Wall clock time and date at job start Mon Mar 30 2020 00:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81395 * 103.00386 * 2 1 4 4 C 1.50703 * 115.55042 * 297.98247 * 3 2 1 5 5 O 1.21282 * 120.00415 * 108.82223 * 4 3 2 6 6 N 1.34781 * 119.99557 * 288.82689 * 4 3 2 7 7 C 1.46931 * 120.62879 * 175.02218 * 6 4 3 8 8 C 1.53188 * 108.77224 * 233.62568 * 7 6 4 9 9 C 1.53038 * 109.31617 * 305.36452 * 8 7 6 10 10 C 1.50697 * 109.46089 * 181.38319 * 9 8 7 11 11 H 1.08002 * 120.00037 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99778 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99845 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00288 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47300 * 89.99515 * 14 12 10 16 16 H 1.48503 * 109.47171 * 209.99794 * 14 12 10 17 17 H 1.48506 * 109.46892 * 329.99720 * 14 12 10 18 18 C 1.53039 * 109.53630 * 61.36592 * 9 8 7 19 19 C 1.46926 * 120.63383 * 355.03958 * 6 4 3 20 20 C 1.53007 * 117.52135 * 83.67792 * 3 2 1 21 21 C 1.53000 * 59.99913 * 107.48477 * 20 3 2 22 22 H 1.08995 * 109.47535 * 185.06047 * 1 2 3 23 23 H 1.09002 * 109.46738 * 305.05786 * 1 2 3 24 24 H 1.09004 * 109.47050 * 65.05356 * 1 2 3 25 25 H 1.09001 * 109.58629 * 113.83815 * 7 6 4 26 26 H 1.09002 * 109.69989 * 353.48589 * 7 6 4 27 27 H 1.08997 * 109.49706 * 185.40865 * 8 7 6 28 28 H 1.09007 * 109.49671 * 65.31662 * 8 7 6 29 29 H 1.08998 * 109.45800 * 301.34893 * 9 8 7 30 30 H 0.97003 * 120.00073 * 179.97438 * 13 12 10 31 31 H 1.09003 * 109.50210 * 58.58636 * 18 9 8 32 32 H 1.09002 * 109.50048 * 178.68512 * 18 9 8 33 33 H 1.09002 * 109.58902 * 246.16310 * 19 6 4 34 34 H 1.08996 * 109.58533 * 6.58097 * 19 6 4 35 35 H 1.09000 * 117.49969 * 214.97289 * 20 3 2 36 36 H 1.08998 * 117.49145 * 359.97438 * 20 3 2 37 37 H 1.09004 * 117.49917 * 252.51350 * 21 20 3 38 38 H 1.09005 * 117.49683 * 107.49093 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 1.7468 2.5443 -1.2007 5 8 0.8357 3.3369 -1.0884 6 7 2.3342 2.3581 -2.3994 7 6 1.8128 3.0253 -3.6002 8 6 1.5529 1.9682 -4.6780 9 6 2.8310 1.1600 -4.9129 10 6 2.5888 0.1414 -5.9968 11 1 1.6205 0.0771 -6.4709 12 6 3.6037 -0.7079 -6.3839 13 7 3.3924 -1.5965 -7.3302 14 14 5.2786 -0.5963 -5.5645 15 1 5.3128 -1.4957 -4.3834 16 1 6.3302 -1.0065 -6.5296 17 1 5.5245 0.8021 -5.1291 18 6 3.2287 0.4440 -3.6201 19 6 3.5077 1.4838 -2.5304 20 6 2.2356 2.4899 1.3487 21 6 3.5519 2.1855 0.6307 22 1 -0.3634 -1.0236 0.0906 23 1 -0.3633 0.5903 0.8412 24 1 -0.3633 0.4335 -0.9318 25 1 2.5447 3.7463 -3.9644 26 1 0.8819 3.5391 -3.3601 27 1 1.2572 2.4591 -5.6052 28 1 0.7560 1.3012 -4.3487 29 1 3.6340 1.8310 -5.2182 30 1 4.1065 -2.1937 -7.6028 31 1 2.4162 -0.2086 -3.3008 32 1 4.1259 -0.1500 -3.7944 33 1 4.3778 2.0791 -2.8074 34 1 3.6947 0.9789 -1.5827 35 1 1.9007 3.5271 1.3674 36 1 1.9988 1.9032 2.2362 37 1 4.1814 1.3984 1.0460 38 1 4.0830 3.0224 0.1771 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335843042.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:45 Heat of formation + Delta-G solvation = -5.161461 kcal Electronic energy + Delta-G solvation = -19482.423214 eV Core-core repulsion = 16645.104014 eV Total energy + Delta-G solvation = -2837.319199 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.15593 -37.43207 -36.25381 -33.51795 -31.49897 -30.60785 -28.92641 -26.78338 -24.69647 -22.94306 -22.43096 -22.28475 -19.94120 -18.79158 -17.42921 -16.69410 -16.22033 -15.84225 -15.14302 -14.63650 -14.50501 -13.90292 -13.54184 -13.47153 -13.36920 -13.16524 -12.71361 -12.54207 -12.38751 -12.06695 -11.95827 -11.83416 -11.36363 -11.00578 -10.75268 -10.71477 -10.37546 -10.17382 -10.06695 -9.74868 -9.51757 -9.31348 -9.08102 -8.55396 -8.22733 -7.69134 -6.08720 -4.07852 1.42336 2.19195 2.93172 3.10045 3.24368 3.33337 3.36960 3.46194 4.38237 4.42197 4.47704 4.58471 5.13024 5.16984 5.20432 5.23238 5.34455 5.43656 5.57441 5.61203 5.68947 5.74012 5.80367 5.83716 5.92034 5.98386 6.20177 6.29697 6.61963 6.68657 6.76831 6.91927 7.18066 7.50052 7.64587 7.74456 8.28049 8.50578 8.95324 9.53463 11.04668 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.023531 B = 0.006506 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.622596 B = 4302.378206 C = 4515.591864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.166 6.166 3 C -0.154 4.154 4 C 0.551 3.449 5 O -0.548 6.548 6 N -0.586 5.586 7 C 0.108 3.892 8 C -0.112 4.112 9 C 0.014 3.986 10 C -0.512 4.512 11 H 0.073 0.927 12 C 0.069 3.931 13 N -0.901 5.901 14 Si 0.885 3.115 15 H -0.277 1.277 16 H -0.298 1.298 17 H -0.265 1.265 18 C -0.131 4.131 19 C 0.104 3.896 20 C -0.128 4.128 21 C -0.126 4.126 22 H 0.103 0.897 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.027 0.973 30 H 0.263 0.737 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.180 6.261 16.599 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.063 5.937 3 C -0.267 4.267 4 C 0.335 3.665 5 O -0.427 6.427 6 N -0.317 5.317 7 C -0.013 4.013 8 C -0.150 4.150 9 C -0.005 4.005 10 C -0.550 4.550 11 H 0.091 0.909 12 C -0.132 4.132 13 N -0.539 5.539 14 Si 0.715 3.285 15 H -0.204 1.204 16 H -0.225 1.225 17 H -0.190 1.190 18 C -0.169 4.169 19 C -0.019 4.019 20 C -0.168 4.168 21 C -0.165 4.165 22 H 0.122 0.878 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.085 5.612 16.507 17.435 hybrid contribution 0.155 0.701 0.189 0.743 sum 0.240 6.313 16.696 17.851 Atomic orbital electron populations 1.23445 0.94381 1.06252 1.05648 1.86541 1.07447 1.02412 1.97271 1.23529 1.08958 0.96879 0.97289 1.19255 0.82346 0.81667 0.83254 1.90657 1.30472 1.36804 1.84761 1.47991 1.30378 1.46326 1.07016 1.21819 0.99419 0.95513 0.84579 1.21826 1.00018 0.96708 0.96480 1.19140 0.93455 0.95153 0.92717 1.21025 0.99794 1.16120 1.18025 0.90896 1.25032 0.98547 0.94931 0.94739 1.69901 1.33285 1.20943 1.29798 0.86884 0.84195 0.78871 0.78538 1.20363 1.22536 1.19041 1.22333 1.01539 0.97252 0.95810 1.21979 0.86450 0.92514 1.00941 1.23262 0.99413 1.01739 0.92411 1.23060 0.89347 1.03129 1.00940 0.87831 0.90248 0.90182 0.91832 0.89998 0.91283 0.92328 0.95515 0.92686 0.91096 0.92503 0.92059 0.90234 0.87488 0.87053 0.86902 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 10.67 101.05 1.08 -0.48 16 2 S -0.17 -2.26 21.27 -107.50 -2.29 -4.54 16 3 C -0.15 -2.07 1.11 -91.77 -0.10 -2.17 16 4 C 0.55 9.15 6.85 -10.98 -0.08 9.08 16 5 O -0.55 -10.44 16.28 5.56 0.09 -10.35 16 6 N -0.59 -9.97 2.97 -172.77 -0.51 -10.48 16 7 C 0.11 1.86 6.41 -3.71 -0.02 1.84 16 8 C -0.11 -2.19 5.30 -26.61 -0.14 -2.33 16 9 C 0.01 0.32 1.66 -91.73 -0.15 0.17 16 10 C -0.51 -13.99 9.14 -34.44 -0.31 -14.30 16 11 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 12 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 13 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 14 Si 0.88 21.26 24.38 -169.99 -4.14 17.11 16 15 H -0.28 -6.44 6.86 56.52 0.39 -6.06 16 16 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 17 H -0.27 -5.99 6.53 56.52 0.37 -5.62 16 18 C -0.13 -2.70 4.85 -26.61 -0.13 -2.83 16 19 C 0.10 1.75 6.11 -3.71 -0.02 1.73 16 20 C -0.13 -1.36 9.84 -26.73 -0.26 -1.62 16 21 C -0.13 -1.32 9.02 -26.73 -0.24 -1.56 16 22 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 24 H 0.08 1.11 8.14 -51.92 -0.42 0.68 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.08 1.40 7.04 -51.93 -0.37 1.03 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 29 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.06 1.24 3.24 -51.93 -0.17 1.07 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.22 4.88 -51.93 -0.25 0.97 16 35 H 0.11 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 312.08 15.07 4.70 4.70 Total: -1.00 -31.05 312.08 -7.69 -38.74 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.83 Total: 1.92 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -0.48 Total: -10.64 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.26 Total: -36.95 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.14 Total: 17.11 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -2.29 Total: -4.54 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.05 -7.69 -38.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335843042.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.583 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds