Wall clock time and date at job start Mon Mar 30 2020 01:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 C 1.52992 * 109.47286 * 69.99677 * 8 6 5 10 10 C 1.53007 * 109.46750 * 189.99951 * 8 6 5 11 11 F 1.39903 * 109.47112 * 309.99415 * 8 6 5 12 12 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 13 13 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 14 14 C 1.46509 * 125.97450 * 359.96761 * 13 2 1 15 15 C 1.50698 * 109.47025 * 89.99735 * 14 13 2 16 16 H 1.08000 * 120.00464 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99358 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00418 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99496 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47006 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46890 * 120.00230 * 19 17 15 22 22 H 1.48501 * 109.46779 * 239.99778 * 19 17 15 23 23 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 26 26 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 27 27 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 28 28 H 1.09003 * 109.47065 * 60.00384 * 9 8 6 29 29 H 1.09004 * 109.47373 * 179.97438 * 9 8 6 30 30 H 1.08991 * 109.47426 * 299.99920 * 9 8 6 31 31 H 1.09001 * 109.47102 * 59.99342 * 10 8 6 32 32 H 1.08992 * 109.47105 * 179.97438 * 10 8 6 33 33 H 1.09005 * 109.46998 * 299.99820 * 10 8 6 34 34 H 1.08994 * 109.46750 * 210.00045 * 14 13 2 35 35 H 1.09004 * 109.46474 * 329.99737 * 14 13 2 36 36 H 0.96998 * 120.00265 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 6 6.5598 3.6029 -1.3389 10 6 5.4409 5.1468 0.2757 11 9 6.7338 3.2781 1.0252 12 7 3.6337 -0.6577 -0.0036 13 7 2.3017 -1.0909 -0.0059 14 6 1.8500 -2.4847 -0.0128 15 6 1.6945 -2.9553 -1.4359 16 1 1.9108 -2.2836 -2.2535 17 6 1.2770 -4.2437 -1.6941 18 7 1.0140 -5.0617 -0.6985 19 14 1.0848 -4.8273 -3.4582 20 1 1.4409 -3.7240 -4.3861 21 1 1.9842 -5.9844 -3.6975 22 1 -0.3229 -5.2377 -3.6932 23 1 -0.3633 -0.0056 1.0277 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8928 -0.5090 26 1 1.9719 2.1210 -0.0004 27 1 5.6584 1.0776 0.0049 28 1 5.8780 3.9299 -2.1240 29 1 7.4434 4.2412 -1.3366 30 1 6.8574 2.5707 -1.5228 31 1 4.9412 5.2142 1.2421 32 1 6.3246 5.7847 0.2787 33 1 4.7590 5.4737 -0.5094 34 1 2.5849 -3.1072 0.4976 35 1 0.8916 -2.5584 0.5012 36 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271062915.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:47 Heat of formation + Delta-G solvation = -35.454636 kcal Electronic energy + Delta-G solvation = -20405.521502 eV Core-core repulsion = 17032.968267 eV Total energy + Delta-G solvation = -3372.553235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.02557 -42.37373 -40.75287 -36.51415 -35.36600 -34.72659 -33.03933 -32.64909 -28.79340 -28.38591 -27.91369 -25.88841 -24.49640 -22.10978 -21.38014 -20.61758 -18.86859 -18.69932 -17.86725 -17.22131 -17.13273 -16.45663 -16.22486 -16.10356 -15.89835 -15.32557 -14.80029 -14.35576 -14.23012 -13.85464 -13.68607 -13.63492 -13.38544 -13.31953 -13.17221 -13.08544 -13.02131 -12.80731 -12.70371 -12.27894 -12.14023 -12.04052 -11.59821 -11.40223 -10.91429 -10.74766 -9.65546 -9.22362 -8.34540 -6.52178 0.72979 1.19316 1.26560 1.36781 1.38944 1.51619 2.07584 2.15511 2.35214 2.95640 3.07461 3.37767 3.55263 3.71633 3.84725 4.09818 4.42288 4.60683 4.61930 4.69197 4.71173 4.75348 4.83463 4.91035 4.92243 4.98212 5.06586 5.09838 5.18121 5.22374 5.52197 5.78724 5.84208 6.09582 6.21929 6.59766 6.76775 6.97176 7.19092 8.72068 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.030540 B = 0.004120 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.622337 B = 6794.693820 C = 7108.445917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.089 3.911 3 C -0.298 4.298 4 C 0.267 3.733 5 N -0.618 5.618 6 C 0.501 3.499 7 O -0.524 6.524 8 C 0.117 3.883 9 C -0.173 4.173 10 C -0.156 4.156 11 F -0.199 7.199 12 N -0.356 5.356 13 N -0.340 5.340 14 C 0.274 3.726 15 C -0.553 4.553 16 H 0.050 0.950 17 C 0.023 3.977 18 N -0.918 5.918 19 Si 0.973 3.027 20 H -0.274 1.274 21 H -0.275 1.275 22 H -0.266 1.266 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.104 0.896 26 H 0.169 0.831 27 H 0.424 0.576 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.024 0.976 35 H 0.054 0.946 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.435 17.973 -0.269 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 C -0.329 4.329 4 C 0.013 3.987 5 N -0.267 5.267 6 C 0.286 3.714 7 O -0.398 6.398 8 C 0.095 3.905 9 C -0.230 4.230 10 C -0.214 4.214 11 F -0.180 7.180 12 N -0.187 5.187 13 N -0.123 5.123 14 C 0.155 3.845 15 C -0.592 4.592 16 H 0.068 0.932 17 C -0.178 4.178 18 N -0.556 5.556 19 Si 0.796 3.204 20 H -0.198 1.198 21 H -0.200 1.200 22 H -0.191 1.191 23 H 0.112 0.888 24 H 0.087 0.913 25 H 0.123 0.877 26 H 0.187 0.813 27 H 0.261 0.739 28 H 0.109 0.891 29 H 0.129 0.871 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.305 16.985 -0.185 18.490 hybrid contribution -0.015 -0.529 -0.461 0.702 sum 7.290 16.456 -0.646 18.010 Atomic orbital electron populations 1.20521 0.85119 1.04544 1.04204 1.21788 0.96790 0.86338 0.99195 1.21430 0.89689 1.00058 1.21697 1.19351 0.88709 0.89318 1.01311 1.42627 1.07263 1.05256 1.71535 1.21769 0.92493 0.81489 0.75602 1.90645 1.27398 1.73994 1.47741 1.21297 0.84613 0.95119 0.89466 1.22481 1.02809 1.05325 0.92402 1.22242 1.04251 0.90579 1.04305 1.92930 1.70385 1.91765 1.62903 1.77187 1.00253 1.09960 1.31264 1.48831 1.01656 1.07649 1.54122 1.19287 0.94965 0.72296 0.97928 1.21453 1.47621 0.98427 0.91656 0.93202 1.25735 0.93889 0.95844 1.02302 1.70003 1.45028 1.07444 1.33111 0.85289 0.78504 0.78081 0.78481 1.19818 1.20000 1.19132 0.88822 0.91307 0.87746 0.81350 0.73868 0.89120 0.87061 0.90726 0.91773 0.87564 0.89180 0.95759 0.92866 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.83 9.89 71.24 0.70 -2.12 16 2 C 0.09 3.77 6.92 41.38 0.29 4.06 16 3 C -0.30 -12.17 9.52 22.11 0.21 -11.96 16 4 C 0.27 11.03 8.11 133.32 1.08 12.11 16 5 N -0.62 -19.55 5.42 -307.50 -1.67 -21.22 16 6 C 0.50 14.05 6.76 87.66 0.59 14.64 16 7 O -0.52 -17.36 13.11 -3.06 -0.04 -17.40 16 8 C 0.12 2.20 1.54 -11.54 -0.02 2.18 16 9 C -0.17 -2.26 8.91 71.98 0.64 -1.62 16 10 C -0.16 -2.36 8.28 71.98 0.60 -1.76 16 11 F -0.20 -4.18 16.74 44.97 0.75 -3.43 16 12 N -0.36 -17.00 12.59 -54.44 -0.69 -17.68 16 13 N -0.34 -16.58 3.59 -338.43 -1.22 -17.80 16 14 C 0.27 14.54 5.81 85.63 0.50 15.04 16 15 C -0.55 -31.00 9.39 25.60 0.24 -30.76 16 16 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 17 C 0.02 1.28 5.46 84.66 0.46 1.74 16 18 N -0.92 -51.68 13.29 21.45 0.28 -51.40 16 19 Si 0.97 42.85 29.54 68.60 2.03 44.88 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 23 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 24 H 0.07 2.48 7.71 -2.39 -0.02 2.46 16 25 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 26 H 0.17 6.50 5.92 -2.91 -0.02 6.49 16 27 H 0.42 11.34 8.79 -92.71 -0.82 10.52 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 29 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.32 7.99 -2.38 -0.02 1.30 16 34 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 2.78 7.65 -2.39 -0.02 2.77 16 36 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -68.52 315.49 5.03 -63.49 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.28 Total: 19.01 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 5.29 Total: 1.55 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -3.28 Total: -108.10 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.04 Total: -17.40 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.75 Total: -3.43 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -68.52 5.03 -63.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271062915.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.035 kcal (2) G-P(sol) polarization free energy of solvation -68.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds