Wall clock time and date at job start Mon Mar 30 2020 00:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46714 * 2 1 4 4 C 1.37096 * 120.00188 * 273.02072 * 3 2 1 5 5 H 1.08005 * 119.99930 * 142.12527 * 4 3 2 6 6 C 1.38948 * 120.00078 * 322.12381 * 4 3 2 7 7 N 1.31406 * 120.00051 * 339.16456 * 6 4 3 8 8 Si 1.86804 * 119.99700 * 159.15687 * 6 4 3 9 9 H 1.48506 * 109.46830 * 60.00488 * 8 6 4 10 10 H 1.48503 * 109.46714 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47520 * 300.00433 * 8 6 4 12 12 C 1.34778 * 119.99914 * 93.02488 * 3 2 1 13 13 O 1.21292 * 120.00272 * 179.97438 * 12 3 2 14 14 C 1.50706 * 119.99774 * 0.02562 * 12 3 2 15 15 H 1.08998 * 115.55891 * 22.39424 * 14 12 3 16 16 C 1.52977 * 117.49088 * 168.06457 * 14 12 3 17 17 C 1.53104 * 117.49071 * 236.72923 * 14 12 3 18 18 C 1.52932 * 117.37825 * 145.22682 * 17 14 12 19 19 C 1.53068 * 109.67858 * 279.50970 * 18 17 14 20 20 S 1.81636 * 109.11858 * 299.76509 * 19 18 17 21 21 C 1.81852 * 102.41703 * 55.74956 * 20 19 18 22 22 C 1.52935 * 117.36593 * 359.76661 * 17 14 12 23 23 H 1.08998 * 109.47174 * 299.99265 * 1 2 3 24 24 H 1.08997 * 109.47251 * 59.99678 * 1 2 3 25 25 H 1.09005 * 109.46849 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47063 * 239.99962 * 2 1 3 27 27 H 1.09002 * 109.46828 * 120.00198 * 2 1 3 28 28 H 0.97002 * 120.00293 * 179.97438 * 7 6 4 29 29 H 1.08993 * 117.50010 * 0.02562 * 16 14 12 30 30 H 1.09004 * 117.51045 * 214.98555 * 16 14 12 31 31 H 1.09000 * 109.43243 * 159.44168 * 18 17 14 32 32 H 1.09006 * 109.40436 * 39.55542 * 18 17 14 33 33 H 1.08994 * 109.54485 * 59.68199 * 19 18 17 34 34 H 1.09002 * 109.54265 * 179.85225 * 19 18 17 35 35 H 1.09000 * 109.52536 * 184.38615 * 21 20 19 36 36 H 1.08998 * 109.58657 * 64.19970 * 21 20 19 37 37 H 1.09000 * 109.42990 * 200.56420 * 22 17 14 38 38 H 1.09002 * 109.43518 * 320.43276 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1877 2.0484 -1.1856 5 1 1.9453 3.0987 -1.2537 6 6 2.6715 1.3734 -2.2996 7 7 3.3409 0.2527 -2.1494 8 14 2.3699 2.0592 -4.0109 9 1 2.9786 3.4096 -4.1173 10 1 2.9828 1.1585 -5.0201 11 1 0.9084 2.1543 -4.2557 12 6 2.3009 1.9960 1.1656 13 8 2.7056 3.1395 1.1656 14 6 2.1153 1.2624 2.4689 15 1 2.1253 0.1745 2.4017 16 6 2.7085 1.8978 3.7276 17 6 1.1923 1.8977 3.5123 18 6 0.3604 0.9546 4.3826 19 6 -0.8761 0.4938 3.6069 20 16 -1.8761 1.9444 3.1652 21 6 -0.6850 2.9800 2.2620 22 6 0.5355 3.2307 3.1511 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.6783 -0.2187 -2.9272 29 1 3.2326 2.8465 3.6133 30 1 3.1087 1.2281 4.4890 31 1 0.0477 1.4768 5.2868 32 1 0.9622 0.0873 4.6544 33 1 -0.5654 -0.0247 2.7000 34 1 -1.4660 -0.1802 4.2282 35 1 -1.1507 3.9315 2.0053 36 1 -0.3737 2.4690 1.3510 37 1 0.2218 3.7391 4.0628 38 1 1.2516 3.8549 2.6166 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336244710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:45 Heat of formation + Delta-G solvation = -30.575915 kcal Electronic energy + Delta-G solvation = -19977.623172 eV Core-core repulsion = 17139.201919 eV Total energy + Delta-G solvation = -2838.421253 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.24362 -38.74660 -36.81001 -33.97796 -33.30367 -32.58290 -31.17685 -27.76843 -25.92739 -24.34125 -24.08243 -23.71203 -21.00299 -19.54263 -18.65294 -18.06274 -17.53598 -17.01360 -16.17599 -15.79394 -15.43927 -15.39199 -14.88521 -14.82552 -14.41548 -14.30430 -13.85546 -13.65833 -13.57395 -13.41863 -13.13533 -12.87749 -12.78132 -12.59889 -12.33430 -12.23483 -12.10741 -11.82538 -11.41382 -11.25092 -10.95419 -10.77188 -10.55147 -10.23612 -9.38567 -8.63290 -8.33116 -6.07157 0.86731 1.35382 1.38460 1.47974 1.60499 1.88644 2.27220 2.79827 3.02303 3.10377 3.67934 3.74757 3.80959 3.89123 4.03476 4.16328 4.21949 4.32107 4.41407 4.51359 4.58983 4.63547 4.68896 4.81271 4.86134 4.88814 4.98747 5.00453 5.05016 5.15813 5.21308 5.31185 5.38332 5.45354 5.60270 6.22500 6.56891 7.20494 7.51073 8.12928 8.67993 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.006828 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.515131 B = 4099.607561 C = 4359.633504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.095 3.905 3 N -0.448 5.448 4 C -0.338 4.338 5 H 0.059 0.941 6 C 0.005 3.995 7 N -0.888 5.888 8 Si 0.975 3.025 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.266 1.266 12 C 0.481 3.519 13 O -0.626 6.626 14 C -0.186 4.186 15 H 0.127 0.873 16 C -0.131 4.131 17 C -0.095 4.095 18 C -0.073 4.073 19 C -0.078 4.078 20 S -0.280 6.280 21 C -0.071 4.071 22 C -0.089 4.089 23 H 0.054 0.946 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.273 0.727 29 H 0.080 0.920 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.726 -4.282 11.756 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 N -0.166 5.166 4 C -0.466 4.466 5 H 0.077 0.923 6 C -0.197 4.197 7 N -0.526 5.526 8 Si 0.799 3.201 9 H -0.204 1.204 10 H -0.196 1.196 11 H -0.191 1.191 12 C 0.271 3.729 13 O -0.513 6.513 14 C -0.207 4.207 15 H 0.145 0.855 16 C -0.168 4.168 17 C -0.097 4.097 18 C -0.111 4.111 19 C -0.226 4.226 20 S -0.054 6.054 21 C -0.220 4.220 22 C -0.127 4.127 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.151 0.849 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.149 0.851 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.532 -3.705 11.799 15.025 hybrid contribution 1.528 0.314 -1.776 2.364 sum -7.004 -3.391 10.023 12.689 Atomic orbital electron populations 1.22120 0.95669 1.02080 1.01073 1.21665 0.93974 0.83927 1.03228 1.43599 1.55943 1.12925 1.04135 1.19239 1.44069 0.95455 0.87841 0.92312 1.26031 0.93678 0.96892 1.03142 1.69955 1.32097 1.18498 1.32054 0.85288 0.79019 0.78123 0.77712 1.20390 1.19562 1.19051 1.20186 0.79821 0.87154 0.85707 1.90438 1.52005 1.20938 1.87920 1.22442 1.09361 0.99832 0.89065 0.85487 1.23138 0.94421 1.02492 0.96738 1.21645 0.92205 0.96927 0.98874 1.21331 0.94252 0.98530 0.97003 1.23559 0.98768 0.96270 1.04019 1.86521 1.23010 1.23034 1.72874 1.23290 0.97377 1.01534 0.99766 1.21306 0.95701 0.96035 0.99696 0.92719 0.94572 0.90009 0.89872 0.91250 0.91766 0.90128 0.84857 0.88541 0.88101 0.90064 0.85090 0.88430 0.92131 0.89016 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 10.22 71.98 0.74 -4.67 16 2 C 0.10 4.07 5.63 86.38 0.49 4.55 16 3 N -0.45 -22.78 2.52 -635.53 -1.60 -24.38 16 4 C -0.34 -19.25 8.89 84.04 0.75 -18.51 16 5 H 0.06 3.60 7.77 -2.91 -0.02 3.58 16 6 C 0.01 0.28 5.00 84.93 0.42 0.70 16 7 N -0.89 -48.22 11.41 21.66 0.25 -47.97 16 8 Si 0.97 42.92 29.60 68.60 2.03 44.95 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 11 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 12 C 0.48 23.37 5.96 87.66 0.52 23.90 16 13 O -0.63 -35.31 14.30 -3.07 -0.04 -35.35 16 14 C -0.19 -6.57 5.21 -11.51 -0.06 -6.63 16 15 H 0.13 4.03 6.03 -2.39 -0.01 4.02 16 16 C -0.13 -3.87 9.39 30.63 0.29 -3.58 16 17 C -0.10 -2.70 1.76 -52.15 -0.09 -2.79 16 18 C -0.07 -1.43 5.46 30.59 0.17 -1.27 16 19 C -0.08 -1.64 6.46 72.00 0.47 -1.18 16 20 S -0.28 -7.49 22.27 -56.49 -1.26 -8.75 16 21 C -0.07 -2.32 6.43 72.00 0.46 -1.86 16 22 C -0.09 -2.83 4.89 30.59 0.15 -2.68 16 23 H 0.05 1.85 4.78 -2.39 -0.01 1.84 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 26 H 0.08 4.00 5.50 -2.39 -0.01 3.99 16 27 H 0.07 2.60 5.73 -2.39 -0.01 2.59 16 28 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 29 H 0.08 2.81 7.72 -2.39 -0.02 2.80 16 30 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.10 1.54 8.08 -2.38 -0.02 1.52 16 33 H 0.08 1.88 6.25 -2.39 -0.01 1.87 16 34 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.06 2.35 5.92 -2.39 -0.01 2.34 16 37 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16 38 H 0.06 2.47 5.98 -2.39 -0.01 2.46 16 Total: -1.00 -67.26 305.80 4.73 -62.53 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 1.06 Total: 22.99 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 4.30 Total: -14.01 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -1.35 Total: -72.35 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.04 Total: -35.35 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -1.26 Total: -8.75 kcal Total: -67.26 4.73 -62.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336244710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.951 kcal (2) G-P(sol) polarization free energy of solvation -67.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds