Wall clock time and date at job start Mon Mar 30 2020 01:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 C 1.52992 * 109.47286 * 69.99677 * 8 6 5 10 10 C 1.53007 * 109.46750 * 189.99951 * 8 6 5 11 11 F 1.39903 * 109.47112 * 309.99415 * 8 6 5 12 12 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 13 13 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 14 14 C 1.46509 * 125.97450 * 359.96761 * 13 2 1 15 15 C 1.50698 * 109.47025 * 89.99735 * 14 13 2 16 16 H 1.08000 * 120.00464 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99358 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00418 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99496 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47006 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46890 * 120.00230 * 19 17 15 22 22 H 1.48501 * 109.46779 * 239.99778 * 19 17 15 23 23 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 26 26 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 27 27 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 28 28 H 1.09003 * 109.47065 * 60.00384 * 9 8 6 29 29 H 1.09004 * 109.47373 * 179.97438 * 9 8 6 30 30 H 1.08991 * 109.47426 * 299.99920 * 9 8 6 31 31 H 1.09001 * 109.47102 * 59.99342 * 10 8 6 32 32 H 1.08992 * 109.47105 * 179.97438 * 10 8 6 33 33 H 1.09005 * 109.46998 * 299.99820 * 10 8 6 34 34 H 1.08994 * 109.46750 * 210.00045 * 14 13 2 35 35 H 1.09004 * 109.46474 * 329.99737 * 14 13 2 36 36 H 0.96998 * 120.00265 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 6 6.5598 3.6029 -1.3389 10 6 5.4409 5.1468 0.2757 11 9 6.7338 3.2781 1.0252 12 7 3.6337 -0.6577 -0.0036 13 7 2.3017 -1.0909 -0.0059 14 6 1.8500 -2.4847 -0.0128 15 6 1.6945 -2.9553 -1.4359 16 1 1.9108 -2.2836 -2.2535 17 6 1.2770 -4.2437 -1.6941 18 7 1.0140 -5.0617 -0.6985 19 14 1.0848 -4.8273 -3.4582 20 1 1.4409 -3.7240 -4.3861 21 1 1.9842 -5.9844 -3.6975 22 1 -0.3229 -5.2377 -3.6932 23 1 -0.3633 -0.0056 1.0277 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8928 -0.5090 26 1 1.9719 2.1210 -0.0004 27 1 5.6584 1.0776 0.0049 28 1 5.8780 3.9299 -2.1240 29 1 7.4434 4.2412 -1.3366 30 1 6.8574 2.5707 -1.5228 31 1 4.9412 5.2142 1.2421 32 1 6.3246 5.7847 0.2787 33 1 4.7590 5.4737 -0.5094 34 1 2.5849 -3.1072 0.4976 35 1 0.8916 -2.5584 0.5012 36 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271062915.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:47 Heat of formation + Delta-G solvation = -15.798727 kcal Electronic energy + Delta-G solvation = -20404.669158 eV Core-core repulsion = 17032.968267 eV Total energy + Delta-G solvation = -3371.700891 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.128 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.13752 -40.79825 -39.41947 -35.02947 -33.93332 -33.36809 -31.47062 -30.85454 -27.78992 -26.85265 -26.39261 -24.52814 -22.76156 -20.81825 -19.88446 -19.26618 -17.55729 -16.72212 -16.47578 -16.15464 -15.61279 -15.15627 -14.91240 -14.75353 -14.25087 -13.92159 -13.43025 -13.12019 -12.77265 -12.65897 -12.51461 -12.38864 -12.37510 -12.22454 -12.14849 -11.67466 -11.45643 -11.28762 -11.09673 -10.87943 -10.48941 -10.27791 -9.98064 -9.63177 -9.55358 -8.67452 -8.00049 -7.52809 -6.28223 -4.36035 2.07499 2.57942 2.82259 3.18505 3.26562 3.32247 3.62488 3.67688 4.10741 4.15752 4.28099 4.42201 4.52935 5.05547 5.16436 5.24106 5.33961 5.38799 5.62203 5.65426 5.70243 5.83547 5.89363 6.06607 6.16318 6.42251 6.46303 6.65080 6.88960 7.01980 7.35129 7.53097 7.64510 7.85713 7.99895 8.04550 8.59179 8.72076 9.30597 10.79161 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.030540 B = 0.004120 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.622337 B = 6794.693820 C = 7108.445917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.290 4.290 4 C 0.259 3.741 5 N -0.620 5.620 6 C 0.504 3.496 7 O -0.500 6.500 8 C 0.109 3.891 9 C -0.174 4.174 10 C -0.157 4.157 11 F -0.195 7.195 12 N -0.316 5.316 13 N -0.314 5.314 14 C 0.257 3.743 15 C -0.537 4.537 16 H 0.065 0.935 17 C 0.066 3.934 18 N -0.891 5.891 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.280 1.280 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.159 0.841 27 H 0.413 0.587 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.039 16.439 0.736 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.321 4.321 4 C 0.007 3.993 5 N -0.267 5.267 6 C 0.287 3.713 7 O -0.373 6.373 8 C 0.087 3.913 9 C -0.232 4.232 10 C -0.215 4.215 11 F -0.175 7.175 12 N -0.147 5.147 13 N -0.097 5.097 14 C 0.140 3.860 15 C -0.575 4.575 16 H 0.083 0.917 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.733 3.267 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.090 0.910 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.176 0.824 27 H 0.249 0.751 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.890 15.426 0.809 16.914 hybrid contribution 0.070 -0.160 -0.832 0.850 sum 6.960 15.266 -0.023 16.778 Atomic orbital electron populations 1.20387 0.87797 1.03928 1.02607 1.21074 0.94981 0.87083 1.00744 1.21226 0.89647 0.99823 1.21383 1.18987 0.87077 0.89658 1.03596 1.42416 1.07963 1.04948 1.71389 1.20803 0.91192 0.82024 0.77240 1.90675 1.25863 1.73729 1.46991 1.21180 0.86392 0.95576 0.88132 1.22421 1.01938 1.04600 0.94244 1.22183 1.02915 0.91563 1.04858 1.92930 1.70524 1.91634 1.62438 1.77269 1.00025 1.08422 1.28989 1.49033 1.00908 1.07870 1.51878 1.19726 0.96042 0.71236 0.99025 1.21356 1.46834 0.98012 0.91320 0.91675 1.24931 0.94645 0.96022 0.98169 1.69924 1.44873 1.06967 1.31112 0.86299 0.77897 0.78798 0.83689 1.19583 1.20634 1.20604 0.91011 0.89832 0.90575 0.82363 0.75108 0.89672 0.89805 0.90594 0.90607 0.90522 0.89489 0.92927 0.92703 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.50 9.89 36.01 0.36 -1.15 16 2 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 3 C -0.29 -5.95 9.52 -39.83 -0.38 -6.33 16 4 C 0.26 5.32 8.11 -154.38 -1.25 4.07 16 5 N -0.62 -9.95 5.42 -11.13 -0.06 -10.01 16 6 C 0.50 7.35 6.76 -10.98 -0.07 7.28 16 7 O -0.50 -8.53 13.11 5.55 0.07 -8.45 16 8 C 0.11 1.15 1.54 -91.77 -0.14 1.00 16 9 C -0.17 -1.38 8.91 37.15 0.33 -1.05 16 10 C -0.16 -1.38 8.28 37.16 0.31 -1.08 16 11 F -0.19 -2.24 16.74 2.25 0.04 -2.20 16 12 N -0.32 -7.36 12.59 31.44 0.40 -6.96 16 13 N -0.31 -7.46 3.59 -58.32 -0.21 -7.67 16 14 C 0.26 6.58 5.81 -5.19 -0.03 6.55 16 15 C -0.54 -14.70 9.39 -34.44 -0.32 -15.02 16 16 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 17 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -24.89 13.29 55.43 0.74 -24.16 16 19 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 25 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.16 3.12 5.92 -52.49 -0.31 2.81 16 27 H 0.41 5.62 8.79 -40.82 -0.36 5.26 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.74 7.99 -51.93 -0.41 0.33 16 34 H 0.05 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.06 1.38 7.65 -51.93 -0.40 0.99 16 36 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 315.49 15.07 4.75 4.75 Total: -1.00 -31.50 315.49 -5.97 -37.47 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.81 Total: 3.97 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.87 Total: -2.66 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.86 Total: -48.80 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.07 Total: -8.45 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.50 -5.97 -37.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271062915.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.672 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds