Wall clock time and date at job start Mon Mar 30 2020 00:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46714 * 2 1 4 4 C 1.37096 * 120.00188 * 273.02072 * 3 2 1 5 5 H 1.08005 * 119.99930 * 142.12527 * 4 3 2 6 6 C 1.38948 * 120.00078 * 322.12381 * 4 3 2 7 7 N 1.31406 * 120.00051 * 339.16456 * 6 4 3 8 8 Si 1.86804 * 119.99700 * 159.15687 * 6 4 3 9 9 H 1.48506 * 109.46830 * 60.00488 * 8 6 4 10 10 H 1.48503 * 109.46714 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47520 * 300.00433 * 8 6 4 12 12 C 1.34778 * 119.99914 * 93.02488 * 3 2 1 13 13 O 1.21292 * 120.00272 * 179.97438 * 12 3 2 14 14 C 1.50706 * 119.99774 * 0.02562 * 12 3 2 15 15 H 1.08998 * 115.55891 * 22.39424 * 14 12 3 16 16 C 1.52977 * 117.49088 * 168.06457 * 14 12 3 17 17 C 1.53104 * 117.49071 * 236.72923 * 14 12 3 18 18 C 1.52932 * 117.37825 * 145.22682 * 17 14 12 19 19 C 1.53068 * 109.67858 * 279.50970 * 18 17 14 20 20 S 1.81636 * 109.11858 * 299.76509 * 19 18 17 21 21 C 1.81852 * 102.41703 * 55.74956 * 20 19 18 22 22 C 1.52935 * 117.36593 * 359.76661 * 17 14 12 23 23 H 1.08998 * 109.47174 * 299.99265 * 1 2 3 24 24 H 1.08997 * 109.47251 * 59.99678 * 1 2 3 25 25 H 1.09005 * 109.46849 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47063 * 239.99962 * 2 1 3 27 27 H 1.09002 * 109.46828 * 120.00198 * 2 1 3 28 28 H 0.97002 * 120.00293 * 179.97438 * 7 6 4 29 29 H 1.08993 * 117.50010 * 0.02562 * 16 14 12 30 30 H 1.09004 * 117.51045 * 214.98555 * 16 14 12 31 31 H 1.09000 * 109.43243 * 159.44168 * 18 17 14 32 32 H 1.09006 * 109.40436 * 39.55542 * 18 17 14 33 33 H 1.08994 * 109.54485 * 59.68199 * 19 18 17 34 34 H 1.09002 * 109.54265 * 179.85225 * 19 18 17 35 35 H 1.09000 * 109.52536 * 184.38615 * 21 20 19 36 36 H 1.08998 * 109.58657 * 64.19970 * 21 20 19 37 37 H 1.09000 * 109.42990 * 200.56420 * 22 17 14 38 38 H 1.09002 * 109.43518 * 320.43276 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1877 2.0484 -1.1856 5 1 1.9453 3.0987 -1.2537 6 6 2.6715 1.3734 -2.2996 7 7 3.3409 0.2527 -2.1494 8 14 2.3699 2.0592 -4.0109 9 1 2.9786 3.4096 -4.1173 10 1 2.9828 1.1585 -5.0201 11 1 0.9084 2.1543 -4.2557 12 6 2.3009 1.9960 1.1656 13 8 2.7056 3.1395 1.1656 14 6 2.1153 1.2624 2.4689 15 1 2.1253 0.1745 2.4017 16 6 2.7085 1.8978 3.7276 17 6 1.1923 1.8977 3.5123 18 6 0.3604 0.9546 4.3826 19 6 -0.8761 0.4938 3.6069 20 16 -1.8761 1.9444 3.1652 21 6 -0.6850 2.9800 2.2620 22 6 0.5355 3.2307 3.1511 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.6783 -0.2187 -2.9272 29 1 3.2326 2.8465 3.6133 30 1 3.1087 1.2281 4.4890 31 1 0.0477 1.4768 5.2868 32 1 0.9622 0.0873 4.6544 33 1 -0.5654 -0.0247 2.7000 34 1 -1.4660 -0.1802 4.2282 35 1 -1.1507 3.9315 2.0053 36 1 -0.3737 2.4690 1.3510 37 1 0.2218 3.7391 4.0628 38 1 1.2516 3.8549 2.6166 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336244710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:45 Heat of formation + Delta-G solvation = -14.752632 kcal Electronic energy + Delta-G solvation = -19976.937023 eV Core-core repulsion = 17139.201919 eV Total energy + Delta-G solvation = -2837.735104 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.70331 -37.16615 -34.94839 -32.14841 -31.91223 -31.44601 -29.45948 -25.98243 -24.52029 -23.07109 -22.68419 -22.05813 -19.58970 -17.99740 -16.82694 -16.39391 -16.26352 -15.12868 -14.76557 -14.30489 -14.02404 -13.84977 -13.55214 -13.47618 -12.88751 -12.75544 -12.64786 -12.28823 -12.01202 -11.76232 -11.73293 -11.39365 -11.08817 -11.03309 -10.89597 -10.48662 -10.37082 -10.27580 -10.18496 -9.83426 -9.50191 -9.40491 -8.93604 -8.38347 -7.48784 -7.44531 -6.33297 -3.99748 2.00388 2.73970 3.16118 3.23883 3.27301 3.49229 4.11276 4.31267 4.64189 4.87287 4.95530 4.98295 5.15117 5.16235 5.30148 5.39144 5.53919 5.59426 5.73356 5.75323 5.79797 5.94739 6.02415 6.06166 6.08740 6.20391 6.25925 6.31396 6.37779 6.51826 6.58181 6.64689 6.90780 7.25902 7.57531 8.25803 8.50285 9.17796 9.39864 10.01992 10.69631 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.006828 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.515131 B = 4099.607561 C = 4359.633504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 N -0.433 5.433 4 C -0.308 4.308 5 H 0.089 0.911 6 C 0.039 3.961 7 N -0.869 5.869 8 Si 0.916 3.084 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.489 3.511 13 O -0.580 6.580 14 C -0.167 4.167 15 H 0.111 0.889 16 C -0.140 4.140 17 C -0.116 4.116 18 C -0.079 4.079 19 C -0.080 4.080 20 S -0.283 6.283 21 C -0.071 4.071 22 C -0.089 4.089 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.108 0.892 27 H 0.048 0.952 28 H 0.268 0.732 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.592 -2.378 9.873 12.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.030 4.030 3 N -0.151 5.151 4 C -0.436 4.436 5 H 0.107 0.893 6 C -0.166 4.166 7 N -0.507 5.507 8 Si 0.742 3.258 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.278 3.722 13 O -0.465 6.465 14 C -0.188 4.188 15 H 0.129 0.871 16 C -0.177 4.177 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.228 4.228 20 S -0.057 6.057 21 C -0.219 4.219 22 C -0.128 4.128 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.126 0.874 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.386 -1.773 9.912 12.487 hybrid contribution 1.162 -0.310 -1.232 1.722 sum -6.224 -2.082 8.679 10.881 Atomic orbital electron populations 1.22251 0.98004 1.00248 1.01775 1.21610 0.92095 0.85764 1.03522 1.43372 1.55482 1.11851 1.04430 1.19331 1.42484 0.96083 0.85701 0.89334 1.25358 0.94353 0.96604 1.00264 1.69887 1.31972 1.17804 1.31002 0.86169 0.78827 0.79027 0.81732 1.19739 1.20968 1.19871 1.19329 0.81287 0.87518 0.84108 1.90475 1.50261 1.18804 1.86929 1.22603 1.05464 0.99649 0.91079 0.87101 1.23022 0.93920 1.03135 0.97658 1.21501 0.92015 0.97412 1.00792 1.21270 0.94778 0.98246 0.97498 1.23408 0.98534 0.97169 1.03721 1.86521 1.23264 1.22359 1.73572 1.23455 0.96629 1.01165 1.00681 1.21348 0.96526 0.95523 0.99403 0.93545 0.92301 0.93304 0.87385 0.93372 0.92196 0.87690 0.88840 0.90394 0.90926 0.89306 0.88240 0.88308 0.88884 0.91110 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 10.22 37.16 0.38 -2.62 16 2 C 0.09 2.01 5.63 -4.04 -0.02 1.99 16 3 N -0.43 -10.65 2.52 -114.81 -0.29 -10.94 16 4 C -0.31 -8.37 8.89 -14.93 -0.13 -8.51 16 5 H 0.09 2.52 7.77 -52.48 -0.41 2.11 16 6 C 0.04 1.01 5.00 -17.47 -0.09 0.92 16 7 N -0.87 -23.23 11.41 55.50 0.63 -22.60 16 8 Si 0.92 20.49 29.60 -169.99 -5.03 15.46 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 12 C 0.49 11.50 5.96 -10.98 -0.07 11.44 16 13 O -0.58 -15.45 14.30 5.55 0.08 -15.37 16 14 C -0.17 -3.03 5.21 -91.73 -0.48 -3.51 16 15 H 0.11 1.90 6.03 -51.93 -0.31 1.59 16 16 C -0.14 -2.21 9.39 -26.67 -0.25 -2.46 16 17 C -0.12 -1.77 1.76 -154.45 -0.27 -2.04 16 18 C -0.08 -0.97 5.46 -26.73 -0.15 -1.11 16 19 C -0.08 -1.01 6.46 37.19 0.24 -0.77 16 20 S -0.28 -4.11 22.27 -107.50 -2.39 -6.51 16 21 C -0.07 -1.15 6.43 37.19 0.24 -0.92 16 22 C -0.09 -1.44 4.89 -26.73 -0.13 -1.57 16 23 H 0.05 0.81 4.78 -51.93 -0.25 0.56 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.11 2.57 5.50 -51.93 -0.29 2.28 16 27 H 0.05 0.93 5.73 -51.93 -0.30 0.63 16 28 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.10 1.83 7.72 -51.93 -0.40 1.43 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.09 1.20 6.25 -51.93 -0.32 0.88 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.09 1.75 5.92 -51.93 -0.31 1.44 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.10 1.92 5.98 -51.93 -0.31 1.61 16 LS Contribution 305.80 15.07 4.61 4.61 Total: -1.00 -29.20 305.80 -8.53 -37.73 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.41 Total: 6.77 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -0.73 Total: -9.15 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.34 Total: -33.54 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.08 Total: -15.37 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -2.39 Total: -6.51 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.20 -8.53 -37.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336244710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.978 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds