Wall clock time and date at job start Mon Mar 30 2020 00:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36928 * 120.00164 * 2 1 4 4 H 1.08001 * 120.00344 * 321.91263 * 3 2 1 5 5 C 1.38817 * 119.99999 * 141.92187 * 3 2 1 6 6 N 1.31616 * 120.00167 * 157.18997 * 5 3 2 7 7 Si 1.86800 * 119.99861 * 337.18453 * 5 3 2 8 8 H 1.48498 * 109.47053 * 95.67695 * 7 5 3 9 9 H 1.48501 * 109.47152 * 215.67779 * 7 5 3 10 10 H 1.48500 * 109.46920 * 335.67881 * 7 5 3 11 11 C 1.46505 * 119.99548 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46791 * 90.00236 * 11 2 1 13 13 H 1.09000 * 109.47115 * 304.99368 * 12 11 2 14 14 O 1.42901 * 109.47350 * 64.99947 * 12 11 2 15 15 C 1.53005 * 109.46827 * 185.00099 * 12 11 2 16 16 O 1.42895 * 109.46846 * 175.00004 * 15 12 11 17 17 C 1.35966 * 116.99766 * 179.97438 * 16 15 12 18 18 C 1.38655 * 120.06251 * 0.02562 * 17 16 15 19 19 C 1.38177 * 119.97200 * 179.97438 * 18 17 16 20 20 C 1.38264 * 120.09327 * 0.02562 * 19 18 17 21 21 C 1.38256 * 120.12600 * 0.02562 * 20 19 18 22 22 C 1.38339 * 120.02969 * 359.70315 * 21 20 19 23 23 F 1.35100 * 120.04991 * 180.27755 * 22 21 20 24 24 H 1.09000 * 109.47629 * 265.68984 * 1 2 3 25 25 H 1.09000 * 109.46869 * 25.68992 * 1 2 3 26 26 H 1.08999 * 109.47273 * 145.68846 * 1 2 3 27 27 H 0.96995 * 119.99946 * 179.97438 * 6 5 3 28 28 H 1.09003 * 109.47315 * 329.99951 * 11 2 1 29 29 H 1.09001 * 109.46877 * 210.00146 * 11 2 1 30 30 H 0.96701 * 113.99642 * 59.99869 * 14 12 11 31 31 H 1.09007 * 109.46928 * 294.99490 * 15 12 11 32 32 H 1.08994 * 109.47403 * 54.99722 * 15 12 11 33 33 H 1.08003 * 120.01697 * 359.97438 * 18 17 16 34 34 H 1.07997 * 119.95751 * 179.97438 * 19 18 17 35 35 H 1.08003 * 119.93845 * 179.97438 * 20 19 18 36 36 H 1.07995 * 119.98686 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 1.7822 2.0216 -0.5769 5 6 3.3163 1.3137 0.7414 6 7 4.2022 2.2328 0.4211 7 14 3.6286 0.1814 2.1939 8 1 4.4685 -0.9630 1.7577 9 1 4.3324 0.9322 3.2645 10 1 2.3333 -0.3253 2.7141 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4418 13 1 1.5061 -1.7558 -1.9808 14 8 3.3209 -0.7735 -2.0811 15 6 3.1058 -3.0946 -1.4430 16 8 3.2377 -3.5578 -2.7883 17 6 3.8044 -4.7807 -2.9673 18 6 4.2239 -5.5190 -1.8712 19 6 4.7991 -6.7618 -2.0552 20 6 4.9575 -7.2704 -3.3311 21 6 4.5416 -6.5371 -4.4269 22 6 3.9599 -5.2947 -4.2484 23 9 3.5482 -4.5803 -5.3186 24 1 -0.3634 -0.0772 1.0247 25 1 -0.3633 0.9261 -0.4455 26 1 -0.3634 -0.8488 -0.5793 27 1 5.0171 2.3224 0.9394 28 1 1.6083 -2.0282 0.5148 29 1 3.1498 -1.1383 0.5144 30 1 4.1836 -0.6820 -1.6539 31 1 4.0917 -3.0312 -0.9823 32 1 2.4850 -3.7901 -0.8784 33 1 4.1012 -5.1228 -0.8739 34 1 5.1262 -7.3364 -1.2013 35 1 5.4078 -8.2419 -3.4721 36 1 4.6660 -6.9367 -5.4225 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264288973.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:23 Heat of formation + Delta-G solvation = -98.681061 kcal Electronic energy + Delta-G solvation = -20595.483844 eV Core-core repulsion = 17187.896155 eV Total energy + Delta-G solvation = -3407.587690 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.83736 -41.09775 -39.25079 -38.09777 -36.43661 -33.74239 -32.01011 -31.64717 -30.53338 -28.23838 -27.33927 -24.32651 -23.47162 -22.88893 -22.44158 -19.59409 -18.94858 -18.05860 -17.83931 -17.72376 -17.16488 -16.84727 -16.46904 -15.89686 -15.86009 -15.45337 -15.36703 -15.30812 -14.55155 -14.46171 -14.11659 -13.79278 -13.70357 -13.26718 -13.11695 -12.71569 -12.64462 -12.39657 -12.23738 -12.04450 -12.00037 -11.85826 -11.52155 -11.00579 -10.61829 -9.95325 -9.22561 -8.75055 -8.14716 -5.53788 0.12022 0.26815 1.26473 1.43785 1.54199 1.96947 2.42676 2.60578 3.04337 3.24535 3.38824 3.57641 3.71074 3.83457 3.92418 4.07496 4.15297 4.25499 4.31316 4.33981 4.38097 4.58632 4.65197 4.69450 4.97655 4.99156 5.08077 5.09902 5.12022 5.25697 5.41776 5.71613 5.95791 6.20001 6.29011 6.83062 7.00340 7.62594 8.03624 9.05408 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026521 B = 0.004718 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.516340 B = 5933.579377 C = 6241.077480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.617 5.617 3 C -0.251 4.251 4 H 0.027 0.973 5 C -0.017 4.017 6 N -0.947 5.947 7 Si 0.941 3.059 8 H -0.261 1.261 9 H -0.311 1.311 10 H -0.260 1.260 11 C 0.109 3.891 12 C 0.095 3.905 13 H 0.090 0.910 14 O -0.560 6.560 15 C 0.032 3.968 16 O -0.326 6.326 17 C 0.072 3.928 18 C -0.192 4.192 19 C -0.083 4.083 20 C -0.126 4.126 21 C -0.115 4.115 22 C 0.026 3.974 23 F -0.155 7.155 24 H 0.024 0.976 25 H 0.036 0.964 26 H 0.058 0.942 27 H 0.262 0.738 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.371 0.629 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.150 0.850 34 H 0.166 0.834 35 H 0.170 0.830 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.017 -23.853 -2.539 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.341 5.341 3 C -0.381 4.381 4 H 0.045 0.955 5 C -0.213 4.213 6 N -0.590 5.590 7 Si 0.769 3.231 8 H -0.188 1.188 9 H -0.239 1.239 10 H -0.184 1.184 11 C -0.017 4.017 12 C 0.033 3.967 13 H 0.108 0.892 14 O -0.364 6.364 15 C -0.043 4.043 16 O -0.240 6.240 17 C 0.026 3.974 18 C -0.210 4.210 19 C -0.100 4.100 20 C -0.144 4.144 21 C -0.134 4.134 22 C 0.006 3.994 23 F -0.134 7.134 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.168 0.832 34 H 0.183 0.817 35 H 0.188 0.812 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.491 -23.521 -3.075 23.726 hybrid contribution 0.654 0.554 0.765 1.149 sum 1.144 -22.967 -2.310 23.111 Atomic orbital electron populations 1.21222 0.82199 1.00204 0.98742 1.44011 1.02273 1.01331 1.86494 1.18526 1.06329 0.91051 1.22216 0.95483 1.26011 0.96437 0.98725 1.00128 1.70045 1.09309 1.39042 1.40650 0.85908 0.78282 0.78569 0.80358 1.18771 1.23931 1.18376 1.21902 0.97236 0.88611 0.93951 1.22700 0.93365 0.84604 0.96070 0.89218 1.86592 1.29453 1.64026 1.56345 1.23790 1.02193 0.97022 0.81341 1.86211 1.76073 1.30897 1.30814 1.19530 0.97262 0.86547 0.94066 1.21500 1.04384 0.97367 0.97778 1.21492 0.95610 0.93863 0.99071 1.21390 1.00601 1.01474 0.90904 1.21365 0.98027 0.91211 1.02756 1.17614 1.07156 0.93764 0.80863 1.91444 1.89004 1.78464 1.54442 0.95819 0.94556 0.92365 0.92866 0.89366 0.93442 0.78201 0.90820 0.88280 0.83236 0.81693 0.81215 0.82154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.61 10.70 127.77 1.37 5.98 16 2 N -0.62 -28.55 2.45 -726.92 -1.78 -30.33 16 3 C -0.25 -14.29 9.39 84.04 0.79 -13.50 16 4 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 5 C -0.02 -0.95 5.29 84.86 0.45 -0.50 16 6 N -0.95 -58.28 13.97 21.65 0.30 -57.97 16 7 Si 0.94 43.35 25.09 68.60 1.72 45.07 16 8 H -0.26 -10.77 6.68 99.48 0.66 -10.11 16 9 H -0.31 -14.80 7.11 99.48 0.71 -14.09 16 10 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 11 C 0.11 4.17 4.21 86.38 0.36 4.53 16 12 C 0.09 3.48 3.49 30.60 0.11 3.59 16 13 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 14 O -0.56 -25.32 12.78 -144.34 -1.84 -27.16 16 15 C 0.03 0.93 4.38 71.98 0.31 1.24 16 16 O -0.33 -10.99 9.97 -88.53 -0.88 -11.87 16 17 C 0.07 2.04 6.69 22.53 0.15 2.19 16 18 C -0.19 -3.94 9.04 22.36 0.20 -3.73 16 19 C -0.08 -1.19 10.04 22.26 0.22 -0.96 16 20 C -0.13 -1.69 10.04 22.28 0.22 -1.47 16 21 C -0.12 -2.15 10.02 22.30 0.22 -1.92 16 22 C 0.03 0.71 7.31 22.45 0.16 0.87 16 23 F -0.15 -5.09 17.11 44.97 0.77 -4.32 16 24 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.04 1.44 8.00 -2.39 -0.02 1.42 16 26 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 27 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.09 2.69 8.07 -2.39 -0.02 2.67 16 29 H 0.05 1.94 3.38 -2.39 -0.01 1.93 16 30 H 0.37 15.84 9.05 -74.06 -0.67 15.17 16 31 H 0.07 1.96 7.66 -2.38 -0.02 1.94 16 32 H 0.10 2.18 7.66 -2.39 -0.02 2.17 16 33 H 0.15 2.58 6.30 -2.91 -0.02 2.57 16 34 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 35 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 36 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -73.97 307.92 3.25 -70.72 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.38 Total: 19.56 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 4.58 Total: -3.68 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -1.48 Total: -88.31 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -2.73 Total: -39.04 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.77 Total: -4.32 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.72 Total: 45.07 kcal Total: -73.97 3.25 -70.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264288973.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.966 kcal (2) G-P(sol) polarization free energy of solvation -73.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds