Wall clock time and date at job start Mon Mar 30 2020 00:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 119.99472 * 2 1 4 4 H 1.08010 * 119.99482 * 203.18795 * 3 2 1 5 5 C 1.38807 * 120.00686 * 23.18535 * 3 2 1 6 6 N 1.31623 * 119.99787 * 13.71232 * 5 3 2 7 7 Si 1.86794 * 120.00317 * 193.70938 * 5 3 2 8 8 H 1.48501 * 109.47358 * 89.99901 * 7 5 3 9 9 H 1.48506 * 109.47335 * 209.99986 * 7 5 3 10 10 H 1.48495 * 109.47152 * 330.00046 * 7 5 3 11 11 C 1.46500 * 120.00006 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.46666 * 90.00361 * 11 2 1 13 13 H 1.08999 * 109.47047 * 60.00376 * 12 11 2 14 14 O 1.42894 * 109.47233 * 299.99909 * 12 11 2 15 15 C 1.53006 * 109.46647 * 179.97438 * 12 11 2 16 16 O 1.42902 * 109.46727 * 184.99751 * 15 12 11 17 17 C 1.35955 * 116.99635 * 179.97438 * 16 15 12 18 18 C 1.38659 * 120.06399 * 0.02562 * 17 16 15 19 19 C 1.38191 * 119.97152 * 179.97438 * 18 17 16 20 20 C 1.38258 * 120.08890 * 0.02562 * 19 18 17 21 21 C 1.38247 * 120.13214 * 359.97438 * 20 19 18 22 22 C 1.38338 * 120.03030 * 359.70528 * 21 20 19 23 23 F 1.35095 * 120.05020 * 180.27519 * 22 21 20 24 24 H 1.08995 * 109.47751 * 275.16252 * 1 2 3 25 25 H 1.09008 * 109.47269 * 35.16564 * 1 2 3 26 26 H 1.09003 * 109.46996 * 155.16104 * 1 2 3 27 27 H 0.96998 * 120.00091 * 180.02562 * 6 5 3 28 28 H 1.08997 * 109.46956 * 330.00230 * 11 2 1 29 29 H 1.08997 * 109.46750 * 210.00052 * 11 2 1 30 30 H 0.96708 * 113.99835 * 299.99984 * 14 12 11 31 31 H 1.08993 * 109.47234 * 304.99873 * 15 12 11 32 32 H 1.08999 * 109.47144 * 65.00331 * 15 12 11 33 33 H 1.08000 * 120.01922 * 359.97438 * 18 17 16 34 34 H 1.07994 * 119.95024 * 179.97438 * 19 18 17 35 35 H 1.08007 * 119.93306 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.98867 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1642 1.2237 -0.3683 5 6 1.5397 2.3395 0.4732 6 7 0.4223 2.2572 1.1640 7 14 2.3045 4.0087 0.1299 8 1 1.7677 4.5462 -1.1461 9 1 1.9751 4.9416 1.2374 10 1 3.7789 3.8656 0.0253 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4418 13 1 3.0417 -0.9515 -1.9559 14 8 1.2040 -1.8820 -2.1154 15 6 3.2181 -3.0357 -1.4412 16 8 3.5579 -3.3899 -2.7833 17 6 4.2462 -4.5489 -2.9602 18 6 4.5867 -5.3287 -1.8653 19 6 5.2859 -6.5067 -2.0473 20 6 5.6470 -6.9088 -3.3199 21 6 5.3096 -6.1345 -4.4143 22 6 4.6040 -4.9576 -4.2387 23 9 4.2693 -4.2034 -5.3084 24 1 -0.3634 0.0925 1.0234 25 1 -0.3634 0.8402 -0.5919 26 1 -0.3633 -0.9326 -0.4317 27 1 -0.0042 3.0634 1.4944 28 1 1.6084 -2.0281 0.5147 29 1 3.1499 -1.1381 0.5143 30 1 0.6268 -2.5447 -1.7116 31 1 4.1288 -2.9287 -0.8519 32 1 2.5935 -3.8161 -1.0065 33 1 4.3056 -5.0156 -0.8706 34 1 5.5512 -7.1135 -1.1943 35 1 6.1938 -7.8298 -3.4593 36 1 5.5925 -6.4510 -5.4074 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264288968.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:21 Heat of formation + Delta-G solvation = -104.519816 kcal Electronic energy + Delta-G solvation = -20206.393171 eV Core-core repulsion = 16798.552294 eV Total energy + Delta-G solvation = -3407.840877 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.82416 -41.06605 -39.18212 -38.02572 -36.50248 -33.36077 -31.83574 -31.60978 -30.40562 -27.94721 -27.31270 -24.41992 -23.47759 -22.88452 -22.24311 -19.42859 -18.86039 -18.21082 -17.73198 -17.51283 -17.03752 -16.76213 -16.56743 -15.85413 -15.63570 -15.54668 -15.31951 -15.16615 -14.65910 -14.34352 -13.80226 -13.69351 -13.20055 -13.04433 -12.83686 -12.67737 -12.55764 -12.26612 -12.23569 -12.01191 -11.99128 -11.89498 -11.73035 -11.14769 -10.59968 -9.92868 -9.20051 -8.75584 -7.84142 -5.33757 0.14268 0.29330 1.43670 1.46890 1.54239 2.01727 2.49836 2.62983 3.25028 3.29390 3.52455 3.60133 3.80631 3.89873 4.00260 4.13135 4.21141 4.33949 4.37966 4.41499 4.45976 4.63503 4.89432 4.93842 5.01460 5.11977 5.15740 5.28000 5.37122 5.44286 5.60599 5.70801 5.74461 6.29652 6.34253 6.92858 7.13432 7.85324 8.27735 9.17688 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032865 B = 0.003685 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.775185 B = 7595.776436 C = 7776.942276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.609 5.609 3 C -0.268 4.268 4 H 0.068 0.932 5 C -0.051 4.051 6 N -0.936 5.936 7 Si 0.966 3.034 8 H -0.291 1.291 9 H -0.291 1.291 10 H -0.267 1.267 11 C 0.128 3.872 12 C 0.096 3.904 13 H 0.068 0.932 14 O -0.566 6.566 15 C 0.038 3.962 16 O -0.330 6.330 17 C 0.074 3.926 18 C -0.189 4.189 19 C -0.082 4.082 20 C -0.127 4.127 21 C -0.116 4.116 22 C 0.023 3.977 23 F -0.156 7.156 24 H 0.006 0.994 25 H 0.003 0.997 26 H 0.038 0.962 27 H 0.248 0.752 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.378 0.622 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.154 0.846 34 H 0.166 0.834 35 H 0.169 0.831 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.091 -21.779 -5.020 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.332 5.332 3 C -0.398 4.398 4 H 0.086 0.914 5 C -0.247 4.247 6 N -0.582 5.582 7 Si 0.794 3.206 8 H -0.218 1.218 9 H -0.217 1.217 10 H -0.191 1.191 11 C 0.001 3.999 12 C 0.034 3.966 13 H 0.087 0.913 14 O -0.372 6.372 15 C -0.038 4.038 16 O -0.244 6.244 17 C 0.028 3.972 18 C -0.208 4.208 19 C -0.100 4.100 20 C -0.145 4.145 21 C -0.135 4.135 22 C 0.003 3.997 23 F -0.135 7.135 24 H 0.024 0.976 25 H 0.022 0.978 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.227 0.773 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.172 0.828 34 H 0.184 0.816 35 H 0.186 0.814 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.151 -21.005 -5.490 23.966 hybrid contribution -0.285 1.223 0.048 1.256 sum 9.865 -19.782 -5.441 22.766 Atomic orbital electron populations 1.20508 0.82581 0.96097 0.97107 1.43926 1.02213 1.01368 1.85651 1.19509 0.98583 0.87183 1.34513 0.91446 1.25752 0.98715 1.01796 0.98406 1.70223 1.21349 1.27644 1.38984 0.85288 0.78539 0.80005 0.76761 1.21829 1.21745 1.19134 1.21420 0.97450 0.88124 0.92924 1.22678 0.84151 0.93765 0.96026 0.91343 1.86639 1.29527 1.64137 1.56902 1.23718 1.00944 0.97967 0.81142 1.86213 1.69811 1.36890 1.31458 1.19503 0.95677 0.88049 0.93983 1.21520 1.04091 0.97282 0.97877 1.21503 0.94874 0.94693 0.98955 1.21381 1.01042 1.01046 0.91047 1.21351 0.97578 0.91871 1.02705 1.17640 1.06543 0.94418 0.81050 1.91440 1.91375 1.76098 1.54559 0.97606 0.97822 0.94357 0.94240 0.91066 0.91723 0.77346 0.89349 0.89056 0.82832 0.81643 0.81372 0.82354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.11 8.66 127.77 1.11 10.22 16 2 N -0.61 -30.52 2.84 -726.93 -2.07 -32.59 16 3 C -0.27 -14.96 9.65 84.03 0.81 -14.15 16 4 H 0.07 3.67 7.87 -2.91 -0.02 3.65 16 5 C -0.05 -2.94 5.09 84.86 0.43 -2.51 16 6 N -0.94 -56.24 10.76 21.65 0.23 -56.01 16 7 Si 0.97 46.20 29.57 68.60 2.03 48.23 16 8 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 9 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 C 0.13 4.75 5.34 86.38 0.46 5.22 16 12 C 0.10 3.33 3.52 30.60 0.11 3.44 16 13 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 14 O -0.57 -20.83 12.11 -144.36 -1.75 -22.58 16 15 C 0.04 0.98 4.38 71.98 0.32 1.29 16 16 O -0.33 -10.50 9.97 -88.42 -0.88 -11.38 16 17 C 0.07 1.97 6.69 22.53 0.15 2.12 16 18 C -0.19 -3.51 9.04 22.36 0.20 -3.30 16 19 C -0.08 -1.07 10.04 22.26 0.22 -0.84 16 20 C -0.13 -1.59 10.04 22.28 0.22 -1.36 16 21 C -0.12 -2.08 10.02 22.30 0.22 -1.85 16 22 C 0.02 0.61 7.31 22.45 0.16 0.78 16 23 F -0.16 -5.01 17.11 44.97 0.77 -4.24 16 24 H 0.01 0.31 7.33 -2.39 -0.02 0.29 16 25 H 0.00 0.17 7.38 -2.38 -0.02 0.15 16 26 H 0.04 1.59 7.00 -2.39 -0.02 1.58 16 27 H 0.25 14.50 8.31 -92.71 -0.77 13.72 16 28 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 29 H 0.06 2.32 8.04 -2.39 -0.02 2.30 16 30 H 0.38 10.50 8.79 -74.05 -0.65 9.85 16 31 H 0.09 1.94 7.66 -2.39 -0.02 1.92 16 32 H 0.09 1.82 7.66 -2.39 -0.02 1.81 16 33 H 0.15 2.25 6.30 -2.91 -0.02 2.23 16 34 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 35 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 36 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -74.08 310.19 3.20 -70.88 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 0.44 Total: 8.64 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 4.42 Total: -0.96 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -1.83 Total: -88.59 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -2.63 Total: -33.96 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.77 Total: -4.24 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -74.08 3.20 -70.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264288968.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.636 kcal (2) G-P(sol) polarization free energy of solvation -74.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds