Wall clock time and date at job start Mon Mar 30 2020 01:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99977 * 2 1 4 4 H 1.48505 * 109.47262 * 239.99652 * 3 2 1 5 5 H 1.48500 * 109.47415 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47408 * 119.99720 * 3 2 1 7 7 C 1.37880 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99505 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00149 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46768 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47165 * 55.00602 * 10 9 7 12 12 N 1.46497 * 109.47593 * 294.99865 * 10 9 7 13 13 C 1.38403 * 120.00131 * 155.00078 * 12 10 9 14 14 N 1.32488 * 119.21729 * 359.73398 * 13 12 10 15 15 C 1.32281 * 120.73759 * 179.71936 * 14 13 12 16 16 C 1.38603 * 119.19953 * 0.54137 * 15 14 13 17 17 C 1.38602 * 118.55508 * 359.73414 * 16 15 14 18 18 N 1.32272 * 119.20165 * 0.02562 * 17 16 15 19 19 C 1.50706 * 109.47046 * 174.99935 * 10 9 7 20 20 C 1.38234 * 120.00196 * 260.00428 * 19 10 9 21 21 C 1.38235 * 119.99814 * 179.97438 * 20 19 10 22 22 C 1.38230 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38243 * 120.00092 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99618 * 359.97438 * 23 22 21 25 25 H 0.96996 * 119.99830 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47170 * 59.99848 * 9 7 2 27 27 H 1.08993 * 109.47128 * 299.99985 * 9 7 2 28 28 H 0.97006 * 119.99969 * 335.00641 * 12 10 9 29 29 H 1.08002 * 120.40150 * 180.29957 * 15 14 13 30 30 H 1.07996 * 120.71871 * 179.75019 * 16 15 14 31 31 H 1.08003 * 120.39732 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.99516 * 0.24808 * 20 19 10 33 33 H 1.08000 * 119.99297 * 179.97438 * 21 20 19 34 34 H 1.08001 * 120.00350 * 179.97438 * 22 21 20 35 35 H 1.07999 * 120.00235 * 179.97438 * 23 22 21 36 36 H 1.08005 * 119.99804 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 7 3.0063 -3.6540 -1.2512 13 6 4.2640 -4.2297 -1.3002 14 7 4.7668 -4.7791 -0.2045 15 6 5.9636 -5.3426 -0.2188 16 6 6.6966 -5.3434 -1.3951 17 6 6.1428 -4.7550 -2.5213 18 7 4.9389 -4.2131 -2.4403 19 6 1.4959 -4.9637 0.1244 20 6 1.4100 -5.5980 1.3496 21 6 0.7222 -6.7917 1.4632 22 6 0.1197 -7.3508 0.3518 23 6 0.2047 -6.7160 -0.8733 24 6 0.8916 -5.5218 -0.9867 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 2.6288 -3.2451 -2.0457 29 1 6.3662 -5.7931 0.6764 30 1 7.6778 -5.7929 -1.4334 31 1 6.6877 -4.7392 -3.4536 32 1 1.8766 -5.1587 2.2189 33 1 0.6555 -7.2874 2.4204 34 1 -0.4173 -8.2836 0.4405 35 1 -0.2656 -7.1530 -1.7417 36 1 0.9583 -5.0260 -1.9439 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301804142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:55 Heat of formation + Delta-G solvation = 59.990035 kcal Electronic energy + Delta-G solvation = -19718.994603 eV Core-core repulsion = 16781.349384 eV Total energy + Delta-G solvation = -2937.645219 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.71954 -40.24499 -37.50549 -35.00975 -34.44579 -33.25990 -31.73768 -30.91787 -30.16669 -26.74187 -25.32685 -24.06837 -23.73003 -23.23536 -21.37969 -19.05774 -18.66347 -18.18778 -17.53067 -16.63771 -16.42936 -16.25460 -15.98957 -15.69035 -15.31007 -14.92473 -14.53470 -14.19632 -14.16803 -14.12758 -13.64548 -13.39783 -12.96892 -12.65153 -12.50087 -12.22443 -11.91337 -11.76046 -11.70796 -11.61492 -11.49851 -11.02434 -10.61789 -9.91208 -9.74986 -9.51973 -8.88700 -8.22806 -6.32801 0.41991 0.43411 0.53373 0.57181 1.36289 1.37671 1.46007 2.11489 2.37119 2.98426 3.10586 3.12228 3.47182 3.88572 4.00093 4.04133 4.07709 4.21941 4.33038 4.47303 4.53053 4.60374 4.67162 4.77001 4.81291 4.99789 5.14868 5.20784 5.33509 5.40798 5.58473 5.62294 5.65057 5.73754 5.81736 6.08628 6.15567 6.20561 6.30907 6.70674 6.79099 7.35411 7.54092 8.87868 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.007516 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.864865 B = 3724.417724 C = 5470.736170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.528 4.528 8 H 0.049 0.951 9 C 0.036 3.964 10 C 0.221 3.779 11 H 0.072 0.928 12 N -0.675 5.675 13 C 0.551 3.449 14 N -0.591 5.591 15 C 0.174 3.826 16 C -0.291 4.291 17 C 0.176 3.824 18 N -0.604 5.604 19 C -0.092 4.092 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.126 4.126 25 H 0.264 0.736 26 H 0.003 0.997 27 H 0.010 0.990 28 H 0.407 0.593 29 H 0.193 0.807 30 H 0.179 0.821 31 H 0.196 0.804 32 H 0.121 0.879 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.139 0.861 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.014 -15.286 -1.118 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.566 4.566 8 H 0.067 0.933 9 C -0.002 4.002 10 C 0.115 3.885 11 H 0.090 0.910 12 N -0.308 5.308 13 C 0.194 3.806 14 N -0.315 5.315 15 C 0.007 3.993 16 C -0.317 4.317 17 C 0.009 3.991 18 N -0.328 5.328 19 C -0.094 4.094 20 C -0.141 4.141 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.146 4.146 24 C -0.144 4.144 25 H 0.073 0.927 26 H 0.021 0.979 27 H 0.028 0.972 28 H 0.244 0.756 29 H 0.209 0.791 30 H 0.197 0.803 31 H 0.213 0.787 32 H 0.139 0.861 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.157 0.843 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.820 -14.716 -0.897 16.689 hybrid contribution 0.763 1.137 -0.418 1.431 sum 8.583 -13.579 -1.315 16.118 Atomic orbital electron populations 1.70064 1.07410 1.27817 1.51275 1.25790 0.95629 1.02685 0.94789 0.85636 0.78401 0.78990 0.78810 1.19856 1.20471 1.19600 1.21337 0.92775 0.91761 1.50766 0.93269 1.19152 0.93429 0.91437 0.96173 1.19700 0.91739 0.91506 0.85532 0.91007 1.44233 1.13286 1.59610 1.13694 1.19545 0.87395 0.88079 0.85577 1.67981 1.16886 1.17312 1.29320 1.23578 0.87197 0.89102 0.99420 1.22809 1.05103 1.08997 0.94747 1.23556 0.88335 0.87041 1.00161 1.67930 1.11798 1.26133 1.26967 1.20465 0.97980 0.96327 0.94619 1.21154 1.00066 0.96208 0.96681 1.21405 0.97294 0.95212 0.99958 1.21441 1.00057 1.00896 0.92290 1.21372 0.99180 0.95032 0.99053 1.21000 0.98555 0.96903 0.97966 0.92663 0.97888 0.97193 0.75619 0.79069 0.80311 0.78714 0.86147 0.83463 0.83194 0.84347 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 2 C 0.01 0.56 5.46 84.65 0.46 1.02 16 3 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.53 -29.97 8.84 25.60 0.23 -29.75 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 9 C 0.04 1.86 4.49 29.85 0.13 2.00 16 10 C 0.22 9.65 2.11 44.25 0.09 9.75 16 11 H 0.07 3.34 7.36 -2.39 -0.02 3.32 16 12 N -0.68 -28.20 4.18 -334.02 -1.40 -29.60 16 13 C 0.55 21.32 8.40 261.49 2.20 23.52 16 14 N -0.59 -21.06 9.20 -197.98 -1.82 -22.88 16 15 C 0.17 4.47 11.30 84.71 0.96 5.43 16 16 C -0.29 -6.08 10.16 22.44 0.23 -5.85 16 17 C 0.18 4.39 11.30 84.71 0.96 5.35 16 18 N -0.60 -21.09 10.46 -197.99 -2.07 -23.16 16 19 C -0.09 -3.58 4.93 -19.86 -0.10 -3.68 16 20 C -0.12 -4.20 9.67 22.27 0.22 -3.98 16 21 C -0.12 -3.34 10.05 22.27 0.22 -3.12 16 22 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 23 C -0.13 -3.78 10.05 22.27 0.22 -3.55 16 24 C -0.13 -4.54 9.32 22.27 0.21 -4.33 16 25 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 26 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 27 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.41 17.38 8.72 -92.70 -0.81 16.58 16 29 H 0.19 3.37 8.06 -2.91 -0.02 3.35 16 30 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.20 3.18 8.06 -2.91 -0.02 3.15 16 32 H 0.12 3.98 8.04 -2.91 -0.02 3.95 16 33 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 34 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 36 H 0.11 3.88 7.72 -2.91 -0.02 3.86 16 Total: -1.00 -70.43 316.62 3.55 -66.88 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.28 Total: 27.38 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 6.25 Total: -10.32 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -5.00 Total: -131.05 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -70.43 3.55 -66.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301804142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.866 kcal (2) G-P(sol) polarization free energy of solvation -70.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds