Wall clock time and date at job start Mon Mar 30 2020 00:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.47573 * 2 1 4 4 C 1.34639 * 117.00250 * 180.02562 * 3 2 1 5 5 O 1.21399 * 119.99801 * 0.02562 * 4 3 2 6 6 C 1.48366 * 119.99781 * 180.02562 * 4 3 2 7 7 N 1.30690 * 126.41170 * 0.02562 * 6 4 3 8 8 O 1.21293 * 110.10281 * 179.97438 * 7 6 4 9 9 C 1.33693 * 110.02022 * 0.02562 * 8 7 6 10 10 C 1.50701 * 126.43644 * 180.02562 * 9 8 7 11 11 N 1.46894 * 109.47254 * 269.97358 * 10 9 8 12 12 C 1.46903 * 110.99962 * 293.95515 * 11 10 9 13 13 C 1.46901 * 111.00008 * 170.00575 * 11 10 9 14 14 C 1.50704 * 109.47108 * 190.00180 * 13 11 10 15 15 H 1.07995 * 120.00005 * 359.97438 * 14 13 11 16 16 C 1.37873 * 119.99800 * 180.02562 * 14 13 11 17 17 N 1.31524 * 120.00026 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00569 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47225 * 89.99968 * 18 16 14 20 20 H 1.48500 * 109.47511 * 210.00623 * 18 16 14 21 21 H 1.48505 * 109.46610 * 330.00299 * 18 16 14 22 22 N 1.30923 * 107.11637 * 0.02562 * 9 8 7 23 23 H 1.08997 * 109.46989 * 299.99919 * 1 2 3 24 24 H 1.09003 * 109.47029 * 59.99166 * 1 2 3 25 25 H 1.08998 * 109.47458 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46832 * 240.00361 * 2 1 3 27 27 H 1.09001 * 109.47404 * 120.00455 * 2 1 3 28 28 H 1.08999 * 109.47517 * 29.97659 * 10 9 8 29 29 H 1.09007 * 109.46810 * 149.97303 * 10 9 8 30 30 H 1.09005 * 109.46925 * 60.00173 * 12 11 10 31 31 H 1.09005 * 109.46794 * 179.97438 * 12 11 10 32 32 H 1.08998 * 109.47401 * 299.99811 * 12 11 10 33 33 H 1.09000 * 109.47341 * 309.99874 * 13 11 10 34 34 H 1.09002 * 109.47281 * 70.00100 * 13 11 10 35 35 H 0.96993 * 120.00080 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3489 1.5453 -0.0005 5 8 4.0884 0.5825 -0.0015 6 6 3.9160 2.9163 0.0000 7 7 3.2406 4.0352 0.0015 8 8 4.0003 4.9807 0.0020 9 6 5.2662 4.5508 0.0004 10 6 6.5036 5.4109 0.0010 11 7 6.9051 5.6922 -1.3838 12 6 7.3332 4.4645 -2.0675 13 6 7.9589 6.7147 -1.4290 14 6 8.1717 7.1541 -2.8548 15 1 7.5833 6.7171 -3.6480 16 6 9.1183 8.1130 -3.1466 17 7 9.3037 8.4969 -4.3908 18 14 10.1366 8.8684 -1.7748 19 1 11.3707 8.0668 -1.5754 20 1 10.5039 10.2602 -2.1395 21 1 9.3446 8.8785 -0.5186 22 7 5.2287 3.2421 -0.0018 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 6.2943 6.3484 0.5161 29 1 7.3102 4.8868 0.5138 30 1 6.5100 3.7500 -2.0806 31 1 7.6245 4.7014 -3.0909 32 1 8.1821 4.0312 -1.5388 33 1 7.6598 7.5717 -0.8256 34 1 8.8860 6.2986 -1.0348 35 1 9.9694 9.1718 -4.5961 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314217235.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:02 Heat of formation + Delta-G solvation = -20.585153 kcal Electronic energy + Delta-G solvation = -19973.775243 eV Core-core repulsion = 16589.494008 eV Total energy + Delta-G solvation = -3384.281235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.02878 -41.76373 -38.76493 -38.15728 -36.94389 -34.87159 -33.98616 -32.68262 -30.29699 -28.94962 -27.62824 -26.09948 -24.55832 -23.90990 -22.65617 -21.99177 -19.62626 -19.50493 -18.89234 -18.81608 -17.84709 -17.68397 -16.76525 -16.25287 -16.18021 -15.71201 -15.35998 -15.03049 -14.47740 -14.35750 -13.83628 -13.73841 -13.50776 -13.35241 -13.13659 -12.91652 -12.69225 -12.66727 -12.57671 -12.53113 -12.33632 -12.18872 -11.74346 -11.71586 -11.53226 -11.41379 -10.73020 -9.24862 -8.21739 -6.26636 -0.62135 0.18484 0.70506 1.38851 1.44908 1.46299 1.47766 1.56804 2.42023 2.44280 2.70590 3.11307 3.22227 3.56492 3.91941 3.92449 3.99580 4.18841 4.24041 4.37260 4.46687 4.51759 4.61116 4.65085 4.85693 4.90544 4.91623 5.03562 5.16597 5.23023 5.55053 5.87764 6.09803 6.13425 6.56079 6.67129 6.80656 7.36591 8.95001 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.047451 B = 0.003327 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.943071 B = 8413.255644 C = 8489.474267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.342 6.342 4 C 0.572 3.428 5 O -0.487 6.487 6 C 0.128 3.872 7 N -0.328 5.328 8 O 0.120 5.880 9 C 0.229 3.771 10 C 0.135 3.865 11 N -0.545 5.545 12 C 0.040 3.960 13 C 0.172 3.828 14 C -0.519 4.519 15 H 0.034 0.966 16 C 0.005 3.995 17 N -0.953 5.953 18 Si 0.950 3.050 19 H -0.271 1.271 20 H -0.290 1.290 21 H -0.230 1.230 22 N -0.458 5.458 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.147 0.853 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.006 0.994 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.652 -12.684 14.327 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.257 6.257 4 C 0.411 3.589 5 O -0.371 6.371 6 C -0.143 4.143 7 N -0.030 5.030 8 O 0.047 5.953 9 C 0.008 3.992 10 C 0.006 3.994 11 N -0.271 5.271 12 C -0.108 4.108 13 C 0.046 3.954 14 C -0.557 4.557 15 H 0.052 0.948 16 C -0.192 4.192 17 N -0.594 5.594 18 Si 0.772 3.228 19 H -0.196 1.196 20 H -0.216 1.216 21 H -0.153 1.153 22 N -0.193 5.193 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.129 0.871 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.165 0.835 29 H 0.123 0.877 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.023 0.977 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.544 -13.265 13.982 24.145 hybrid contribution 1.392 0.075 0.019 1.394 sum -13.152 -13.190 14.000 23.302 Atomic orbital electron populations 1.21872 0.89689 1.04954 1.03865 1.23655 0.97470 0.77046 1.03885 1.86588 1.20221 1.35873 1.82988 1.18635 0.81993 0.84732 0.73510 1.90884 1.61176 1.40463 1.44624 1.24258 0.87408 0.94100 1.08506 1.75045 1.17267 0.95512 1.15216 1.85363 1.15915 1.30786 1.63233 1.29207 0.88716 0.88803 0.92435 1.20965 0.86836 0.99136 0.92513 1.61797 1.42383 1.10336 1.12588 1.22215 0.98620 0.90406 0.99608 1.20060 0.88316 0.90762 0.96225 1.21245 1.19482 1.21893 0.93119 0.94808 1.25906 0.98295 0.96903 0.98132 1.70069 1.35880 1.32599 1.20830 0.85686 0.79309 0.77365 0.80394 1.19608 1.21562 1.15304 1.72063 1.16322 1.11353 1.19566 0.91099 0.91426 0.87104 0.90191 0.89768 0.83481 0.87704 0.92762 0.92696 0.94538 0.92676 0.97656 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 71.98 0.74 -0.70 16 2 C 0.05 0.82 6.19 71.98 0.45 1.26 16 3 O -0.34 -8.09 10.23 -55.48 -0.57 -8.66 16 4 C 0.57 16.44 7.99 70.52 0.56 17.00 16 5 O -0.49 -15.61 16.89 20.16 0.34 -15.27 16 6 C 0.13 3.92 8.04 137.29 1.10 5.03 16 7 N -0.33 -9.70 12.20 -59.34 -0.72 -10.43 16 8 O 0.12 3.36 11.29 74.38 0.84 4.20 16 9 C 0.23 6.40 7.11 88.36 0.63 7.03 16 10 C 0.13 3.46 5.59 85.56 0.48 3.94 16 11 N -0.55 -19.84 4.74 -931.62 -4.42 -24.26 16 12 C 0.04 1.48 9.18 127.69 1.17 2.65 16 13 C 0.17 7.13 3.79 85.56 0.32 7.46 16 14 C -0.52 -28.14 9.01 25.60 0.23 -27.90 16 15 H 0.03 2.10 7.37 -2.91 -0.02 2.08 16 16 C 0.00 0.25 5.47 84.65 0.46 0.71 16 17 N -0.95 -58.16 13.96 21.45 0.30 -57.86 16 18 Si 0.95 40.58 27.47 68.60 1.88 42.46 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 20 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.23 -8.49 6.54 99.48 0.65 -7.83 16 22 N -0.46 -14.34 10.87 -302.79 -3.29 -17.63 16 23 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.15 2.85 7.93 -2.39 -0.02 2.83 16 29 H 0.11 2.31 8.12 -2.38 -0.02 2.29 16 30 H 0.05 1.93 6.74 -2.38 -0.02 1.91 16 31 H 0.05 2.36 6.76 -2.38 -0.02 2.34 16 32 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 2.10 6.99 -2.39 -0.02 2.09 16 34 H 0.01 0.22 7.55 -2.39 -0.02 0.21 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -69.12 309.69 1.57 -67.55 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: 1.05 Total: 3.41 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 6.15 Total: 16.48 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -8.13 Total: -110.17 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.61 Total: -19.73 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.88 Total: 42.46 kcal Total: -69.12 1.57 -67.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314217235.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.967 kcal (2) G-P(sol) polarization free energy of solvation -69.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds