Wall clock time and date at job start Mon Mar 30 2020 01:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99782 * 2 1 4 4 H 1.48503 * 109.47105 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46961 * 299.99483 * 3 2 1 6 6 H 1.48493 * 109.47753 * 59.99688 * 3 2 1 7 7 C 1.37878 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00465 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99420 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46889 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47328 * 304.99721 * 10 9 7 12 12 N 1.46499 * 109.46941 * 65.00081 * 10 9 7 13 13 C 1.38406 * 119.99678 * 205.00015 * 12 10 9 14 14 N 1.32492 * 119.22195 * 359.72948 * 13 12 10 15 15 C 1.32274 * 120.74268 * 179.72041 * 14 13 12 16 16 C 1.38598 * 119.19672 * 0.54132 * 15 14 13 17 17 C 1.38607 * 118.56211 * 359.73387 * 16 15 14 18 18 N 1.32275 * 119.19140 * 359.97438 * 17 16 15 19 19 C 1.50706 * 109.47045 * 184.99671 * 10 9 7 20 20 C 1.38233 * 120.00109 * 279.72653 * 19 10 9 21 21 C 1.38237 * 119.99743 * 179.80918 * 20 19 10 22 22 C 1.38233 * 120.00125 * 0.40204 * 21 20 19 23 23 C 1.38238 * 120.00012 * 359.85160 * 22 21 20 24 24 C 1.38235 * 120.00123 * 359.95693 * 23 22 21 25 25 H 0.97002 * 119.99858 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47542 * 59.99787 * 9 7 2 27 27 H 1.09000 * 109.47272 * 299.99294 * 9 7 2 28 28 H 0.97000 * 119.99950 * 25.00225 * 12 10 9 29 29 H 1.08001 * 120.39893 * 180.29894 * 15 14 13 30 30 H 1.08008 * 120.72447 * 179.71126 * 16 15 14 31 31 H 1.07997 * 120.40658 * 180.02562 * 17 16 15 32 32 H 1.08004 * 119.99934 * 0.02562 * 20 19 10 33 33 H 1.07999 * 119.99896 * 180.23009 * 21 20 19 34 34 H 1.08002 * 120.00311 * 179.83689 * 22 21 20 35 35 H 1.08000 * 120.00524 * 179.97438 * 23 22 21 36 36 H 1.07999 * 120.00181 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9295 -3.5552 -0.8413 12 7 3.0064 -3.6538 1.2524 13 6 4.2641 -4.2295 1.3014 14 7 4.7626 -4.7884 0.2085 15 6 5.9637 -5.3424 0.2200 16 6 6.6967 -5.3431 1.3963 17 6 6.1430 -4.7547 2.5225 18 7 4.9390 -4.2130 2.4415 19 6 1.4960 -4.9637 -0.1232 20 6 0.8992 -5.5261 0.9896 21 6 0.2085 -6.7181 0.8752 22 6 0.1216 -7.3517 -0.3503 23 6 0.7229 -6.7919 -1.4621 24 6 1.4102 -5.5980 -1.3485 25 1 -0.4850 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 2.6288 -3.2449 2.0468 29 1 6.3667 -5.7922 -0.6754 30 1 7.6781 -5.7926 1.4347 31 1 6.6882 -4.7380 3.4546 32 1 0.9697 -5.0326 1.9476 33 1 -0.2609 -7.1557 1.7438 34 1 -0.4158 -8.2843 -0.4391 35 1 0.6554 -7.2871 -2.4194 36 1 1.8803 -5.1608 -2.2170 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301804140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:54 Heat of formation + Delta-G solvation = 75.925013 kcal Electronic energy + Delta-G solvation = -19719.618240 eV Core-core repulsion = 16782.664014 eV Total energy + Delta-G solvation = -2936.954226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.50504 -38.95571 -36.06318 -33.25500 -33.06778 -31.79639 -30.50754 -29.62480 -28.45619 -25.02783 -24.10706 -22.80237 -22.14873 -21.91704 -19.93151 -17.75158 -17.13324 -16.54802 -16.12546 -15.40123 -14.95486 -14.71435 -14.57464 -14.44770 -14.07946 -13.49850 -13.09179 -13.06240 -12.86413 -12.54540 -12.10449 -11.50577 -11.13252 -10.98242 -10.77566 -10.71995 -10.63159 -10.47626 -10.41026 -10.08171 -9.65426 -9.20961 -8.71150 -8.51980 -8.45095 -8.18536 -7.57041 -6.07975 -4.11034 1.53140 1.58148 1.79002 1.81572 3.27553 3.35724 3.40622 3.46597 4.23854 4.31270 4.41574 4.57467 4.90383 5.19768 5.27301 5.28828 5.31012 5.38515 5.48454 5.54187 5.56627 5.92709 5.94917 6.04265 6.17874 6.36417 6.42104 6.58166 6.61037 6.85841 6.86512 7.07554 7.22414 7.40949 7.46168 7.52967 7.73182 7.89203 8.05579 8.26681 8.81487 8.94734 9.54001 11.02642 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.007513 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.111767 B = 3725.890864 C = 5470.899900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.022 3.978 10 C 0.198 3.802 11 H 0.091 0.909 12 N -0.663 5.663 13 C 0.572 3.428 14 N -0.563 5.563 15 C 0.191 3.809 16 C -0.316 4.316 17 C 0.190 3.810 18 N -0.579 5.579 19 C -0.070 4.070 20 C -0.107 4.107 21 C -0.126 4.126 22 C -0.135 4.135 23 C -0.124 4.124 24 C -0.105 4.105 25 H 0.261 0.739 26 H 0.037 0.963 27 H 0.025 0.975 28 H 0.414 0.586 29 H 0.159 0.841 30 H 0.134 0.866 31 H 0.158 0.842 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.328 -13.430 1.187 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.093 3.907 11 H 0.109 0.891 12 N -0.294 5.294 13 C 0.215 3.785 14 N -0.287 5.287 15 C 0.022 3.978 16 C -0.343 4.343 17 C 0.021 3.979 18 N -0.302 5.302 19 C -0.072 4.072 20 C -0.125 4.125 21 C -0.144 4.144 22 C -0.153 4.153 23 C -0.142 4.142 24 C -0.124 4.124 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.252 0.748 29 H 0.176 0.824 30 H 0.152 0.848 31 H 0.176 0.824 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.072 -12.842 0.972 14.239 hybrid contribution 1.161 0.702 0.374 1.407 sum 7.233 -12.140 1.346 14.196 Atomic orbital electron populations 1.69968 1.05995 1.26691 1.50440 1.24981 0.94801 0.99236 0.95130 0.86536 0.80138 0.83751 0.77610 1.19825 1.20964 1.20986 1.21153 0.93070 0.90375 1.51031 0.92435 1.19423 0.93256 0.90199 0.98662 1.20291 0.93056 0.91827 0.85526 0.89122 1.44457 1.12261 1.58107 1.14622 1.19491 0.87529 0.86890 0.84559 1.67989 1.14843 1.16395 1.29431 1.22841 0.88096 0.89680 0.97211 1.22338 1.04113 1.11508 0.96319 1.22781 0.89350 0.87802 0.97937 1.67932 1.10041 1.25009 1.27198 1.20587 0.96729 0.96574 0.93275 1.20936 0.97429 0.95590 0.98589 1.21039 0.99914 0.96057 0.97360 1.20987 1.01105 1.00019 0.93234 1.21033 0.98715 0.96293 0.98190 1.20990 0.99093 0.94963 0.97355 0.92921 0.94499 0.95714 0.74768 0.82429 0.84768 0.82432 0.86658 0.86839 0.86917 0.86660 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.02 8.84 -34.44 -0.30 -14.33 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.54 4.50 -27.88 -0.13 0.41 16 10 C 0.20 4.05 2.11 -69.08 -0.15 3.90 16 11 H 0.09 1.96 7.37 -51.93 -0.38 1.58 16 12 N -0.66 -12.99 4.16 -56.92 -0.24 -13.23 16 13 C 0.57 10.78 8.40 -322.80 -2.71 8.07 16 14 N -0.56 -9.99 9.21 -13.93 -0.13 -10.12 16 15 C 0.19 2.64 11.30 -17.23 -0.19 2.45 16 16 C -0.32 -3.83 10.16 -39.31 -0.40 -4.23 16 17 C 0.19 2.58 11.30 -17.22 -0.19 2.39 16 18 N -0.58 -10.09 10.46 -13.93 -0.15 -10.24 16 19 C -0.07 -1.30 4.93 -104.62 -0.52 -1.82 16 20 C -0.11 -1.87 9.33 -39.58 -0.37 -2.24 16 21 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 22 C -0.14 -1.93 10.05 -39.58 -0.40 -2.33 16 23 C -0.12 -1.84 10.05 -39.58 -0.40 -2.23 16 24 C -0.11 -1.78 9.67 -39.58 -0.38 -2.17 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.41 8.14 8.72 -40.82 -0.36 7.78 16 29 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 31 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.12 1.99 7.71 -52.48 -0.40 1.58 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.12 1.92 8.04 -52.49 -0.42 1.50 16 LS Contribution 316.61 15.07 4.77 4.77 Total: -1.00 -31.05 316.61 -11.15 -42.19 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -4.49 Total: 8.21 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -6.63 Total: -12.87 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.23 Total: -58.83 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.05 -11.15 -42.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301804140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.117 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds