003600
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 851.775185 B = 7595.776436 C = 7776.942276
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.167 3.833
2 N -0.589 5.589
3 C -0.260 4.260
4 H 0.067 0.933
5 C 0.005 3.995
6 N -0.905 5.905
7 Si 0.906 3.094
8 H -0.287 1.287
9 H -0.291 1.291
10 H -0.279 1.279
11 C 0.129 3.871
12 C 0.085 3.915
13 H 0.104 0.896
14 O -0.542 6.542
15 C 0.027 3.973
16 O -0.295 6.295
17 C 0.105 3.895
18 C -0.187 4.187
19 C -0.090 4.090
20 C -0.138 4.138
21 C -0.118 4.118
22 C 0.063 3.937
23 F -0.132 7.132
24 H 0.028 0.972
25 H 0.039 0.961
26 H 0.002 0.998
27 H 0.253 0.747
28 H 0.042 0.958
29 H 0.058 0.942
30 H 0.361 0.639
31 H 0.071 0.929
32 H 0.063 0.937
33 H 0.138 0.862
34 H 0.130 0.870
35 H 0.132 0.868
36 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.387 -18.997 -5.491 21.479
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 N -0.310 5.310
3 C -0.390 4.390
4 H 0.085 0.915
5 C -0.194 4.194
6 N -0.550 5.550
7 Si 0.736 3.264
8 H -0.214 1.214
9 H -0.217 1.217
10 H -0.204 1.204
11 C 0.000 4.000
12 C 0.022 3.978
13 H 0.122 0.878
14 O -0.345 6.345
15 C -0.049 4.049
16 O -0.207 6.207
17 C 0.057 3.943
18 C -0.206 4.206
19 C -0.108 4.108
20 C -0.156 4.156
21 C -0.137 4.137
22 C 0.043 3.957
23 F -0.110 7.110
24 H 0.047 0.953
25 H 0.058 0.942
26 H 0.021 0.979
27 H 0.063 0.937
28 H 0.060 0.940
29 H 0.077 0.923
30 H 0.206 0.794
31 H 0.089 0.911
32 H 0.081 0.919
33 H 0.156 0.844
34 H 0.148 0.852
35 H 0.149 0.851
36 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges 8.417 -18.170 -5.954 20.891
hybrid contribution 0.179 0.550 0.232 0.624
sum 8.596 -17.620 -5.721 20.423
Atomic orbital electron populations
1.20783 0.82178 0.95878 0.98946 1.43696 1.02010 1.00024 1.85277
1.19179 0.98434 0.85722 1.35656 0.91495 1.25006 0.97912 0.98569
0.97917 1.70078 1.19994 1.27298 1.37592 0.86240 0.78731 0.83989
0.77480 1.21383 1.21730 1.20443 1.21220 0.97318 0.89830 0.91655
1.23126 0.84218 0.92231 0.98226 0.87788 1.86687 1.28665 1.63076
1.56122 1.23949 1.00214 0.99579 0.81204 1.86314 1.68588 1.35165
1.30681 1.19213 0.94218 0.87977 0.92866 1.21250 1.04202 0.96965
0.98175 1.21020 0.96702 0.95530 0.97538 1.20883 1.02417 1.00523
0.91825 1.21014 0.98713 0.93104 1.00846 1.17068 1.04264 0.92906
0.81436 1.91514 1.90825 1.75213 1.53496 0.95329 0.94199 0.97946
0.93709 0.94004 0.92327 0.79380 0.91116 0.91897 0.84390 0.85168
0.85058 0.84279
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.17 4.13 8.66 59.85 0.52 4.65 16
2 N -0.59 -14.72 2.84 -181.12 -0.51 -15.24 16
3 C -0.26 -7.21 9.65 -15.06 -0.15 -7.35 16
4 H 0.07 1.81 7.87 -52.48 -0.41 1.39 16
5 C 0.00 0.13 5.09 -17.43 -0.09 0.04 16
6 N -0.91 -26.59 10.76 55.49 0.60 -25.99 16
7 Si 0.91 22.14 29.57 -169.99 -5.03 17.11 16
8 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16
9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
11 C 0.13 2.48 5.34 -4.04 -0.02 2.46 16
12 C 0.08 1.49 3.52 -26.73 -0.09 1.40 16
13 H 0.10 2.10 8.14 -51.93 -0.42 1.68 16
14 O -0.54 -10.13 12.11 -40.06 -0.49 -10.61 16
15 C 0.03 0.37 4.38 37.16 0.16 0.53 16
16 O -0.29 -4.72 9.97 -24.43 -0.24 -4.96 16
17 C 0.10 1.43 6.69 -39.18 -0.26 1.17 16
18 C -0.19 -2.01 9.04 -39.44 -0.36 -2.36 16
19 C -0.09 -0.78 10.04 -39.59 -0.40 -1.17 16
20 C -0.14 -1.15 10.04 -39.57 -0.40 -1.55 16
21 C -0.12 -1.18 10.02 -39.54 -0.40 -1.57 16
22 C 0.06 0.85 7.31 -39.30 -0.29 0.56 16
23 F -0.13 -2.03 17.11 2.25 0.04 -1.99 16
24 H 0.03 0.76 7.33 -51.93 -0.38 0.38 16
25 H 0.04 1.08 7.38 -51.92 -0.38 0.70 16
26 H 0.00 0.04 7.00 -51.93 -0.36 -0.32 16
27 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16
28 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16
29 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16
30 H 0.36 5.30 8.79 45.56 0.40 5.70 16
31 H 0.07 0.86 7.66 -51.93 -0.40 0.46 16
32 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16
33 H 0.14 1.26 6.30 -52.49 -0.33 0.93 16
34 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16
35 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16
36 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16
LS Contribution 310.19 15.07 4.67 4.67
Total: -1.00 -32.80 310.19 -6.65 -39.45
By element:
Atomic # 1 Polarization: 4.68 SS G_CDS: -3.93 Total: 0.75 kcal
Atomic # 6 Polarization: -1.43 SS G_CDS: -1.77 Total: -3.20 kcal
Atomic # 7 Polarization: -41.31 SS G_CDS: 0.08 Total: -41.23 kcal
Atomic # 8 Polarization: -14.84 SS G_CDS: -0.73 Total: -15.57 kcal
Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal
Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal
Total LS contribution 4.67 Total: 4.67 kcal
Total: -32.80 -6.65 -39.45 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000264288968.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.445 kcal
(2) G-P(sol) polarization free energy of solvation -32.800 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.244 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.899 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds