Wall clock time and date at job start Mon Mar 30 2020 01:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00289 * 2 1 4 4 H 1.48493 * 109.47028 * 270.27890 * 3 2 1 5 5 H 1.48499 * 109.46939 * 30.27841 * 3 2 1 6 6 H 1.48493 * 109.46946 * 150.27712 * 3 2 1 7 7 C 1.37884 * 119.99490 * 180.27627 * 2 1 3 8 8 H 1.07995 * 119.99954 * 359.72655 * 7 2 1 9 9 C 1.50704 * 119.99585 * 179.72103 * 7 2 1 10 10 C 1.52995 * 109.46841 * 175.53569 * 9 7 2 11 11 H 1.09001 * 109.47427 * 305.29418 * 10 9 7 12 12 N 1.46501 * 109.47399 * 65.29767 * 10 9 7 13 13 C 1.39002 * 119.99811 * 205.81708 * 12 10 9 14 14 C 1.39333 * 120.09698 * 354.48260 * 13 12 10 15 15 N 1.31927 * 119.88573 * 179.73384 * 14 13 12 16 16 C 1.32269 * 120.08693 * 0.51683 * 15 14 13 17 17 C 1.38159 * 120.19433 * 359.75359 * 16 15 14 18 18 N 1.32248 * 120.10935 * 359.97438 * 17 16 15 19 19 C 1.50699 * 109.47266 * 185.29726 * 10 9 7 20 20 C 1.38234 * 119.99955 * 279.72858 * 19 10 9 21 21 C 1.38236 * 119.99956 * 179.78690 * 20 19 10 22 22 C 1.38229 * 120.00158 * 0.43718 * 21 20 19 23 23 C 1.38240 * 119.99849 * 359.81559 * 22 21 20 24 24 C 1.38234 * 120.00173 * 359.97438 * 23 22 21 25 25 H 0.97003 * 119.99783 * 359.71693 * 1 2 3 26 26 H 1.09005 * 109.47146 * 295.53606 * 9 7 2 27 27 H 1.08998 * 109.46890 * 55.53567 * 9 7 2 28 28 H 0.96994 * 119.99648 * 25.81625 * 12 10 9 29 29 H 1.08000 * 120.05721 * 359.97438 * 14 13 12 30 30 H 1.08002 * 119.90125 * 179.73068 * 16 15 14 31 31 H 1.08003 * 119.94568 * 179.97438 * 17 16 15 32 32 H 1.07999 * 120.00117 * 359.97438 * 20 19 10 33 33 H 1.08000 * 120.00008 * 180.27707 * 21 20 19 34 34 H 1.08003 * 120.00597 * 179.83556 * 22 21 20 35 35 H 1.07998 * 119.99709 * 180.02562 * 23 22 21 36 36 H 1.07997 * 120.00529 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4908 2.0497 -1.4000 5 1 1.4497 2.6509 0.7059 6 1 3.5496 1.4383 0.6941 7 6 2.0045 -1.1942 -0.0058 8 1 1.4644 -2.1294 -0.0058 9 6 3.5115 -1.1942 -0.0121 10 6 4.0219 -2.6325 0.0946 11 1 3.5869 -3.1082 0.9736 12 7 3.6354 -3.3782 -1.1058 13 6 3.4885 -4.7593 -1.0487 14 6 3.8187 -5.4495 0.1157 15 7 3.6726 -6.7597 0.1670 16 6 3.2233 -7.4186 -0.8882 17 6 2.9001 -6.7383 -2.0464 18 7 3.0384 -5.4244 -2.1046 19 6 5.5237 -2.6248 0.2192 20 6 6.3099 -2.4715 -0.9074 21 6 7.6874 -2.4600 -0.7925 22 6 8.2789 -2.6107 0.4477 23 6 7.4927 -2.7692 1.5737 24 6 6.1151 -2.7764 1.4595 25 1 -0.4850 0.8401 0.0042 26 1 3.8709 -0.7489 -0.9399 27 1 3.8784 -0.6146 0.8350 28 1 3.4820 -2.9081 -1.9402 29 1 4.1898 -4.9125 0.9760 30 1 3.1090 -8.4917 -0.8443 31 1 2.5339 -7.2804 -2.9057 32 1 5.8479 -2.3578 -1.8769 33 1 8.3016 -2.3358 -1.6721 34 1 9.3552 -2.6044 0.5372 35 1 7.9548 -2.8865 2.5428 36 1 5.5009 -2.8997 2.3391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301771307.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:50 Heat of formation + Delta-G solvation = 75.408683 kcal Electronic energy + Delta-G solvation = -19765.256527 eV Core-core repulsion = 16828.279911 eV Total energy + Delta-G solvation = -2936.976616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.65046 -39.22574 -36.41795 -33.89537 -32.89231 -31.72177 -30.74299 -29.71106 -28.70464 -25.30674 -24.21799 -22.94652 -22.28618 -21.83695 -20.10508 -17.54757 -17.23717 -16.97806 -16.40082 -16.19839 -15.12571 -14.92695 -14.53766 -14.45349 -14.09041 -13.76209 -13.30027 -13.17592 -12.79050 -12.57641 -12.44368 -11.92460 -11.40485 -11.35044 -11.15116 -11.07928 -10.86283 -10.53411 -10.40666 -10.00385 -9.72713 -9.35983 -8.76107 -8.72615 -8.67150 -8.46968 -7.46534 -6.15539 -4.16336 1.32287 1.52825 1.58105 1.67270 3.22017 3.30772 3.31952 3.43988 4.00049 4.17733 4.33475 4.71086 4.80564 4.90631 5.04285 5.06049 5.15076 5.17957 5.30211 5.48614 5.54817 5.65790 5.69302 5.79121 5.83106 6.07764 6.16760 6.24245 6.55829 6.61742 6.65202 6.78362 6.86841 6.94388 7.17128 7.29271 7.57669 7.86873 7.92545 8.36555 8.37335 8.89409 9.44355 10.97184 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012420 B = 0.007671 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.902320 B = 3649.306338 C = 5331.648609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.200 3.800 11 H 0.089 0.911 12 N -0.680 5.680 13 C 0.373 3.627 14 C -0.012 4.012 15 N -0.406 5.406 16 C -0.046 4.046 17 C 0.105 3.895 18 N -0.511 5.511 19 C -0.090 4.090 20 C -0.102 4.102 21 C -0.123 4.123 22 C -0.129 4.129 23 C -0.120 4.120 24 C -0.113 4.113 25 H 0.265 0.735 26 H 0.020 0.980 27 H 0.039 0.961 28 H 0.409 0.591 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.161 0.839 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.063 -8.358 -0.815 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.051 4.051 10 C 0.095 3.905 11 H 0.106 0.894 12 N -0.308 5.308 13 C 0.131 3.869 14 C -0.182 4.182 15 N -0.119 5.119 16 C -0.206 4.206 17 C -0.057 4.057 18 N -0.235 5.235 19 C -0.092 4.092 20 C -0.121 4.121 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.139 4.139 24 C -0.132 4.132 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.246 0.754 29 H 0.177 0.823 30 H 0.175 0.825 31 H 0.179 0.821 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.928 -8.122 -0.644 15.281 hybrid contribution 0.209 1.162 -0.415 1.251 sum 13.136 -6.961 -1.059 14.904 Atomic orbital electron populations 1.69905 1.06291 1.27035 1.50137 1.24988 0.94696 0.99018 0.94342 0.86852 0.80418 0.83863 0.78637 1.20233 1.21229 1.18880 1.20987 0.88546 0.94770 1.51864 0.90602 1.19882 0.97943 0.89386 0.97858 1.20116 0.87614 0.95526 0.87278 0.89361 1.44644 1.71062 1.01327 1.13751 1.19459 0.89662 0.87048 0.90685 1.23056 1.05948 0.90823 0.98363 1.68136 1.07376 1.07996 1.28429 1.23133 1.05262 1.01202 0.91051 1.23350 0.94238 0.89655 0.98440 1.67998 1.17571 1.09086 1.28830 1.20664 0.96854 0.98167 0.93474 1.20953 0.93360 0.99247 0.98514 1.21093 0.94849 1.00799 0.97409 1.21063 0.99408 1.01353 0.92941 1.21070 0.93781 1.00637 0.98366 1.21058 0.94844 1.00179 0.97104 0.92555 0.96162 0.94284 0.75427 0.82254 0.82507 0.82149 0.86343 0.86556 0.86626 0.86315 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.96 55.43 0.77 -25.94 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 20.66 27.56 -169.99 -4.68 15.98 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -5.95 6.41 56.52 0.36 -5.59 16 7 C -0.52 -13.83 9.40 -34.44 -0.32 -14.15 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.28 3.59 -27.88 -0.10 -0.38 16 10 C 0.20 3.58 1.80 -69.08 -0.12 3.45 16 11 H 0.09 1.61 6.55 -51.93 -0.34 1.27 16 12 N -0.68 -12.13 4.19 -54.94 -0.23 -12.36 16 13 C 0.37 6.62 7.64 -154.73 -1.18 5.43 16 14 C -0.01 -0.20 10.25 -17.10 -0.18 -0.37 16 15 N -0.41 -6.68 10.49 -12.88 -0.14 -6.82 16 16 C -0.05 -0.65 11.21 -17.39 -0.19 -0.84 16 17 C 0.10 1.47 11.21 -17.40 -0.20 1.27 16 18 N -0.51 -8.84 10.53 -12.24 -0.13 -8.97 16 19 C -0.09 -1.42 4.54 -104.62 -0.48 -1.89 16 20 C -0.10 -1.53 9.33 -39.58 -0.37 -1.90 16 21 C -0.12 -1.62 10.05 -39.59 -0.40 -2.02 16 22 C -0.13 -1.59 10.05 -39.58 -0.40 -1.98 16 23 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 24 C -0.11 -1.61 9.67 -39.58 -0.38 -1.99 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.43 7.79 -51.93 -0.40 0.03 16 27 H 0.04 0.85 6.88 -51.93 -0.36 0.49 16 28 H 0.41 7.41 8.74 -40.82 -0.36 7.05 16 29 H 0.16 2.55 6.17 -52.49 -0.32 2.22 16 30 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.16 1.62 8.06 -52.48 -0.42 1.20 16 32 H 0.12 1.74 7.71 -52.49 -0.40 1.33 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.58 8.04 -52.49 -0.42 1.16 16 LS Contribution 310.06 15.07 4.67 4.67 Total: -1.00 -30.87 310.06 -8.86 -39.73 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.32 Total: 9.10 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -4.81 Total: -15.38 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.28 Total: -54.10 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.68 Total: 15.98 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.87 -8.86 -39.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301771307.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.137 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds