Wall clock time and date at job start Mon Mar 30 2020 00:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36928 * 120.00164 * 2 1 4 4 H 1.08001 * 120.00344 * 321.91263 * 3 2 1 5 5 C 1.38817 * 119.99999 * 141.92187 * 3 2 1 6 6 N 1.31616 * 120.00167 * 157.18997 * 5 3 2 7 7 Si 1.86800 * 119.99861 * 337.18453 * 5 3 2 8 8 H 1.48498 * 109.47053 * 95.67695 * 7 5 3 9 9 H 1.48501 * 109.47152 * 215.67779 * 7 5 3 10 10 H 1.48500 * 109.46920 * 335.67881 * 7 5 3 11 11 C 1.46505 * 119.99548 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46791 * 90.00236 * 11 2 1 13 13 H 1.09000 * 109.47115 * 304.99368 * 12 11 2 14 14 O 1.42901 * 109.47350 * 64.99947 * 12 11 2 15 15 C 1.53005 * 109.46827 * 185.00099 * 12 11 2 16 16 O 1.42895 * 109.46846 * 175.00004 * 15 12 11 17 17 C 1.35966 * 116.99766 * 179.97438 * 16 15 12 18 18 C 1.38655 * 120.06251 * 0.02562 * 17 16 15 19 19 C 1.38177 * 119.97200 * 179.97438 * 18 17 16 20 20 C 1.38264 * 120.09327 * 0.02562 * 19 18 17 21 21 C 1.38256 * 120.12600 * 0.02562 * 20 19 18 22 22 C 1.38339 * 120.02969 * 359.70315 * 21 20 19 23 23 F 1.35100 * 120.04991 * 180.27755 * 22 21 20 24 24 H 1.09000 * 109.47629 * 265.68984 * 1 2 3 25 25 H 1.09000 * 109.46869 * 25.68992 * 1 2 3 26 26 H 1.08999 * 109.47273 * 145.68846 * 1 2 3 27 27 H 0.96995 * 119.99946 * 179.97438 * 6 5 3 28 28 H 1.09003 * 109.47315 * 329.99951 * 11 2 1 29 29 H 1.09001 * 109.46877 * 210.00146 * 11 2 1 30 30 H 0.96701 * 113.99642 * 59.99869 * 14 12 11 31 31 H 1.09007 * 109.46928 * 294.99490 * 15 12 11 32 32 H 1.08994 * 109.47403 * 54.99722 * 15 12 11 33 33 H 1.08003 * 120.01697 * 359.97438 * 18 17 16 34 34 H 1.07997 * 119.95751 * 179.97438 * 19 18 17 35 35 H 1.08003 * 119.93845 * 179.97438 * 20 19 18 36 36 H 1.07995 * 119.98686 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 1.7822 2.0216 -0.5769 5 6 3.3163 1.3137 0.7414 6 7 4.2022 2.2328 0.4211 7 14 3.6286 0.1814 2.1939 8 1 4.4685 -0.9630 1.7577 9 1 4.3324 0.9322 3.2645 10 1 2.3333 -0.3253 2.7141 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4418 13 1 1.5061 -1.7558 -1.9808 14 8 3.3209 -0.7735 -2.0811 15 6 3.1058 -3.0946 -1.4430 16 8 3.2377 -3.5578 -2.7883 17 6 3.8044 -4.7807 -2.9673 18 6 4.2239 -5.5190 -1.8712 19 6 4.7991 -6.7618 -2.0552 20 6 4.9575 -7.2704 -3.3311 21 6 4.5416 -6.5371 -4.4269 22 6 3.9599 -5.2947 -4.2484 23 9 3.5482 -4.5803 -5.3186 24 1 -0.3634 -0.0772 1.0247 25 1 -0.3633 0.9261 -0.4455 26 1 -0.3634 -0.8488 -0.5793 27 1 5.0171 2.3224 0.9394 28 1 1.6083 -2.0282 0.5148 29 1 3.1498 -1.1383 0.5144 30 1 4.1836 -0.6820 -1.6539 31 1 4.0917 -3.0312 -0.9823 32 1 2.4850 -3.7901 -0.8784 33 1 4.1012 -5.1228 -0.8739 34 1 5.1262 -7.3364 -1.2013 35 1 5.4078 -8.2419 -3.4721 36 1 4.6660 -6.9367 -5.4225 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264288973.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:23 Heat of formation + Delta-G solvation = -75.394835 kcal Electronic energy + Delta-G solvation = -20594.474078 eV Core-core repulsion = 17187.896155 eV Total energy + Delta-G solvation = -3406.577923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.76297 -40.07400 -37.97882 -36.79265 -34.68395 -31.68799 -30.88221 -30.64717 -29.40827 -26.63438 -25.68723 -23.15964 -22.53256 -21.44112 -20.84285 -18.49307 -17.41624 -16.80925 -16.61140 -16.46670 -15.71233 -15.35333 -15.08891 -15.04811 -14.48511 -14.30697 -13.88843 -13.64619 -13.26134 -12.83782 -12.74116 -12.44915 -12.28518 -11.98233 -11.85916 -11.41161 -11.37294 -11.00032 -10.85987 -10.55988 -10.42736 -10.03991 -9.64717 -9.40734 -9.12176 -8.56244 -8.27773 -6.85522 -6.00755 -3.40935 0.95061 1.11995 3.04314 3.17378 3.39832 3.42031 3.43951 4.13994 4.45315 4.53981 4.64311 4.82841 4.93587 4.98065 5.03318 5.20513 5.26922 5.32724 5.38951 5.56578 5.75996 5.82124 5.86617 5.91792 6.01040 6.18747 6.19057 6.22189 6.49223 6.55213 6.65240 6.68518 7.29807 8.00635 8.36465 8.45019 8.93170 9.66985 10.06143 11.14909 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026521 B = 0.004718 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.516340 B = 5933.579377 C = 6241.077480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.601 5.601 3 C -0.254 4.254 4 H 0.079 0.921 5 C 0.035 3.965 6 N -0.895 5.895 7 Si 0.870 3.130 8 H -0.289 1.289 9 H -0.299 1.299 10 H -0.271 1.271 11 C 0.111 3.889 12 C 0.094 3.906 13 H 0.098 0.902 14 O -0.529 6.529 15 C 0.022 3.978 16 O -0.293 6.293 17 C 0.105 3.895 18 C -0.188 4.188 19 C -0.090 4.090 20 C -0.138 4.138 21 C -0.118 4.118 22 C 0.064 3.936 23 F -0.132 7.132 24 H 0.009 0.991 25 H 0.048 0.952 26 H 0.027 0.973 27 H 0.262 0.738 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.370 0.630 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.613 -19.530 -4.075 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.324 5.324 3 C -0.383 4.383 4 H 0.096 0.904 5 C -0.166 4.166 6 N -0.537 5.537 7 Si 0.700 3.300 8 H -0.218 1.218 9 H -0.227 1.227 10 H -0.195 1.195 11 C -0.016 4.016 12 C 0.031 3.969 13 H 0.116 0.884 14 O -0.333 6.333 15 C -0.054 4.054 16 O -0.205 6.205 17 C 0.057 3.943 18 C -0.206 4.206 19 C -0.108 4.108 20 C -0.156 4.156 21 C -0.137 4.137 22 C 0.044 3.956 23 F -0.110 7.110 24 H 0.027 0.973 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.216 0.784 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.113 -19.144 -4.602 19.689 hybrid contribution 0.806 -0.715 1.352 1.728 sum 0.918 -19.859 -3.250 20.144 Atomic orbital electron populations 1.21114 0.84144 0.99392 0.97482 1.43877 1.00854 1.01586 1.86043 1.18760 1.06054 0.90305 1.23144 0.90373 1.25427 0.96862 0.96518 0.97744 1.69898 1.08465 1.36043 1.39248 0.87066 0.77772 0.79998 0.85161 1.21767 1.22712 1.19546 1.21805 0.97512 0.89252 0.93007 1.22792 0.93742 0.83012 0.97352 0.88427 1.86628 1.28915 1.62429 1.55279 1.24033 1.01480 0.98756 0.81156 1.86307 1.74865 1.29096 1.30253 1.19223 0.95377 0.86801 0.92870 1.21250 1.04557 0.96668 0.98171 1.21013 0.97423 0.94793 0.97549 1.20880 1.02480 1.00532 0.91752 1.21010 0.99245 0.92587 1.00820 1.17052 1.04989 0.92236 0.81331 1.91514 1.88411 1.77656 1.53443 0.97282 0.93321 0.95444 0.92782 0.93308 0.92259 0.78368 0.91726 0.91429 0.84482 0.85198 0.85053 0.84261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.45 10.70 59.85 0.64 3.09 16 2 N -0.60 -14.09 2.45 -181.11 -0.44 -14.53 16 3 C -0.25 -7.01 9.39 -15.06 -0.14 -7.15 16 4 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 5 C 0.03 0.96 5.29 -17.43 -0.09 0.87 16 6 N -0.90 -26.63 13.97 55.49 0.78 -25.86 16 7 Si 0.87 21.17 25.09 -169.99 -4.27 16.90 16 8 H -0.29 -6.61 6.68 56.52 0.38 -6.23 16 9 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 11 C 0.11 2.26 4.21 -4.04 -0.02 2.24 16 12 C 0.09 1.77 3.49 -26.73 -0.09 1.68 16 13 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 14 O -0.53 -11.65 12.78 -40.08 -0.51 -12.17 16 15 C 0.02 0.34 4.38 37.16 0.16 0.50 16 16 O -0.29 -4.96 9.97 -24.49 -0.24 -5.20 16 17 C 0.10 1.53 6.69 -39.18 -0.26 1.26 16 18 C -0.19 -2.21 9.04 -39.45 -0.36 -2.56 16 19 C -0.09 -0.85 10.04 -39.59 -0.40 -1.25 16 20 C -0.14 -1.24 10.04 -39.56 -0.40 -1.63 16 21 C -0.12 -1.24 10.02 -39.54 -0.40 -1.64 16 22 C 0.06 0.89 7.31 -39.30 -0.29 0.61 16 23 F -0.13 -2.09 17.11 2.25 0.04 -2.05 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.05 0.96 8.00 -51.93 -0.42 0.54 16 26 H 0.03 0.46 8.10 -51.93 -0.42 0.04 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.06 1.29 3.38 -51.93 -0.18 1.12 16 30 H 0.37 7.62 9.05 45.56 0.41 8.03 16 31 H 0.06 0.93 7.66 -51.93 -0.40 0.53 16 32 H 0.07 0.86 7.66 -51.93 -0.40 0.47 16 33 H 0.14 1.44 6.30 -52.48 -0.33 1.11 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 307.92 15.07 4.64 4.64 Total: -1.00 -32.19 307.92 -5.49 -37.68 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -3.84 Total: 4.58 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -1.64 Total: -3.99 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.33 Total: -40.39 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.76 Total: -17.37 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.27 Total: 16.90 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.19 -5.49 -37.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264288973.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.717 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds