Wall clock time and date at job start Mon Mar 30 2020 00:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47235 * 59.99855 * 9 7 5 11 11 H 1.48500 * 109.47168 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47142 * 299.99797 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 O 1.42903 * 109.46878 * 179.97438 * 15 13 3 17 17 C 1.35073 * 116.99720 * 179.97438 * 16 15 13 18 18 N 1.31901 * 126.63721 * 179.71089 * 17 16 15 19 19 C 1.34378 * 105.53063 * 179.86847 * 18 17 16 20 20 C 1.50705 * 126.23034 * 180.12984 * 19 18 17 21 21 N 1.29977 * 107.53837 * 0.40551 * 19 18 17 22 22 O 1.21283 * 110.43367 * 359.74425 * 21 19 18 23 23 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 24 24 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 26 26 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 27 27 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 28 28 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 29 29 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 30 30 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 32 32 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 33 33 H 1.08987 * 109.47211 * 270.30331 * 20 19 18 34 34 H 1.09004 * 109.47109 * 30.30751 * 20 19 18 35 35 H 1.09003 * 109.46990 * 150.30085 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.1403 0.6387 -3.5947 11 1 6.1604 2.7947 -4.7040 12 1 6.8411 2.6188 -2.3829 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 8 2.3022 2.1813 3.5585 17 6 2.1300 1.6946 4.8066 18 7 2.3611 2.3311 5.9385 19 6 2.0469 1.4597 6.9120 20 6 2.1361 1.7109 8.3953 21 7 1.6578 0.3586 6.3414 22 8 1.6973 0.4703 5.1344 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.5818 1.6876 -2.0283 29 1 2.0956 3.1410 -1.1384 30 1 3.6747 3.5148 -4.4447 31 1 0.9443 1.0114 2.5302 32 1 2.6227 0.4186 2.5299 33 1 3.1264 1.4289 8.7526 34 1 1.9652 2.7687 8.5955 35 1 1.3811 1.1171 8.9104 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264506769.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:29 Heat of formation + Delta-G solvation = -19.598261 kcal Electronic energy + Delta-G solvation = -20336.571259 eV Core-core repulsion = 16952.332818 eV Total energy + Delta-G solvation = -3384.238440 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.64064 -41.37100 -39.85131 -37.20812 -37.09586 -34.95268 -33.40745 -31.73350 -30.65805 -30.06578 -28.44486 -25.18670 -25.01385 -24.27809 -23.14973 -20.31036 -20.21562 -19.66506 -18.67749 -18.23607 -17.66819 -17.39706 -17.28719 -16.49674 -15.82447 -15.38637 -14.94295 -14.78899 -14.46547 -14.42926 -14.35648 -13.68562 -13.63815 -13.31680 -13.21986 -13.08757 -13.02682 -12.65603 -12.52064 -12.20203 -12.16200 -12.10679 -11.88873 -11.75615 -10.85678 -10.64829 -10.57088 -9.58388 -8.24101 -6.38568 0.02975 0.49231 1.12498 1.37266 1.41575 1.47816 1.54330 1.63765 2.24322 2.40761 2.89243 3.06487 3.28303 3.44102 3.74615 3.80664 4.14785 4.36315 4.39363 4.60751 4.61493 4.66163 4.79302 4.88952 4.96722 5.04671 5.13729 5.19029 5.36609 5.40872 5.52960 5.77812 6.02545 6.55114 6.70592 7.01794 7.16286 7.34168 8.83235 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028548 B = 0.003998 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.556850 B = 7002.428578 C = 7510.001565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 N -0.590 5.590 4 C 0.263 3.737 5 C -0.547 4.547 6 H 0.057 0.943 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.258 1.258 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.501 3.499 14 O -0.580 6.580 15 C 0.044 3.956 16 O -0.239 6.239 17 C 0.368 3.632 18 N -0.507 5.507 19 C 0.196 3.804 20 C -0.062 4.062 21 N -0.394 5.394 22 O 0.043 5.957 23 H 0.041 0.959 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.032 0.968 29 H -0.002 1.002 30 H 0.268 0.732 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.956 -10.801 18.158 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.031 4.031 3 N -0.322 5.322 4 C 0.142 3.858 5 C -0.586 4.586 6 H 0.075 0.925 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.182 1.182 11 H -0.205 1.205 12 H -0.205 1.205 13 C 0.287 3.713 14 O -0.459 6.459 15 C -0.033 4.033 16 O -0.142 6.142 17 C 0.112 3.888 18 N -0.259 5.259 19 C -0.076 4.076 20 C -0.120 4.120 21 N -0.118 5.118 22 O -0.010 6.010 23 H 0.060 0.940 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.125 0.875 28 H 0.050 0.950 29 H 0.017 0.983 30 H 0.076 0.924 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.817 -10.267 18.348 21.815 hybrid contribution 0.842 0.378 -1.297 1.592 sum -4.975 -9.888 17.051 20.329 Atomic orbital electron populations 1.22204 0.94234 1.03939 1.01978 1.21961 0.95598 0.80589 1.04946 1.48178 1.63239 1.15425 1.05331 1.18800 0.95600 0.91666 0.79718 1.21704 0.97890 1.32342 1.06642 0.92458 1.25836 1.02306 0.94423 0.96460 1.70036 1.37813 1.34072 1.14782 0.85488 0.79054 0.79121 0.77287 1.18241 1.20499 1.20492 1.20311 0.78693 0.86573 0.85697 1.90741 1.47203 1.20373 1.87630 1.23169 1.06741 0.92416 0.81013 1.86373 1.81357 1.38210 1.08223 1.26228 0.91693 0.82354 0.88523 1.72324 1.27939 1.29749 0.95840 1.26559 0.95583 0.84395 1.01106 1.20456 1.05942 1.05612 0.80012 1.74621 1.25890 1.23063 0.88212 1.85434 1.64387 1.31829 1.19312 0.94022 0.88215 0.91963 0.89997 0.87458 0.95002 0.98342 0.92356 0.83843 0.84157 0.87345 0.87847 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.42 10.24 71.98 0.74 -2.68 16 2 C 0.09 2.34 5.93 86.38 0.51 2.86 16 3 N -0.59 -23.10 2.46 -826.16 -2.03 -25.13 16 4 C 0.26 13.63 5.16 85.64 0.44 14.08 16 5 C -0.55 -30.68 9.39 25.60 0.24 -30.44 16 6 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 7 C 0.01 0.51 5.46 84.65 0.46 0.98 16 8 N -0.93 -55.37 13.29 21.45 0.28 -55.08 16 9 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 C 0.50 19.88 7.75 87.66 0.68 20.56 16 14 O -0.58 -30.39 16.08 16.01 0.26 -30.13 16 15 C 0.04 1.13 4.74 71.24 0.34 1.47 16 16 O -0.24 -7.62 9.71 -54.06 -0.52 -8.14 16 17 C 0.37 10.28 9.14 130.37 1.19 11.47 16 18 N -0.51 -14.56 11.58 -427.93 -4.96 -19.51 16 19 C 0.20 4.38 8.21 138.49 1.14 5.52 16 20 C -0.06 -0.73 10.51 71.24 0.75 0.02 16 21 N -0.39 -9.35 12.15 -59.71 -0.73 -10.07 16 22 O 0.04 1.03 10.85 94.40 1.02 2.05 16 23 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.06 1.15 7.22 -2.39 -0.02 1.13 16 26 H 0.08 2.28 8.07 -2.38 -0.02 2.26 16 27 H 0.11 1.88 6.44 -2.39 -0.02 1.86 16 28 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 29 H 0.00 -0.09 7.42 -2.39 -0.02 -0.11 16 30 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.14 2.56 7.19 -2.39 -0.02 2.54 16 32 H 0.14 2.64 7.40 -2.39 -0.02 2.62 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -78.56 312.14 2.95 -75.61 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: 1.11 Total: 0.34 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 6.49 Total: 23.82 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -7.43 Total: -109.80 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: 0.76 Total: -36.22 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -78.56 2.95 -75.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264506769.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.007 kcal (2) G-P(sol) polarization free energy of solvation -78.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds