Wall clock time and date at job start Mon Mar 30 2020 01:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00289 * 2 1 4 4 H 1.48493 * 109.47028 * 270.27890 * 3 2 1 5 5 H 1.48499 * 109.46939 * 30.27841 * 3 2 1 6 6 H 1.48493 * 109.46946 * 150.27712 * 3 2 1 7 7 C 1.37884 * 119.99490 * 180.27627 * 2 1 3 8 8 H 1.07995 * 119.99954 * 359.72655 * 7 2 1 9 9 C 1.50704 * 119.99585 * 179.72103 * 7 2 1 10 10 C 1.52995 * 109.46841 * 175.53569 * 9 7 2 11 11 H 1.09001 * 109.47427 * 305.29418 * 10 9 7 12 12 N 1.46501 * 109.47399 * 65.29767 * 10 9 7 13 13 C 1.39002 * 119.99811 * 205.81708 * 12 10 9 14 14 C 1.39333 * 120.09698 * 354.48260 * 13 12 10 15 15 N 1.31927 * 119.88573 * 179.73384 * 14 13 12 16 16 C 1.32269 * 120.08693 * 0.51683 * 15 14 13 17 17 C 1.38159 * 120.19433 * 359.75359 * 16 15 14 18 18 N 1.32248 * 120.10935 * 359.97438 * 17 16 15 19 19 C 1.50699 * 109.47266 * 185.29726 * 10 9 7 20 20 C 1.38234 * 119.99955 * 279.72858 * 19 10 9 21 21 C 1.38236 * 119.99956 * 179.78690 * 20 19 10 22 22 C 1.38229 * 120.00158 * 0.43718 * 21 20 19 23 23 C 1.38240 * 119.99849 * 359.81559 * 22 21 20 24 24 C 1.38234 * 120.00173 * 359.97438 * 23 22 21 25 25 H 0.97003 * 119.99783 * 359.71693 * 1 2 3 26 26 H 1.09005 * 109.47146 * 295.53606 * 9 7 2 27 27 H 1.08998 * 109.46890 * 55.53567 * 9 7 2 28 28 H 0.96994 * 119.99648 * 25.81625 * 12 10 9 29 29 H 1.08000 * 120.05721 * 359.97438 * 14 13 12 30 30 H 1.08002 * 119.90125 * 179.73068 * 16 15 14 31 31 H 1.08003 * 119.94568 * 179.97438 * 17 16 15 32 32 H 1.07999 * 120.00117 * 359.97438 * 20 19 10 33 33 H 1.08000 * 120.00008 * 180.27707 * 21 20 19 34 34 H 1.08003 * 120.00597 * 179.83556 * 22 21 20 35 35 H 1.07998 * 119.99709 * 180.02562 * 23 22 21 36 36 H 1.07997 * 120.00529 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4908 2.0497 -1.4000 5 1 1.4497 2.6509 0.7059 6 1 3.5496 1.4383 0.6941 7 6 2.0045 -1.1942 -0.0058 8 1 1.4644 -2.1294 -0.0058 9 6 3.5115 -1.1942 -0.0121 10 6 4.0219 -2.6325 0.0946 11 1 3.5869 -3.1082 0.9736 12 7 3.6354 -3.3782 -1.1058 13 6 3.4885 -4.7593 -1.0487 14 6 3.8187 -5.4495 0.1157 15 7 3.6726 -6.7597 0.1670 16 6 3.2233 -7.4186 -0.8882 17 6 2.9001 -6.7383 -2.0464 18 7 3.0384 -5.4244 -2.1046 19 6 5.5237 -2.6248 0.2192 20 6 6.3099 -2.4715 -0.9074 21 6 7.6874 -2.4600 -0.7925 22 6 8.2789 -2.6107 0.4477 23 6 7.4927 -2.7692 1.5737 24 6 6.1151 -2.7764 1.4595 25 1 -0.4850 0.8401 0.0042 26 1 3.8709 -0.7489 -0.9399 27 1 3.8784 -0.6146 0.8350 28 1 3.4820 -2.9081 -1.9402 29 1 4.1898 -4.9125 0.9760 30 1 3.1090 -8.4917 -0.8443 31 1 2.5339 -7.2804 -2.9057 32 1 5.8479 -2.3578 -1.8769 33 1 8.3016 -2.3358 -1.6721 34 1 9.3552 -2.6044 0.5372 35 1 7.9548 -2.8865 2.5428 36 1 5.5009 -2.8997 2.3391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301771307.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:50 Heat of formation + Delta-G solvation = 56.471220 kcal Electronic energy + Delta-G solvation = -19766.077717 eV Core-core repulsion = 16828.279911 eV Total energy + Delta-G solvation = -2937.797806 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.89023 -40.34294 -37.71885 -35.29438 -34.71043 -33.11694 -31.76795 -31.07848 -30.15484 -26.82035 -25.53663 -24.17602 -23.49405 -23.22654 -21.43432 -19.09034 -18.82237 -18.31667 -17.59334 -17.38966 -16.45689 -16.28973 -16.03197 -15.65965 -15.41444 -15.06575 -14.69520 -14.37231 -14.17111 -13.94876 -13.84873 -13.39625 -13.06571 -12.57031 -12.47165 -12.42506 -12.29542 -11.93565 -11.80901 -11.76297 -11.50410 -10.99241 -10.79955 -9.97692 -9.76766 -9.58385 -8.75521 -8.29890 -6.34655 0.12033 0.42063 0.47063 0.55381 1.35103 1.37003 1.47438 2.13743 2.33706 2.93148 2.96280 3.06265 3.55398 3.63358 3.68581 3.87286 3.99077 4.20447 4.26746 4.33688 4.38046 4.44823 4.54428 4.66990 4.71165 4.75953 5.04384 5.13863 5.17601 5.22049 5.46524 5.54384 5.63765 5.65254 5.69461 5.95952 6.16429 6.23123 6.53780 6.64876 6.73257 7.09643 7.29403 8.86599 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012420 B = 0.007671 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.902320 B = 3649.306338 C = 5331.648609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.243 1.243 7 C -0.519 4.519 8 H 0.032 0.968 9 C -0.007 4.007 10 C 0.213 3.787 11 H 0.075 0.925 12 N -0.687 5.687 13 C 0.354 3.646 14 C -0.029 4.029 15 N -0.422 5.422 16 C -0.038 4.038 17 C 0.105 3.895 18 N -0.535 5.535 19 C -0.105 4.105 20 C -0.118 4.118 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.125 4.125 25 H 0.265 0.735 26 H 0.026 0.974 27 H 0.042 0.958 28 H 0.403 0.597 29 H 0.160 0.840 30 H 0.199 0.801 31 H 0.203 0.797 32 H 0.112 0.888 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.828 -8.976 -0.891 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.188 4.188 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.557 4.557 8 H 0.050 0.950 9 C -0.044 4.044 10 C 0.107 3.893 11 H 0.093 0.907 12 N -0.315 5.315 13 C 0.114 3.886 14 C -0.197 4.197 15 N -0.136 5.136 16 C -0.199 4.199 17 C -0.056 4.056 18 N -0.259 5.259 19 C -0.107 4.107 20 C -0.136 4.136 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.144 4.144 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.239 0.761 29 H 0.177 0.823 30 H 0.216 0.784 31 H 0.220 0.780 32 H 0.130 0.870 33 H 0.156 0.844 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.726 -8.744 -0.699 18.007 hybrid contribution -0.685 1.123 -0.439 1.387 sum 15.041 -7.620 -1.138 16.900 Atomic orbital electron populations 1.70071 1.08354 1.28041 1.52500 1.25926 0.95456 1.03217 0.94218 0.85740 0.79669 0.78665 0.79080 1.19463 1.21296 1.16636 1.21222 0.91183 0.92955 1.50317 0.94972 1.19751 0.94420 0.92245 0.98009 1.19768 0.89501 0.93071 0.86916 0.90656 1.44551 1.71989 1.01676 1.13295 1.19557 0.90699 0.86944 0.91371 1.23038 1.07024 0.91319 0.98292 1.68171 1.08073 1.07695 1.29688 1.23864 1.02932 1.02994 0.90073 1.24102 0.92897 0.88646 0.99986 1.68018 1.17995 1.10845 1.29065 1.20418 0.95092 1.00509 0.94677 1.21028 0.94466 1.00153 0.97996 1.21389 0.94126 1.00087 0.98913 1.21479 1.01077 0.99504 0.92242 1.21420 0.92978 0.99417 0.99963 1.21249 0.96071 1.00405 0.96672 0.92588 0.95550 0.93963 0.76135 0.82270 0.78424 0.77996 0.86999 0.84358 0.83473 0.83543 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 2 C 0.01 0.51 5.47 84.66 0.46 0.97 16 3 Si 0.94 42.96 27.56 68.60 1.89 44.85 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.24 -10.13 6.41 99.48 0.64 -9.49 16 7 C -0.52 -28.51 9.40 25.60 0.24 -28.27 16 8 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 9 C -0.01 -0.28 3.59 29.85 0.11 -0.18 16 10 C 0.21 7.88 1.80 44.24 0.08 7.96 16 11 H 0.08 2.91 6.55 -2.39 -0.02 2.90 16 12 N -0.69 -25.65 4.19 -327.75 -1.37 -27.02 16 13 C 0.35 12.91 7.64 133.04 1.02 13.93 16 14 C -0.03 -1.00 10.25 84.94 0.87 -0.12 16 15 N -0.42 -13.58 10.49 -194.67 -2.04 -15.62 16 16 C -0.04 -0.96 11.21 84.61 0.95 -0.01 16 17 C 0.11 2.75 11.21 84.61 0.95 3.70 16 18 N -0.54 -18.49 10.53 -192.64 -2.03 -20.52 16 19 C -0.11 -3.30 4.54 -19.87 -0.09 -3.39 16 20 C -0.12 -3.45 9.33 22.27 0.21 -3.24 16 21 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16 22 C -0.13 -2.64 10.05 22.27 0.22 -2.41 16 23 C -0.12 -2.68 10.05 22.27 0.22 -2.45 16 24 C -0.13 -3.42 9.67 22.27 0.22 -3.21 16 25 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 26 H 0.03 1.12 7.79 -2.38 -0.02 1.10 16 27 H 0.04 1.82 6.88 -2.39 -0.02 1.80 16 28 H 0.40 15.42 8.74 -92.71 -0.81 14.61 16 29 H 0.16 5.32 6.17 -2.91 -0.02 5.30 16 30 H 0.20 3.30 8.06 -2.91 -0.02 3.27 16 31 H 0.20 3.40 8.06 -2.91 -0.02 3.37 16 32 H 0.11 3.31 7.71 -2.91 -0.02 3.29 16 33 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 34 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.13 3.25 8.04 -2.91 -0.02 3.23 16 Total: -1.00 -69.39 310.06 2.64 -66.75 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.22 Total: 29.65 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 5.68 Total: -19.54 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -5.14 Total: -121.71 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.89 Total: 44.85 kcal Total: -69.39 2.64 -66.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301771307.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.223 kcal (2) G-P(sol) polarization free energy of solvation -69.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds