Wall clock time and date at job start Mon Mar 30 2020 01:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00263 * 2 1 4 4 H 1.48495 * 109.47219 * 270.00739 * 3 2 1 5 5 H 1.48500 * 109.46731 * 30.00569 * 3 2 1 6 6 H 1.48500 * 109.47267 * 150.00012 * 3 2 1 7 7 C 1.37877 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00427 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99963 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47332 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47133 * 179.97438 * 10 9 7 12 12 C 1.31476 * 119.99710 * 114.21561 * 11 10 9 13 13 C 1.41888 * 120.88130 * 353.60160 * 12 11 10 14 14 C 1.35836 * 118.82503 * 180.02562 * 13 12 11 15 15 N 1.33403 * 120.57965 * 359.97438 * 14 13 12 16 16 C 1.31434 * 121.94438 * 0.02562 * 15 14 13 17 17 C 1.47730 * 119.42193 * 179.97438 * 16 15 14 18 18 C 1.39636 * 120.14936 * 359.97438 * 17 16 15 19 19 C 1.37940 * 119.84241 * 179.97438 * 18 17 16 20 20 C 1.38369 * 120.15583 * 0.02562 * 19 18 17 21 21 C 1.38369 * 120.30050 * 0.02562 * 20 19 18 22 22 C 1.37943 * 120.15538 * 359.97438 * 21 20 19 23 23 N 1.36668 * 121.15092 * 0.25316 * 16 15 14 24 24 H 0.97010 * 120.37157 * 179.71915 * 23 16 15 25 25 H 0.97000 * 119.99871 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47562 * 60.00036 * 9 7 2 27 27 H 1.09010 * 109.46705 * 299.99878 * 9 7 2 28 28 H 1.08997 * 109.47228 * 59.99855 * 10 9 7 29 29 H 1.09004 * 109.46488 * 299.99718 * 10 9 7 30 30 H 1.08003 * 120.58683 * 0.02562 * 13 12 11 31 31 H 1.08001 * 119.71076 * 179.97438 * 14 13 12 32 32 H 1.08004 * 120.07730 * 359.70513 * 18 17 16 33 33 H 1.08003 * 119.92048 * 180.02562 * 19 18 17 34 34 H 1.07993 * 119.85013 * 180.02562 * 20 19 18 35 35 H 1.08003 * 119.92520 * 180.02562 * 21 20 19 36 36 H 1.07993 * 120.08163 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9309 0.0001 12 6 1.5881 -5.7339 -1.0382 13 6 2.2615 -5.3335 -2.2212 14 6 2.3136 -6.1963 -3.2690 15 7 1.7423 -7.3990 -3.1869 16 6 1.1120 -7.7971 -2.1044 17 6 0.4988 -9.1408 -2.0744 18 6 0.5893 -9.9780 -3.1883 19 6 0.0148 -11.2316 -3.1532 20 6 -0.6503 -11.6599 -2.0180 21 6 -0.7447 -10.8349 -0.9111 22 6 -0.1749 -9.5788 -0.9325 23 7 1.0092 -6.9875 -1.0082 24 1 0.5379 -7.2912 -0.2166 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5568 -0.8902 27 1 0.6247 -2.5570 0.8898 28 1 2.8719 -3.6044 0.8894 29 1 2.8718 -3.6043 -0.8906 30 1 2.7244 -4.3600 -2.2873 31 1 2.8221 -5.9061 -4.1766 32 1 1.1041 -9.6431 -4.0767 33 1 0.0844 -11.8804 -4.0138 34 1 -1.0979 -12.6424 -1.9957 35 1 -1.2649 -11.1755 -0.0281 36 1 -0.2489 -8.9361 -0.0678 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343596258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:45 Heat of formation + Delta-G solvation = 87.440854 kcal Electronic energy + Delta-G solvation = -18677.558265 eV Core-core repulsion = 15741.103403 eV Total energy + Delta-G solvation = -2936.454862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88788 -39.07906 -35.81195 -34.30229 -33.19511 -31.87980 -31.26275 -29.89106 -28.52921 -25.16085 -24.75442 -23.25442 -22.38068 -21.59748 -20.00838 -18.59057 -17.25005 -17.17097 -16.49315 -15.99805 -15.15679 -15.01906 -14.94981 -14.46691 -14.25949 -13.88261 -13.66095 -13.19025 -12.89542 -12.62669 -12.28669 -11.72867 -11.72186 -11.43684 -11.15225 -10.95594 -10.71837 -10.42114 -10.15247 -9.78045 -9.61392 -9.33065 -9.19487 -8.97690 -8.56421 -8.30991 -7.09592 -5.98196 -4.01838 0.21842 1.04102 1.42170 2.29746 2.71722 3.32780 3.38635 3.40629 3.42565 3.83039 3.96449 4.43799 4.46712 4.57817 4.74043 4.80069 5.01312 5.11354 5.17723 5.36992 5.37379 5.49084 5.53813 5.67957 5.97035 6.03427 6.11544 6.12346 6.24005 6.35642 6.53569 6.66141 6.86732 7.01839 7.21571 7.71019 7.83340 8.01944 8.02820 8.39126 8.58113 9.05569 9.61885 11.12995 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042293 B = 0.003148 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.887306 B = 8891.388385 C = 9236.546037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.031 3.969 10 C 0.068 3.932 11 N -0.584 5.584 12 C 0.369 3.631 13 C -0.243 4.243 14 C 0.112 3.888 15 N -0.549 5.549 16 C 0.440 3.560 17 C -0.062 4.062 18 C -0.056 4.056 19 C -0.128 4.128 20 C -0.098 4.098 21 C -0.122 4.122 22 C -0.094 4.094 23 N -0.617 5.617 24 H 0.414 0.586 25 H 0.261 0.739 26 H 0.012 0.988 27 H 0.023 0.977 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.144 0.856 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 -24.712 -6.251 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.006 4.006 10 C -0.061 4.061 11 N -0.309 5.309 12 C 0.097 3.903 13 C -0.270 4.270 14 C -0.025 4.025 15 N -0.273 5.273 16 C 0.176 3.824 17 C -0.064 4.064 18 C -0.076 4.076 19 C -0.146 4.146 20 C -0.117 4.117 21 C -0.140 4.140 22 C -0.114 4.114 23 N -0.243 5.243 24 H 0.253 0.747 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.171 0.829 31 H 0.175 0.825 32 H 0.162 0.838 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.246 -24.631 -6.132 25.384 hybrid contribution 0.563 1.839 0.355 1.955 sum 0.317 -22.792 -5.777 23.515 Atomic orbital electron populations 1.69984 1.06103 1.26603 1.50554 1.25020 0.94845 0.99261 0.95255 0.86564 0.79831 0.83343 0.78090 1.20644 1.21172 1.19817 1.21191 0.93014 0.90893 1.51018 0.92597 1.19082 0.93894 0.90019 0.97638 1.22307 0.96608 0.87554 0.99623 1.72275 1.25361 1.08090 1.25136 1.18873 0.92730 0.85734 0.92926 1.22678 1.06376 1.03604 0.94325 1.22038 0.94184 0.87979 0.98268 1.68100 1.17591 1.19289 1.22332 1.20902 0.89642 0.89408 0.82428 1.18240 1.01379 0.90649 0.96167 1.21376 0.96132 0.92461 0.97606 1.21204 0.98500 0.96192 0.98654 1.21398 0.97503 0.99678 0.93146 1.21059 1.00160 0.93731 0.99059 1.21258 0.96482 0.96725 0.96906 1.42746 1.51480 1.13379 1.16705 0.74667 0.92973 0.96943 0.95907 0.91281 0.94701 0.82860 0.82529 0.83822 0.85195 0.85559 0.85199 0.85596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.80 13.29 55.43 0.74 -27.07 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.34 9.11 -34.44 -0.31 -15.66 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.88 5.30 -27.88 -0.15 0.73 16 10 C 0.07 1.59 6.14 -4.04 -0.02 1.56 16 11 N -0.58 -12.57 10.68 -60.07 -0.64 -13.21 16 12 C 0.37 6.76 7.72 -155.61 -1.20 5.56 16 13 C -0.24 -4.12 9.24 -39.05 -0.36 -4.48 16 14 C 0.11 1.60 11.15 -17.73 -0.20 1.41 16 15 N -0.55 -7.68 9.38 -11.07 -0.10 -7.78 16 16 C 0.44 5.81 7.64 -154.53 -1.18 4.63 16 17 C -0.06 -0.64 5.87 -104.97 -0.62 -1.26 16 18 C -0.06 -0.50 9.57 -39.17 -0.37 -0.88 16 19 C -0.13 -0.88 10.03 -39.64 -0.40 -1.28 16 20 C -0.10 -0.62 10.04 -39.48 -0.40 -1.02 16 21 C -0.12 -0.84 10.03 -39.64 -0.40 -1.24 16 22 C -0.09 -0.80 9.54 -39.17 -0.37 -1.18 16 23 N -0.62 -8.97 5.41 -9.77 -0.05 -9.02 16 24 H 0.41 5.13 6.85 -40.82 -0.28 4.85 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.02 0.69 8.14 -51.92 -0.42 0.26 16 28 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 29 H 0.03 0.76 5.31 -51.93 -0.28 0.49 16 30 H 0.15 2.67 5.89 -52.48 -0.31 2.36 16 31 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.14 1.27 7.52 -52.48 -0.39 0.87 16 33 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 34 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.13 0.92 6.37 -52.49 -0.33 0.59 16 LS Contribution 311.10 15.07 4.69 4.69 Total: -1.00 -34.63 311.10 -10.57 -45.20 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.09 Total: 1.59 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -6.08 Total: -11.48 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.06 Total: -57.08 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.63 -10.57 -45.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343596258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.641 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds