Wall clock time and date at job start Mon Mar 30 2020 01:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99782 * 2 1 4 4 H 1.48503 * 109.47105 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46961 * 299.99483 * 3 2 1 6 6 H 1.48493 * 109.47753 * 59.99688 * 3 2 1 7 7 C 1.37878 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00465 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99420 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46889 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47328 * 304.99721 * 10 9 7 12 12 N 1.46499 * 109.46941 * 65.00081 * 10 9 7 13 13 C 1.38406 * 119.99678 * 205.00015 * 12 10 9 14 14 N 1.32492 * 119.22195 * 359.72948 * 13 12 10 15 15 C 1.32274 * 120.74268 * 179.72041 * 14 13 12 16 16 C 1.38598 * 119.19672 * 0.54132 * 15 14 13 17 17 C 1.38607 * 118.56211 * 359.73387 * 16 15 14 18 18 N 1.32275 * 119.19140 * 359.97438 * 17 16 15 19 19 C 1.50706 * 109.47045 * 184.99671 * 10 9 7 20 20 C 1.38233 * 120.00109 * 279.72653 * 19 10 9 21 21 C 1.38237 * 119.99743 * 179.80918 * 20 19 10 22 22 C 1.38233 * 120.00125 * 0.40204 * 21 20 19 23 23 C 1.38238 * 120.00012 * 359.85160 * 22 21 20 24 24 C 1.38235 * 120.00123 * 359.95693 * 23 22 21 25 25 H 0.97002 * 119.99858 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47542 * 59.99787 * 9 7 2 27 27 H 1.09000 * 109.47272 * 299.99294 * 9 7 2 28 28 H 0.97000 * 119.99950 * 25.00225 * 12 10 9 29 29 H 1.08001 * 120.39893 * 180.29894 * 15 14 13 30 30 H 1.08008 * 120.72447 * 179.71126 * 16 15 14 31 31 H 1.07997 * 120.40658 * 180.02562 * 17 16 15 32 32 H 1.08004 * 119.99934 * 0.02562 * 20 19 10 33 33 H 1.07999 * 119.99896 * 180.23009 * 21 20 19 34 34 H 1.08002 * 120.00311 * 179.83689 * 22 21 20 35 35 H 1.08000 * 120.00524 * 179.97438 * 23 22 21 36 36 H 1.07999 * 120.00181 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9295 -3.5552 -0.8413 12 7 3.0064 -3.6538 1.2524 13 6 4.2641 -4.2295 1.3014 14 7 4.7626 -4.7884 0.2085 15 6 5.9637 -5.3424 0.2200 16 6 6.6967 -5.3431 1.3963 17 6 6.1430 -4.7547 2.5225 18 7 4.9390 -4.2130 2.4415 19 6 1.4960 -4.9637 -0.1232 20 6 0.8992 -5.5261 0.9896 21 6 0.2085 -6.7181 0.8752 22 6 0.1216 -7.3517 -0.3503 23 6 0.7229 -6.7919 -1.4621 24 6 1.4102 -5.5980 -1.3485 25 1 -0.4850 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 2.6288 -3.2449 2.0468 29 1 6.3667 -5.7922 -0.6754 30 1 7.6781 -5.7926 1.4347 31 1 6.6882 -4.7380 3.4546 32 1 0.9697 -5.0326 1.9476 33 1 -0.2609 -7.1557 1.7438 34 1 -0.4158 -8.2843 -0.4391 35 1 0.6554 -7.2871 -2.4194 36 1 1.8803 -5.1608 -2.2170 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301804140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:53 Heat of formation + Delta-G solvation = 59.870591 kcal Electronic energy + Delta-G solvation = -19720.314412 eV Core-core repulsion = 16782.664014 eV Total energy + Delta-G solvation = -2937.650398 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.71972 -40.24433 -37.50589 -35.01259 -34.44612 -33.25909 -31.73717 -30.91845 -30.16854 -26.74533 -25.32737 -24.06975 -23.72983 -23.23583 -21.38007 -19.05932 -18.66755 -18.19086 -17.53387 -16.63391 -16.43190 -16.24908 -15.99168 -15.69315 -15.30750 -14.92262 -14.54673 -14.19878 -14.16765 -14.12840 -13.64980 -13.39801 -12.96570 -12.65681 -12.51410 -12.21917 -11.91508 -11.76313 -11.71058 -11.61081 -11.48088 -11.01780 -10.62620 -9.91210 -9.74926 -9.51947 -8.88746 -8.23273 -6.33075 0.42013 0.43393 0.53470 0.57219 1.34909 1.36377 1.48428 2.11462 2.36890 2.98474 3.10328 3.12199 3.47151 3.88535 4.00055 4.04144 4.07808 4.21924 4.33071 4.47256 4.53063 4.60300 4.67018 4.77058 4.81236 4.99753 5.14896 5.20803 5.33540 5.40938 5.58426 5.62340 5.65088 5.73849 5.81713 6.08606 6.15489 6.20581 6.30959 6.70675 6.79357 7.35341 7.54096 8.87813 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.007513 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.111767 B = 3725.890864 C = 5470.899900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.049 0.951 9 C 0.035 3.965 10 C 0.221 3.779 11 H 0.072 0.928 12 N -0.675 5.675 13 C 0.551 3.449 14 N -0.591 5.591 15 C 0.174 3.826 16 C -0.291 4.291 17 C 0.176 3.824 18 N -0.604 5.604 19 C -0.092 4.092 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.121 4.121 24 C -0.122 4.122 25 H 0.264 0.736 26 H 0.010 0.990 27 H 0.003 0.997 28 H 0.408 0.592 29 H 0.192 0.808 30 H 0.179 0.821 31 H 0.196 0.804 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.013 -15.266 1.124 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.564 4.564 8 H 0.067 0.933 9 C -0.003 4.003 10 C 0.115 3.885 11 H 0.090 0.910 12 N -0.308 5.308 13 C 0.194 3.806 14 N -0.315 5.315 15 C 0.007 3.993 16 C -0.317 4.317 17 C 0.009 3.991 18 N -0.328 5.328 19 C -0.094 4.094 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.141 4.141 25 H 0.073 0.927 26 H 0.028 0.972 27 H 0.021 0.979 28 H 0.244 0.756 29 H 0.209 0.791 30 H 0.197 0.803 31 H 0.213 0.787 32 H 0.123 0.877 33 H 0.156 0.844 34 H 0.168 0.832 35 H 0.165 0.835 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.820 -14.712 0.907 16.686 hybrid contribution 0.753 1.145 0.412 1.430 sum 8.573 -13.567 1.319 16.103 Atomic orbital electron populations 1.70077 1.07409 1.27682 1.51451 1.25791 0.95626 1.02705 0.94821 0.85512 0.78671 0.79573 0.77938 1.19734 1.20132 1.20277 1.21386 0.92772 0.91739 1.50508 0.93284 1.19164 0.93443 0.91460 0.96195 1.19700 0.91728 0.91515 0.85523 0.91032 1.44231 1.13268 1.59623 1.13696 1.19546 0.87416 0.88036 0.85603 1.67978 1.16836 1.17273 1.29417 1.23574 0.87133 0.89188 0.99409 1.22812 1.05163 1.08963 0.94732 1.23559 0.88321 0.87040 1.00169 1.67926 1.11780 1.26213 1.26900 1.20464 0.98007 0.96302 0.94595 1.20997 0.98593 0.96898 0.97938 1.21370 0.99130 0.95087 0.99052 1.21440 1.00076 1.00886 0.92292 1.21407 0.97319 0.95193 0.99950 1.21155 1.00051 0.96197 0.96702 0.92672 0.97179 0.97858 0.75606 0.79073 0.80311 0.78702 0.87683 0.84353 0.83199 0.83466 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.53 -29.83 8.84 25.60 0.23 -29.61 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.03 1.82 4.50 29.85 0.13 1.96 16 10 C 0.22 9.66 2.11 44.25 0.09 9.75 16 11 H 0.07 3.33 7.37 -2.39 -0.02 3.31 16 12 N -0.68 -28.19 4.16 -334.00 -1.39 -29.58 16 13 C 0.55 21.33 8.40 261.49 2.20 23.53 16 14 N -0.59 -21.08 9.21 -197.99 -1.82 -22.90 16 15 C 0.17 4.48 11.30 84.71 0.96 5.43 16 16 C -0.29 -6.09 10.16 22.44 0.23 -5.86 16 17 C 0.18 4.39 11.30 84.71 0.96 5.35 16 18 N -0.60 -21.09 10.46 -197.99 -2.07 -23.16 16 19 C -0.09 -3.57 4.93 -19.86 -0.10 -3.67 16 20 C -0.13 -4.54 9.33 22.27 0.21 -4.33 16 21 C -0.13 -3.78 10.05 22.27 0.22 -3.55 16 22 C -0.13 -3.35 10.05 22.27 0.22 -3.12 16 23 C -0.12 -3.34 10.05 22.27 0.22 -3.12 16 24 C -0.12 -4.20 9.67 22.27 0.22 -3.98 16 25 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.41 17.36 8.72 -92.71 -0.81 16.55 16 29 H 0.19 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.20 3.18 8.06 -2.91 -0.02 3.15 16 32 H 0.11 3.88 7.71 -2.91 -0.02 3.86 16 33 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 34 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.12 3.98 8.04 -2.91 -0.02 3.95 16 Total: -1.00 -70.53 316.61 3.55 -66.98 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.28 Total: 27.12 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 6.25 Total: -10.24 kcal Atomic # 7 Polarization: -126.03 SS G_CDS: -5.00 Total: -131.03 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -70.53 3.55 -66.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301804140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.849 kcal (2) G-P(sol) polarization free energy of solvation -70.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds