Wall clock time and date at job start Mon Mar 30 2020 01:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86797 * 120.00624 * 2 1 4 4 H 1.48494 * 109.47486 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46526 * 300.00079 * 3 2 1 6 6 H 1.48494 * 109.47262 * 59.99458 * 3 2 1 7 7 C 1.39937 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99664 * 197.74811 * 7 2 1 9 9 C 1.41400 * 119.99979 * 17.74420 * 7 2 1 10 10 C 1.40787 * 120.20955 * 204.33150 * 9 7 2 11 11 C 1.37648 * 119.89706 * 180.02562 * 10 9 7 12 12 C 1.38516 * 120.32449 * 0.02761 * 11 10 9 13 13 C 1.39299 * 120.42658 * 359.95325 * 12 11 10 14 14 N 1.39677 * 119.95566 * 180.02562 * 13 12 11 15 15 C 1.46505 * 120.00136 * 359.97438 * 14 13 12 16 16 H 1.08993 * 110.52521 * 32.41423 * 15 14 13 17 17 C 1.54527 * 110.47641 * 155.00154 * 15 14 13 18 18 C 1.54393 * 101.77159 * 93.53323 * 17 15 14 19 19 N 1.47006 * 105.53147 * 25.71344 * 18 17 15 20 20 C 1.37193 * 141.60057 * 162.95812 * 19 18 17 21 21 C 1.34558 * 106.83475 * 179.81371 * 20 19 18 22 22 N 1.34005 * 108.03374 * 0.03998 * 21 20 19 23 23 C 1.30907 * 109.30090 * 0.05750 * 22 21 20 24 24 C 1.38323 * 120.09160 * 0.29420 * 13 12 11 25 25 H 0.97008 * 119.99432 * 0.02562 * 1 2 3 26 26 H 1.08007 * 120.04980 * 359.97438 * 10 9 7 27 27 H 1.07995 * 119.83475 * 179.97438 * 11 10 9 28 28 H 1.08000 * 119.79216 * 179.97438 * 12 11 10 29 29 H 0.96998 * 119.99991 * 180.02562 * 14 13 12 30 30 H 1.08997 * 110.97665 * 335.40651 * 17 15 14 31 31 H 1.09009 * 110.96855 * 211.64814 * 17 15 14 32 32 H 1.08996 * 110.23566 * 144.73320 * 18 17 15 33 33 H 1.09001 * 110.22924 * 266.61803 * 18 17 15 34 34 H 1.08006 * 126.57944 * 359.77504 * 20 19 18 35 35 H 1.08008 * 125.98330 * 180.02562 * 21 20 19 36 36 H 1.08003 * 120.16048 * 179.70606 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.7024 1.3462 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8837 2.3964 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0493 -1.2341 0.2857 9 6 1.3512 -2.4075 -0.3721 10 6 1.8271 -3.6501 0.0878 11 6 1.1832 -4.8100 -0.2794 12 6 0.0687 -4.7613 -1.1004 13 6 -0.4140 -3.5392 -1.5629 14 7 -1.5390 -3.5015 -2.3899 15 6 -2.2102 -4.7468 -2.7708 16 1 -2.1342 -5.4823 -1.9700 17 6 -3.6915 -4.4778 -3.1190 18 6 -3.6243 -4.2785 -4.6486 19 7 -2.4360 -5.0226 -5.0906 20 6 -1.8532 -5.5472 -6.2164 21 6 -0.6999 -6.1207 -5.8269 22 7 -0.5799 -5.9536 -4.5028 23 6 -1.6194 -5.2967 -4.0536 24 6 0.2226 -2.3633 -1.2089 25 1 -0.4850 0.8402 -0.0004 26 1 2.6966 -3.6932 0.7271 27 1 1.5494 -5.7626 0.0737 28 1 -0.4296 -5.6767 -1.3835 29 1 -1.8754 -2.6509 -2.7127 30 1 -4.0513 -3.5761 -2.6236 31 1 -4.3141 -5.3356 -2.8645 32 1 -4.5196 -4.6826 -5.1211 33 1 -3.5180 -3.2201 -4.8864 34 1 -2.2452 -5.5080 -7.2220 35 1 0.0054 -6.6274 -6.4691 36 1 -0.1478 -1.4155 -1.5708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313440071.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:17 Heat of formation + Delta-G solvation = 102.703262 kcal Electronic energy + Delta-G solvation = -19768.583068 eV Core-core repulsion = 16832.790034 eV Total energy + Delta-G solvation = -2935.793034 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.25246 -37.96699 -36.52216 -34.16236 -33.04899 -30.84674 -29.37538 -28.49594 -27.87511 -25.70625 -25.09646 -22.14459 -21.23952 -20.60611 -20.23478 -19.41974 -17.40113 -16.59284 -16.22314 -15.54237 -14.79505 -14.73157 -14.28507 -14.15513 -14.04545 -13.69725 -13.02303 -12.77216 -12.71005 -12.40040 -12.15716 -11.69242 -11.58468 -11.27384 -11.16149 -10.98493 -10.50848 -10.35585 -9.62202 -9.59915 -9.42693 -9.38563 -9.27507 -8.81619 -8.21917 -7.22743 -6.69472 -6.20359 -4.24702 2.17896 2.80299 2.89932 3.12633 3.19066 3.26545 3.34784 3.39499 3.94721 4.01828 4.24388 4.51331 4.54595 4.75873 4.80848 5.00901 5.15723 5.47753 5.53686 5.68075 5.73316 5.84740 5.92451 6.36314 6.45758 6.72050 6.91931 7.01664 7.12390 7.19278 7.20554 7.40234 7.45891 7.82136 8.01470 8.16441 8.22541 8.40177 8.52632 8.64681 8.86627 9.06709 9.16540 10.30482 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.004965 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.551816 B = 5638.253237 C = 6018.948543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.078 3.922 3 Si 0.902 3.098 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.136 3.864 10 C -0.253 4.253 11 C -0.067 4.067 12 C -0.279 4.279 13 C 0.210 3.790 14 N -0.742 5.742 15 C 0.236 3.764 16 H 0.107 0.893 17 C -0.138 4.138 18 C 0.104 3.896 19 N -0.484 5.484 20 C -0.050 4.050 21 C -0.025 4.025 22 N -0.466 5.466 23 C 0.187 3.813 24 C -0.224 4.224 25 H 0.275 0.725 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.390 0.610 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.118 -5.198 -8.903 14.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.133 3.867 10 C -0.274 4.274 11 C -0.086 4.086 12 C -0.301 4.301 13 C 0.113 3.887 14 N -0.375 5.375 15 C 0.126 3.874 16 H 0.125 0.875 17 C -0.176 4.176 18 C -0.018 4.018 19 N -0.168 5.168 20 C -0.181 4.181 21 C -0.174 4.174 22 N -0.184 5.184 23 C -0.079 4.079 24 C -0.247 4.247 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.224 0.776 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.184 0.816 35 H 0.187 0.813 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.859 -5.415 -8.543 14.125 hybrid contribution -0.392 1.396 -0.976 1.748 sum -10.251 -4.019 -9.519 14.555 Atomic orbital electron populations 1.69877 1.07471 1.28478 1.36434 1.25851 0.94663 1.01003 0.92334 0.86363 0.81190 0.81396 0.78326 1.18459 1.19949 1.20157 1.19571 0.98041 0.91265 1.40596 0.90592 1.17304 0.90155 0.91877 0.87355 1.20884 1.04597 0.92939 1.08950 1.20288 0.95081 0.96270 0.96938 1.19912 1.03926 0.94361 1.11928 1.17592 0.86323 0.94529 0.90223 1.44322 1.32376 1.04727 1.56099 1.19503 0.88443 0.89083 0.90366 0.87491 1.23034 0.96393 1.05049 0.93161 1.22347 0.86589 0.96887 0.95974 1.46512 1.19638 1.42115 1.08572 1.22271 0.97993 1.06718 0.91164 1.22356 0.97410 1.05643 0.91973 1.69961 1.21371 1.17206 1.09864 1.25347 0.89556 1.00508 0.92453 1.20699 1.02255 0.94907 1.06859 0.91411 0.89395 0.89538 0.89259 0.77554 0.87330 0.88520 0.89373 0.89483 0.81588 0.81261 0.86640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.77 10.96 55.55 0.61 -20.16 16 2 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 3 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 4 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.46 -12.76 9.05 -37.74 -0.34 -13.11 16 8 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 9 C 0.14 3.77 5.57 -106.85 -0.60 3.17 16 10 C -0.25 -6.58 9.79 -38.83 -0.38 -6.96 16 11 C -0.07 -1.61 10.02 -39.69 -0.40 -2.01 16 12 C -0.28 -6.56 9.23 -39.08 -0.36 -6.92 16 13 C 0.21 4.94 6.64 -83.86 -0.56 4.38 16 14 N -0.74 -13.78 5.27 -52.14 -0.27 -14.05 16 15 C 0.24 3.64 2.99 -67.85 -0.20 3.43 16 16 H 0.11 1.72 6.39 -51.93 -0.33 1.39 16 17 C -0.14 -1.36 6.77 -25.20 -0.17 -1.53 16 18 C 0.10 1.00 7.78 -3.04 -0.02 0.98 16 19 N -0.48 -6.68 3.61 -112.28 -0.41 -7.09 16 20 C -0.05 -0.66 12.04 -16.45 -0.20 -0.86 16 21 C -0.02 -0.39 11.86 -17.90 -0.21 -0.60 16 22 N -0.47 -9.00 11.26 -10.56 -0.12 -9.11 16 23 C 0.19 3.20 8.22 -154.86 -1.27 1.93 16 24 C -0.22 -5.90 8.53 -38.67 -0.33 -6.23 16 25 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 26 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 27 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 28 H 0.09 1.96 6.18 -52.49 -0.32 1.64 16 29 H 0.39 6.73 8.64 -40.82 -0.35 6.38 16 30 H 0.11 0.94 8.07 -51.93 -0.42 0.52 16 31 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.17 1.56 8.06 -52.48 -0.42 1.14 16 35 H 0.17 2.12 8.06 -52.48 -0.42 1.69 16 36 H 0.12 3.12 6.16 -52.48 -0.32 2.80 16 LS Contribution 303.94 15.07 4.58 4.58 Total: -1.00 -32.45 303.94 -10.03 -42.48 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -4.26 Total: 11.63 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -5.13 Total: -22.39 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.19 Total: -50.42 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.45 -10.03 -42.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313440071.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.188 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds