Wall clock time and date at job start Mon Mar 30 2020 00:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.47573 * 2 1 4 4 C 1.34639 * 117.00250 * 180.02562 * 3 2 1 5 5 O 1.21399 * 119.99801 * 0.02562 * 4 3 2 6 6 C 1.48366 * 119.99781 * 180.02562 * 4 3 2 7 7 N 1.30690 * 126.41170 * 0.02562 * 6 4 3 8 8 O 1.21293 * 110.10281 * 179.97438 * 7 6 4 9 9 C 1.33693 * 110.02022 * 0.02562 * 8 7 6 10 10 C 1.50701 * 126.43644 * 180.02562 * 9 8 7 11 11 N 1.46894 * 109.47254 * 269.97358 * 10 9 8 12 12 C 1.46903 * 110.99962 * 293.95515 * 11 10 9 13 13 C 1.46901 * 111.00008 * 170.00575 * 11 10 9 14 14 C 1.50704 * 109.47108 * 190.00180 * 13 11 10 15 15 H 1.07995 * 120.00005 * 359.97438 * 14 13 11 16 16 C 1.37873 * 119.99800 * 180.02562 * 14 13 11 17 17 N 1.31524 * 120.00026 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00569 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47225 * 89.99968 * 18 16 14 20 20 H 1.48500 * 109.47511 * 210.00623 * 18 16 14 21 21 H 1.48505 * 109.46610 * 330.00299 * 18 16 14 22 22 N 1.30923 * 107.11637 * 0.02562 * 9 8 7 23 23 H 1.08997 * 109.46989 * 299.99919 * 1 2 3 24 24 H 1.09003 * 109.47029 * 59.99166 * 1 2 3 25 25 H 1.08998 * 109.47458 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46832 * 240.00361 * 2 1 3 27 27 H 1.09001 * 109.47404 * 120.00455 * 2 1 3 28 28 H 1.08999 * 109.47517 * 29.97659 * 10 9 8 29 29 H 1.09007 * 109.46810 * 149.97303 * 10 9 8 30 30 H 1.09005 * 109.46925 * 60.00173 * 12 11 10 31 31 H 1.09005 * 109.46794 * 179.97438 * 12 11 10 32 32 H 1.08998 * 109.47401 * 299.99811 * 12 11 10 33 33 H 1.09000 * 109.47341 * 309.99874 * 13 11 10 34 34 H 1.09002 * 109.47281 * 70.00100 * 13 11 10 35 35 H 0.96993 * 120.00080 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3489 1.5453 -0.0005 5 8 4.0884 0.5825 -0.0015 6 6 3.9160 2.9163 0.0000 7 7 3.2406 4.0352 0.0015 8 8 4.0003 4.9807 0.0020 9 6 5.2662 4.5508 0.0004 10 6 6.5036 5.4109 0.0010 11 7 6.9051 5.6922 -1.3838 12 6 7.3332 4.4645 -2.0675 13 6 7.9589 6.7147 -1.4290 14 6 8.1717 7.1541 -2.8548 15 1 7.5833 6.7171 -3.6480 16 6 9.1183 8.1130 -3.1466 17 7 9.3037 8.4969 -4.3908 18 14 10.1366 8.8684 -1.7748 19 1 11.3707 8.0668 -1.5754 20 1 10.5039 10.2602 -2.1395 21 1 9.3446 8.8785 -0.5186 22 7 5.2287 3.2421 -0.0018 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 6.2943 6.3484 0.5161 29 1 7.3102 4.8868 0.5138 30 1 6.5100 3.7500 -2.0806 31 1 7.6245 4.7014 -3.0909 32 1 8.1821 4.0312 -1.5388 33 1 7.6598 7.5717 -0.8256 34 1 8.8860 6.2986 -1.0348 35 1 9.9694 9.1718 -4.5961 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314217235.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:03 Heat of formation + Delta-G solvation = 2.975278 kcal Electronic energy + Delta-G solvation = -19972.753586 eV Core-core repulsion = 16589.494008 eV Total energy + Delta-G solvation = -3383.259578 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.82272 -40.71153 -37.34797 -37.09078 -35.70697 -33.27331 -32.39362 -31.93217 -28.62949 -27.49714 -26.50974 -24.47991 -23.59680 -22.84022 -21.40763 -20.49347 -18.42431 -18.30787 -17.72742 -16.96607 -16.88972 -16.57388 -15.24231 -14.79019 -14.67344 -14.52302 -14.09904 -14.02123 -13.21930 -12.99764 -12.69617 -12.47851 -12.34821 -12.05158 -11.98542 -11.93563 -11.46610 -11.34852 -11.20284 -11.11578 -10.97112 -10.83666 -10.49839 -10.27724 -9.92596 -9.42642 -8.66026 -7.76102 -6.12519 -4.11859 0.55598 1.37335 1.71666 2.56231 2.64322 3.23442 3.30618 3.32030 3.58989 3.78097 4.34442 4.51820 4.52396 4.59606 4.68849 4.84757 5.13174 5.19344 5.24718 5.33316 5.36773 5.53481 5.56752 5.68699 5.88488 5.93963 6.11928 6.54461 6.68194 6.80041 7.17020 7.36122 7.59053 7.74125 7.86005 8.51504 8.95335 9.46831 11.00295 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.047451 B = 0.003327 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.943071 B = 8413.255644 C = 8489.474267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.340 6.340 4 C 0.568 3.432 5 O -0.466 6.466 6 C 0.138 3.862 7 N -0.326 5.326 8 O 0.115 5.885 9 C 0.224 3.776 10 C 0.133 3.867 11 N -0.526 5.526 12 C 0.030 3.970 13 C 0.164 3.836 14 C -0.514 4.514 15 H 0.082 0.918 16 C 0.070 3.930 17 N -0.897 5.897 18 Si 0.876 3.124 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.265 1.265 22 N -0.441 5.441 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.023 0.977 33 H 0.036 0.964 34 H -0.007 1.007 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.304 -12.528 11.583 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.255 6.255 4 C 0.407 3.593 5 O -0.348 6.348 6 C -0.133 4.133 7 N -0.029 5.029 8 O 0.043 5.957 9 C 0.003 3.997 10 C 0.003 3.997 11 N -0.252 5.252 12 C -0.118 4.118 13 C 0.039 3.961 14 C -0.552 4.552 15 H 0.100 0.900 16 C -0.132 4.132 17 N -0.535 5.535 18 Si 0.703 3.297 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.190 1.190 22 N -0.176 5.176 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.133 0.867 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.011 0.989 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.149 -13.082 11.215 22.296 hybrid contribution 1.421 0.121 0.946 1.711 sum -12.728 -12.960 12.161 21.860 Atomic orbital electron populations 1.21826 0.91930 1.03264 1.03966 1.23231 0.95791 0.78739 1.03262 1.86574 1.21728 1.33488 1.83724 1.18671 0.81326 0.85342 0.73958 1.90903 1.60522 1.40031 1.43315 1.24008 0.87421 0.93464 1.08382 1.75056 1.17118 0.95489 1.15244 1.85371 1.15897 1.31005 1.63461 1.29141 0.88598 0.89059 0.92914 1.20779 0.86730 0.97190 0.95050 1.62040 1.43190 1.10681 1.09284 1.22383 0.98008 0.90246 1.01155 1.20273 0.86895 0.89365 0.99571 1.20944 1.20557 1.22459 0.91280 0.89967 1.24886 0.96722 0.96201 0.95385 1.69884 1.34451 1.31286 1.17884 0.86860 0.80979 0.78993 0.82874 1.20266 1.21070 1.19010 1.72075 1.15843 1.10631 1.19066 0.91227 0.91134 0.89749 0.90509 0.90598 0.86708 0.89996 0.93235 0.89409 0.95800 0.94598 0.98922 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.29 37.16 0.38 -0.51 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.34 -4.17 10.23 -40.33 -0.41 -4.59 16 4 C 0.57 8.34 7.99 34.90 0.28 8.62 16 5 O -0.47 -7.56 16.89 -19.19 -0.32 -7.88 16 6 C 0.14 2.18 8.04 -156.18 -1.26 0.92 16 7 N -0.33 -5.02 12.20 30.93 0.38 -4.64 16 8 O 0.11 1.71 11.29 17.97 0.20 1.91 16 9 C 0.22 3.37 7.11 -13.00 -0.09 3.27 16 10 C 0.13 1.93 5.59 -4.98 -0.03 1.90 16 11 N -0.53 -10.04 4.74 -245.82 -1.17 -11.21 16 12 C 0.03 0.57 9.18 60.07 0.55 1.12 16 13 C 0.16 3.59 3.79 -4.97 -0.02 3.57 16 14 C -0.51 -13.78 9.01 -34.44 -0.31 -14.09 16 15 H 0.08 2.43 7.37 -52.49 -0.39 2.04 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -26.56 13.96 55.43 0.77 -25.78 16 18 Si 0.88 20.22 27.47 -169.99 -4.67 15.55 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.27 -5.72 6.54 56.52 0.37 -5.35 16 22 N -0.44 -7.22 10.87 -9.94 -0.11 -7.33 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.11 1.39 7.93 -51.93 -0.41 0.97 16 29 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 30 H 0.05 0.89 6.74 -51.93 -0.35 0.54 16 31 H 0.09 1.82 6.76 -51.93 -0.35 1.47 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.04 0.76 6.99 -51.93 -0.36 0.40 16 34 H -0.01 -0.15 7.55 -51.93 -0.39 -0.54 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 309.69 15.07 4.67 4.67 Total: -1.00 -31.18 309.69 -5.40 -36.57 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: -4.38 Total: -4.69 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -0.36 Total: 7.42 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.12 Total: -48.96 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.53 Total: -10.56 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.18 -5.40 -36.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314217235.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.548 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds