Wall clock time and date at job start Mon Mar 30 2020 01:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99897 * 2 1 4 4 H 1.48500 * 109.46928 * 274.54393 * 3 2 1 5 5 H 1.48501 * 109.47010 * 34.54443 * 3 2 1 6 6 H 1.48496 * 109.46822 * 154.54352 * 3 2 1 7 7 C 1.38806 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99695 * 163.91112 * 7 2 1 9 9 N 1.36937 * 120.00366 * 343.91074 * 7 2 1 10 10 C 1.47055 * 120.79761 * 155.40947 * 9 7 2 11 11 C 1.53418 * 109.08611 * 115.76088 * 10 9 7 12 12 C 1.50622 * 108.79934 * 45.10608 * 11 10 9 13 13 C 1.35037 * 124.86686 * 342.24719 * 12 11 10 14 14 N 1.33506 * 108.27436 * 180.66355 * 13 12 11 15 15 C 1.30773 * 109.20783 * 359.62951 * 14 13 12 16 16 N 1.36077 * 108.63499 * 0.02562 * 15 14 13 17 17 C 1.40241 * 126.54893 * 180.02562 * 16 15 14 18 18 C 1.38815 * 120.06374 * 310.02848 * 17 16 15 19 19 C 1.38127 * 119.93216 * 179.97438 * 18 17 16 20 20 C 1.38273 * 120.06649 * 0.02562 * 19 18 17 21 21 C 1.38275 * 120.13042 * 359.97438 * 20 19 18 22 22 C 1.38134 * 120.06220 * 359.97438 * 21 20 19 23 23 C 1.47551 * 120.99332 * 335.70278 * 9 7 2 24 24 H 0.96998 * 119.99815 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.53600 * 355.87953 * 10 9 7 26 26 H 1.08999 * 109.53303 * 235.64392 * 10 9 7 27 27 H 1.08997 * 109.58239 * 285.31205 * 11 10 9 28 28 H 1.09000 * 109.69307 * 164.96477 * 11 10 9 29 29 H 1.08000 * 125.68521 * 180.02562 * 15 14 13 30 30 H 1.08003 * 120.03328 * 0.25203 * 18 17 16 31 31 H 1.08000 * 119.96381 * 179.97438 * 19 18 17 32 32 H 1.07997 * 119.93391 * 179.97438 * 20 19 18 33 33 H 1.07992 * 119.96818 * 179.97438 * 21 20 19 34 34 H 1.07995 * 120.02828 * 179.97438 * 22 21 20 35 35 H 1.09001 * 110.42018 * 104.74119 * 23 9 7 36 36 H 1.08996 * 109.41254 * 343.60337 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4016 2.1019 -1.3957 5 1 1.4989 2.6230 0.7939 6 1 3.5924 1.4143 0.6018 7 6 2.0102 -1.2021 -0.0005 8 1 3.0586 -1.2203 -0.2598 9 7 1.3658 -2.3650 0.3276 10 6 1.8606 -3.6624 -0.1565 11 6 2.3041 -4.5095 1.0432 12 6 1.2551 -4.4132 2.1197 13 6 0.3036 -3.4573 2.1872 14 7 -0.4361 -3.6790 3.2762 15 6 0.0109 -4.7434 3.8906 16 7 1.0700 -5.2358 3.1924 17 6 1.8305 -6.3686 3.5171 18 6 2.3400 -6.5198 4.7995 19 6 3.0882 -7.6368 5.1165 20 6 3.3302 -8.6035 4.1579 21 6 2.8239 -8.4555 2.8797 22 6 2.0741 -7.3411 2.5571 23 6 0.1543 -2.3507 1.1698 24 1 -0.4850 0.8400 0.0004 25 1 2.7078 -3.5035 -0.8236 26 1 1.0646 -4.1788 -0.6930 27 1 3.2540 -4.1343 1.4241 28 1 2.4185 -5.5492 0.7365 29 1 -0.3931 -5.1619 4.8005 30 1 2.1479 -5.7671 5.5498 31 1 3.4852 -7.7548 6.1139 32 1 3.9158 -9.4758 4.4080 33 1 3.0149 -9.2119 2.1329 34 1 1.6793 -7.2259 1.5585 35 1 -0.7337 -2.5232 0.5616 36 1 0.0767 -1.3889 1.6766 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272506157.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:05 Heat of formation + Delta-G solvation = 102.572007 kcal Electronic energy + Delta-G solvation = -19982.485286 eV Core-core repulsion = 17046.686560 eV Total energy + Delta-G solvation = -2935.798726 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.37790 -40.01356 -38.02491 -35.20787 -34.37787 -32.13950 -31.52962 -30.57624 -30.02556 -27.22625 -24.77778 -24.32803 -23.82822 -22.89359 -21.47540 -20.15040 -18.99435 -18.36815 -17.32203 -16.87864 -16.65875 -15.99560 -15.79088 -15.43729 -15.26733 -14.94135 -14.54733 -14.44306 -14.34215 -13.92206 -13.57647 -13.21085 -12.99227 -12.77446 -12.66794 -12.33522 -12.29368 -12.13207 -11.99512 -11.80967 -11.19775 -10.81070 -10.61313 -10.01126 -9.60911 -9.03916 -8.83701 -7.89944 -5.33652 0.00652 0.33212 1.13628 1.46421 1.49305 1.58920 1.74944 2.12251 2.49934 2.70622 3.24910 3.47710 3.67663 3.81437 3.85843 3.91986 4.15109 4.22287 4.31053 4.40106 4.43242 4.52814 4.58673 4.76514 4.84137 4.99245 5.00534 5.06493 5.16425 5.26701 5.37939 5.45811 5.49409 5.54517 5.64556 5.79862 5.87833 6.30856 6.45717 7.01112 7.16552 7.77789 8.32411 9.19920 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031492 B = 0.004827 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.903315 B = 5799.502456 C = 6056.388051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.053 4.053 3 Si 0.972 3.028 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.264 4.264 8 H 0.079 0.921 9 N -0.609 5.609 10 C 0.146 3.854 11 C -0.045 4.045 12 C -0.012 4.012 13 C -0.037 4.037 14 N -0.519 5.519 15 C 0.178 3.822 16 N -0.412 5.412 17 C 0.096 3.904 18 C -0.127 4.127 19 C -0.100 4.100 20 C -0.111 4.111 21 C -0.100 4.100 22 C -0.129 4.129 23 C 0.272 3.728 24 H 0.251 0.749 25 H 0.080 0.920 26 H 0.028 0.972 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.243 0.757 30 H 0.131 0.869 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.123 0.877 35 H 0.008 0.992 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.286 -20.537 9.376 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.394 4.394 8 H 0.097 0.903 9 N -0.332 5.332 10 C 0.019 3.981 11 C -0.086 4.086 12 C -0.125 4.125 13 C -0.166 4.166 14 N -0.237 5.237 15 C -0.102 4.102 16 N -0.093 5.093 17 C 0.007 3.993 18 C -0.146 4.146 19 C -0.118 4.118 20 C -0.129 4.129 21 C -0.119 4.119 22 C -0.148 4.148 23 C 0.145 3.855 24 H 0.060 0.940 25 H 0.098 0.902 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.113 0.887 29 H 0.259 0.741 30 H 0.149 0.851 31 H 0.177 0.823 32 H 0.179 0.821 33 H 0.175 0.825 34 H 0.141 0.859 35 H 0.026 0.974 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.585 -19.976 9.617 23.432 hybrid contribution 0.250 1.008 -0.315 1.085 sum 7.835 -18.968 9.303 22.532 Atomic orbital electron populations 1.70201 1.06860 1.25995 1.55392 1.25852 0.96097 1.01756 1.01091 0.85197 0.78022 0.79245 0.77598 1.20608 1.22199 1.19327 1.19561 0.92984 0.85395 1.41447 0.90336 1.44385 1.30120 1.02582 1.56119 1.21069 0.97929 0.85612 0.93447 1.20655 0.94231 1.01247 0.92434 1.21115 1.02732 0.94577 0.94046 1.21710 0.96624 1.00677 0.97566 1.69876 1.29301 1.16368 1.08144 1.25893 0.89617 0.93682 1.00976 1.42903 1.25078 1.20789 1.20490 1.18113 0.97982 0.86836 0.96417 1.21284 0.98585 1.00225 0.94517 1.21422 0.96665 0.92331 1.01410 1.21707 0.98803 0.99887 0.92511 1.21410 0.95813 0.96520 0.98134 1.21270 1.00645 0.93904 0.99030 1.18605 0.87588 0.92305 0.86993 0.94030 0.90156 0.95388 0.91323 0.88718 0.74127 0.85120 0.82303 0.82070 0.82530 0.85949 0.97390 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.53 11.09 21.65 0.24 -58.29 16 2 C -0.05 -3.08 4.98 84.86 0.42 -2.65 16 3 Si 0.97 46.45 29.58 68.60 2.03 48.48 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.26 -15.07 9.64 84.03 0.81 -14.26 16 8 H 0.08 4.23 7.88 -2.91 -0.02 4.20 16 9 N -0.61 -32.81 2.98 -700.74 -2.09 -34.90 16 10 C 0.15 6.18 6.45 86.41 0.56 6.74 16 11 C -0.05 -1.64 6.04 29.96 0.18 -1.46 16 12 C -0.01 -0.48 6.60 41.08 0.27 -0.21 16 13 C -0.04 -1.81 7.07 41.68 0.29 -1.52 16 14 N -0.52 -23.47 11.24 -187.15 -2.10 -25.58 16 15 C 0.18 6.15 12.32 179.85 2.22 8.36 16 16 N -0.41 -13.83 2.87 -337.03 -0.97 -14.80 16 17 C 0.10 2.45 5.91 38.07 0.22 2.68 16 18 C -0.13 -2.52 9.69 22.38 0.22 -2.30 16 19 C -0.10 -1.34 10.04 22.25 0.22 -1.12 16 20 C -0.11 -1.27 10.04 22.29 0.22 -1.05 16 21 C -0.10 -1.44 10.04 22.25 0.22 -1.21 16 22 C -0.13 -2.77 8.82 22.38 0.20 -2.57 16 23 C 0.27 15.34 5.41 85.55 0.46 15.80 16 24 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 25 H 0.08 3.12 7.93 -2.39 -0.02 3.10 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.09 2.71 6.24 -2.39 -0.01 2.69 16 29 H 0.24 5.75 8.06 -2.91 -0.02 5.73 16 30 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 31 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 32 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 33 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.12 2.76 6.97 -2.91 -0.02 2.74 16 35 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.05 3.40 6.37 -2.39 -0.02 3.39 16 Total: -1.00 -75.84 300.57 4.72 -71.13 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.08 Total: 8.73 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 6.53 Total: 5.24 kcal Atomic # 7 Polarization: -128.65 SS G_CDS: -4.92 Total: -133.57 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -75.84 4.72 -71.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272506157.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.698 kcal (2) G-P(sol) polarization free energy of solvation -75.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds