Wall clock time and date at job start Mon Mar 30 2020 00:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81395 * 103.00386 * 2 1 4 4 C 1.50703 * 115.55042 * 297.98247 * 3 2 1 5 5 O 1.21282 * 120.00415 * 108.82223 * 4 3 2 6 6 N 1.34781 * 119.99557 * 288.82689 * 4 3 2 7 7 C 1.46931 * 120.62879 * 175.02218 * 6 4 3 8 8 C 1.53188 * 108.77224 * 233.62568 * 7 6 4 9 9 C 1.53038 * 109.31617 * 305.36452 * 8 7 6 10 10 C 1.50697 * 109.46089 * 181.38319 * 9 8 7 11 11 H 1.08002 * 120.00037 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99778 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99845 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00288 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47300 * 89.99515 * 14 12 10 16 16 H 1.48503 * 109.47171 * 209.99794 * 14 12 10 17 17 H 1.48506 * 109.46892 * 329.99720 * 14 12 10 18 18 C 1.53039 * 109.53630 * 61.36592 * 9 8 7 19 19 C 1.46926 * 120.63383 * 355.03958 * 6 4 3 20 20 C 1.53007 * 117.52135 * 83.67792 * 3 2 1 21 21 C 1.53000 * 59.99913 * 107.48477 * 20 3 2 22 22 H 1.08995 * 109.47535 * 185.06047 * 1 2 3 23 23 H 1.09002 * 109.46738 * 305.05786 * 1 2 3 24 24 H 1.09004 * 109.47050 * 65.05356 * 1 2 3 25 25 H 1.09001 * 109.58629 * 113.83815 * 7 6 4 26 26 H 1.09002 * 109.69989 * 353.48589 * 7 6 4 27 27 H 1.08997 * 109.49706 * 185.40865 * 8 7 6 28 28 H 1.09007 * 109.49671 * 65.31662 * 8 7 6 29 29 H 1.08998 * 109.45800 * 301.34893 * 9 8 7 30 30 H 0.97003 * 120.00073 * 179.97438 * 13 12 10 31 31 H 1.09003 * 109.50210 * 58.58636 * 18 9 8 32 32 H 1.09002 * 109.50048 * 178.68512 * 18 9 8 33 33 H 1.09002 * 109.58902 * 246.16310 * 19 6 4 34 34 H 1.08996 * 109.58533 * 6.58097 * 19 6 4 35 35 H 1.09000 * 117.49969 * 214.97289 * 20 3 2 36 36 H 1.08998 * 117.49145 * 359.97438 * 20 3 2 37 37 H 1.09004 * 117.49917 * 252.51350 * 21 20 3 38 38 H 1.09005 * 117.49683 * 107.49093 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 1.7468 2.5443 -1.2007 5 8 0.8357 3.3369 -1.0884 6 7 2.3342 2.3581 -2.3994 7 6 1.8128 3.0253 -3.6002 8 6 1.5529 1.9682 -4.6780 9 6 2.8310 1.1600 -4.9129 10 6 2.5888 0.1414 -5.9968 11 1 1.6205 0.0771 -6.4709 12 6 3.6037 -0.7079 -6.3839 13 7 3.3924 -1.5965 -7.3302 14 14 5.2786 -0.5963 -5.5645 15 1 5.3128 -1.4957 -4.3834 16 1 6.3302 -1.0065 -6.5296 17 1 5.5245 0.8021 -5.1291 18 6 3.2287 0.4440 -3.6201 19 6 3.5077 1.4838 -2.5304 20 6 2.2356 2.4899 1.3487 21 6 3.5519 2.1855 0.6307 22 1 -0.3634 -1.0236 0.0906 23 1 -0.3633 0.5903 0.8412 24 1 -0.3633 0.4335 -0.9318 25 1 2.5447 3.7463 -3.9644 26 1 0.8819 3.5391 -3.3601 27 1 1.2572 2.4591 -5.6052 28 1 0.7560 1.3012 -4.3487 29 1 3.6340 1.8310 -5.2182 30 1 4.1065 -2.1937 -7.6028 31 1 2.4162 -0.2086 -3.3008 32 1 4.1259 -0.1500 -3.7944 33 1 4.3778 2.0791 -2.8074 34 1 3.6947 0.9789 -1.5827 35 1 1.9007 3.5271 1.3674 36 1 1.9988 1.9032 2.2362 37 1 4.1814 1.3984 1.0460 38 1 4.0830 3.0224 0.1771 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335843042.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:45 Heat of formation + Delta-G solvation = -24.269901 kcal Electronic energy + Delta-G solvation = -19483.251818 eV Core-core repulsion = 16645.104014 eV Total energy + Delta-G solvation = -2838.147804 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.43858 -38.85341 -37.32929 -35.31952 -33.38791 -32.11684 -29.88764 -28.47612 -26.08931 -24.26733 -23.82939 -23.42485 -21.42772 -20.14191 -18.92059 -18.54717 -17.47377 -16.94921 -16.56193 -16.22577 -15.68126 -15.26381 -15.07511 -14.92647 -14.49559 -14.39548 -14.26815 -14.09282 -13.72439 -13.62637 -13.37280 -12.80634 -12.62074 -12.33174 -12.29115 -12.08724 -11.79672 -11.68761 -11.52259 -11.41495 -11.11217 -11.02301 -10.69334 -10.60252 -9.65781 -8.72996 -8.26910 -6.31525 0.41650 1.15587 1.34079 1.39525 1.50089 1.78134 1.89614 2.35975 2.53952 3.08330 3.28737 3.53325 3.76949 4.00475 4.08591 4.18270 4.20373 4.24472 4.25529 4.42483 4.47706 4.57385 4.61024 4.71777 4.78065 4.79478 4.85416 4.93557 5.06907 5.09207 5.10381 5.36867 5.54380 5.68258 5.75378 6.32209 6.33767 6.75102 6.99365 7.33919 8.90143 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.023531 B = 0.006506 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.622596 B = 4302.378206 C = 4515.591864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.183 6.183 3 C -0.178 4.178 4 C 0.550 3.450 5 O -0.577 6.577 6 N -0.591 5.591 7 C 0.116 3.884 8 C -0.105 4.105 9 C 0.015 3.985 10 C -0.519 4.519 11 H 0.026 0.974 12 C 0.008 3.992 13 N -0.954 5.954 14 Si 0.948 3.052 15 H -0.262 1.262 16 H -0.303 1.303 17 H -0.235 1.235 18 C -0.127 4.127 19 C 0.113 3.887 20 C -0.114 4.114 21 C -0.108 4.108 22 H 0.119 0.881 23 H 0.092 0.908 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 7.454 19.457 20.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.046 5.954 3 C -0.291 4.291 4 C 0.336 3.664 5 O -0.458 6.458 6 N -0.322 5.322 7 C -0.006 4.006 8 C -0.144 4.144 9 C -0.004 4.004 10 C -0.557 4.557 11 H 0.045 0.955 12 C -0.189 4.189 13 N -0.594 5.594 14 Si 0.774 3.226 15 H -0.188 1.188 16 H -0.231 1.231 17 H -0.158 1.158 18 C -0.165 4.165 19 C -0.010 4.010 20 C -0.154 4.154 21 C -0.146 4.146 22 H 0.138 0.862 23 H 0.111 0.889 24 H 0.075 0.925 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.064 6.821 19.390 20.658 hybrid contribution -0.624 0.315 -0.775 1.044 sum 1.439 7.136 18.615 19.988 Atomic orbital electron populations 1.23464 0.93591 1.07390 1.04890 1.86539 1.08501 1.03100 1.97234 1.23505 1.12148 0.96227 0.97180 1.19778 0.81560 0.81253 0.83838 1.90638 1.31579 1.38230 1.85312 1.48058 1.30600 1.46357 1.07192 1.21691 1.00230 0.94715 0.83978 1.21696 0.98145 0.96892 0.97631 1.19095 0.94885 0.94233 0.92179 1.21347 0.97911 1.17324 1.19081 0.95514 1.25968 1.03189 0.94378 0.95323 1.70073 1.34847 1.22451 1.32039 0.85851 0.78254 0.80783 0.77689 1.18763 1.23080 1.15805 1.22157 1.00536 0.97865 0.95934 1.21931 0.86865 0.91773 1.00400 1.23364 0.99235 1.01382 0.91441 1.23274 0.88644 1.03505 0.99227 0.86233 0.88931 0.92542 0.89789 0.90023 0.91359 0.94210 0.94883 0.92680 0.92774 0.93111 0.89983 0.88235 0.87875 0.85157 0.84989 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.88 10.67 113.37 1.21 -1.67 16 2 S -0.18 -4.58 21.27 -56.49 -1.20 -5.78 16 3 C -0.18 -4.26 1.11 -11.54 -0.01 -4.28 16 4 C 0.55 17.12 6.85 87.66 0.60 17.72 16 5 O -0.58 -21.18 16.28 -3.04 -0.05 -21.23 16 6 N -0.59 -18.74 2.97 -818.90 -2.43 -21.18 16 7 C 0.12 3.78 6.41 86.36 0.55 4.34 16 8 C -0.11 -4.11 5.30 30.67 0.16 -3.95 16 9 C 0.01 0.66 1.66 -11.51 -0.02 0.64 16 10 C -0.52 -29.19 9.14 25.60 0.23 -28.96 16 11 H 0.03 1.69 7.99 -2.91 -0.02 1.67 16 12 C 0.01 0.45 5.45 84.65 0.46 0.91 16 13 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 14 Si 0.95 43.02 24.38 68.60 1.67 44.69 16 15 H -0.26 -11.20 6.86 99.48 0.68 -10.52 16 16 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 17 H -0.23 -9.42 6.53 99.48 0.65 -8.78 16 18 C -0.13 -4.99 4.85 30.67 0.15 -4.84 16 19 C 0.11 3.43 6.11 86.36 0.53 3.96 16 20 C -0.11 -2.03 9.84 30.60 0.30 -1.73 16 21 C -0.11 -1.80 9.02 30.59 0.28 -1.52 16 22 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.08 2.70 7.04 -2.39 -0.02 2.68 16 27 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.03 1.44 7.20 -2.39 -0.02 1.42 16 30 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.05 2.07 3.24 -2.39 -0.01 2.06 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.10 2.67 4.88 -2.39 -0.01 2.66 16 35 H 0.10 1.95 8.10 -2.39 -0.02 1.93 16 36 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -69.22 312.08 3.69 -65.53 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.96 Total: 16.66 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 4.44 Total: -19.38 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -2.13 Total: -80.49 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.67 Total: 44.69 kcal Atomic # 16 Polarization: -4.58 SS G_CDS: -1.20 Total: -5.78 kcal Total: -69.22 3.69 -65.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335843042.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.258 kcal (2) G-P(sol) polarization free energy of solvation -69.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds