Wall clock time and date at job start Mon Mar 30 2020 00:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47235 * 59.99855 * 9 7 5 11 11 H 1.48500 * 109.47168 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47142 * 299.99797 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 O 1.42903 * 109.46878 * 179.97438 * 15 13 3 17 17 C 1.35073 * 116.99720 * 179.97438 * 16 15 13 18 18 N 1.31901 * 126.63721 * 179.71089 * 17 16 15 19 19 C 1.34378 * 105.53063 * 179.86847 * 18 17 16 20 20 C 1.50705 * 126.23034 * 180.12984 * 19 18 17 21 21 N 1.29977 * 107.53837 * 0.40551 * 19 18 17 22 22 O 1.21283 * 110.43367 * 359.74425 * 21 19 18 23 23 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 24 24 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 26 26 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 27 27 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 28 28 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 29 29 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 30 30 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 32 32 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 33 33 H 1.08987 * 109.47211 * 270.30331 * 20 19 18 34 34 H 1.09004 * 109.47109 * 30.30751 * 20 19 18 35 35 H 1.09003 * 109.46990 * 150.30085 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.1403 0.6387 -3.5947 11 1 6.1604 2.7947 -4.7040 12 1 6.8411 2.6188 -2.3829 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 8 2.3022 2.1813 3.5585 17 6 2.1300 1.6946 4.8066 18 7 2.3611 2.3311 5.9385 19 6 2.0469 1.4597 6.9120 20 6 2.1361 1.7109 8.3953 21 7 1.6578 0.3586 6.3414 22 8 1.6973 0.4703 5.1344 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.5818 1.6876 -2.0283 29 1 2.0956 3.1410 -1.1384 30 1 3.6747 3.5148 -4.4447 31 1 0.9443 1.0114 2.5302 32 1 2.6227 0.4186 2.5299 33 1 3.1264 1.4289 8.7526 34 1 1.9652 2.7687 8.5955 35 1 1.3811 1.1171 8.9104 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264506769.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:30 Heat of formation + Delta-G solvation = 6.135756 kcal Electronic energy + Delta-G solvation = -20335.455348 eV Core-core repulsion = 16952.332818 eV Total energy + Delta-G solvation = -3383.122530 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.64613 -40.00261 -38.46214 -36.22889 -35.51598 -32.93977 -32.41178 -30.29967 -29.33349 -29.29739 -26.68828 -24.14284 -23.24556 -23.09327 -21.99009 -19.16043 -18.81845 -18.63196 -17.10845 -16.62213 -16.35995 -16.10403 -15.78578 -14.79282 -14.30466 -14.16624 -13.89515 -13.81668 -13.57943 -13.18539 -12.96061 -12.60462 -12.18909 -12.15215 -11.98722 -11.72319 -11.31685 -11.18485 -11.14419 -11.01664 -10.84627 -10.62254 -10.21673 -9.76346 -9.54687 -9.22977 -8.50102 -7.89874 -6.11712 -4.17281 1.05945 1.62928 2.10269 2.70415 3.02971 3.28481 3.33482 3.36635 3.62205 3.73822 4.36386 4.39573 4.57830 4.76682 4.83617 5.13387 5.13813 5.18094 5.23306 5.30419 5.44949 5.59658 5.61952 5.77312 5.86870 6.08495 6.33274 6.42466 6.88665 7.28329 7.36006 7.83205 8.01429 8.11264 8.13946 8.68542 8.88057 9.48143 10.96489 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028548 B = 0.003998 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.556850 B = 7002.428578 C = 7510.001565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.587 5.587 4 C 0.248 3.752 5 C -0.533 4.533 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.510 3.490 14 O -0.511 6.511 15 C 0.031 3.969 16 O -0.212 6.212 17 C 0.369 3.631 18 N -0.478 5.478 19 C 0.194 3.806 20 C -0.061 4.061 21 N -0.385 5.385 22 O 0.035 5.965 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.265 0.735 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.027 -8.371 16.358 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.321 5.321 4 C 0.130 3.870 5 C -0.572 4.572 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.293 3.707 14 O -0.386 6.386 15 C -0.047 4.047 16 O -0.113 6.113 17 C 0.114 3.886 18 N -0.230 5.230 19 C -0.079 4.079 20 C -0.120 4.120 21 N -0.108 5.108 22 O -0.019 6.019 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.856 -7.762 16.534 19.181 hybrid contribution 0.915 -0.367 -0.796 1.267 sum -4.940 -8.128 15.738 18.389 Atomic orbital electron populations 1.22247 0.96347 1.01858 1.02541 1.21558 0.93866 0.83775 1.03242 1.48209 1.63521 1.13468 1.06884 1.19378 0.96626 0.93747 0.77229 1.21372 0.96783 1.32482 1.06517 0.92367 1.24926 0.97980 0.94746 0.96297 1.69914 1.35809 1.33132 1.14320 0.86533 0.84581 0.78284 0.77897 1.20199 1.21110 1.20090 1.19377 0.80290 0.87145 0.83859 1.90778 1.44196 1.17276 1.86390 1.23195 1.03581 0.93294 0.84667 1.86437 1.80790 1.36868 1.07217 1.26407 0.91237 0.81735 0.89232 1.72318 1.27221 1.28414 0.95015 1.25752 0.97106 0.85391 0.99699 1.20165 1.04258 1.04508 0.83020 1.74640 1.25171 1.22692 0.88275 1.85438 1.64599 1.32755 1.19139 0.91632 0.91725 0.93137 0.89122 0.91730 0.94399 0.93586 0.92516 0.87856 0.87749 0.89082 0.88787 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 37.16 0.38 -1.61 16 2 C 0.10 1.40 5.93 -4.05 -0.02 1.37 16 3 N -0.59 -11.47 2.46 -175.06 -0.43 -11.90 16 4 C 0.25 6.17 5.16 -5.19 -0.03 6.14 16 5 C -0.53 -14.58 9.39 -34.44 -0.32 -14.91 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 9 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.51 10.08 7.75 -10.98 -0.09 10.00 16 14 O -0.51 -12.80 16.08 -14.35 -0.23 -13.04 16 15 C 0.03 0.44 4.74 36.01 0.17 0.61 16 16 O -0.21 -3.47 9.71 -47.69 -0.46 -3.93 16 17 C 0.37 5.45 9.14 52.40 0.48 5.93 16 18 N -0.48 -7.17 11.58 -13.76 -0.16 -7.33 16 19 C 0.19 2.37 8.21 -156.45 -1.28 1.08 16 20 C -0.06 -0.44 10.51 36.01 0.38 -0.07 16 21 N -0.38 -5.03 12.15 31.08 0.38 -4.65 16 22 O 0.03 0.46 10.85 -5.77 -0.06 0.39 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.55 7.22 -51.93 -0.38 0.17 16 26 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 27 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 28 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 29 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.10 1.12 7.19 -51.93 -0.37 0.75 16 32 H 0.10 1.19 7.40 -51.93 -0.38 0.80 16 33 H 0.09 0.53 8.14 -51.94 -0.42 0.11 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -33.98 312.14 -5.33 -39.31 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -4.35 Total: -4.98 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -0.43 Total: 10.20 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.52 Total: -49.06 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.76 Total: -16.57 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.98 -5.33 -39.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264506769.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.442 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds