Wall clock time and date at job start Mon Mar 30 2020 01:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00263 * 2 1 4 4 H 1.48495 * 109.47219 * 270.00739 * 3 2 1 5 5 H 1.48500 * 109.46731 * 30.00569 * 3 2 1 6 6 H 1.48500 * 109.47267 * 150.00012 * 3 2 1 7 7 C 1.37877 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00427 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99963 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47332 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47133 * 179.97438 * 10 9 7 12 12 C 1.31476 * 119.99710 * 114.21561 * 11 10 9 13 13 C 1.41888 * 120.88130 * 353.60160 * 12 11 10 14 14 C 1.35836 * 118.82503 * 180.02562 * 13 12 11 15 15 N 1.33403 * 120.57965 * 359.97438 * 14 13 12 16 16 C 1.31434 * 121.94438 * 0.02562 * 15 14 13 17 17 C 1.47730 * 119.42193 * 179.97438 * 16 15 14 18 18 C 1.39636 * 120.14936 * 359.97438 * 17 16 15 19 19 C 1.37940 * 119.84241 * 179.97438 * 18 17 16 20 20 C 1.38369 * 120.15583 * 0.02562 * 19 18 17 21 21 C 1.38369 * 120.30050 * 0.02562 * 20 19 18 22 22 C 1.37943 * 120.15538 * 359.97438 * 21 20 19 23 23 N 1.36668 * 121.15092 * 0.25316 * 16 15 14 24 24 H 0.97010 * 120.37157 * 179.71915 * 23 16 15 25 25 H 0.97000 * 119.99871 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47562 * 60.00036 * 9 7 2 27 27 H 1.09010 * 109.46705 * 299.99878 * 9 7 2 28 28 H 1.08997 * 109.47228 * 59.99855 * 10 9 7 29 29 H 1.09004 * 109.46488 * 299.99718 * 10 9 7 30 30 H 1.08003 * 120.58683 * 0.02562 * 13 12 11 31 31 H 1.08001 * 119.71076 * 179.97438 * 14 13 12 32 32 H 1.08004 * 120.07730 * 359.70513 * 18 17 16 33 33 H 1.08003 * 119.92048 * 180.02562 * 19 18 17 34 34 H 1.07993 * 119.85013 * 180.02562 * 20 19 18 35 35 H 1.08003 * 119.92520 * 180.02562 * 21 20 19 36 36 H 1.07993 * 120.08163 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9309 0.0001 12 6 1.5881 -5.7339 -1.0382 13 6 2.2615 -5.3335 -2.2212 14 6 2.3136 -6.1963 -3.2690 15 7 1.7423 -7.3990 -3.1869 16 6 1.1120 -7.7971 -2.1044 17 6 0.4988 -9.1408 -2.0744 18 6 0.5893 -9.9780 -3.1883 19 6 0.0148 -11.2316 -3.1532 20 6 -0.6503 -11.6599 -2.0180 21 6 -0.7447 -10.8349 -0.9111 22 6 -0.1749 -9.5788 -0.9325 23 7 1.0092 -6.9875 -1.0082 24 1 0.5379 -7.2912 -0.2166 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5568 -0.8902 27 1 0.6247 -2.5570 0.8898 28 1 2.8719 -3.6044 0.8894 29 1 2.8718 -3.6043 -0.8906 30 1 2.7244 -4.3600 -2.2873 31 1 2.8221 -5.9061 -4.1766 32 1 1.1041 -9.6431 -4.0767 33 1 0.0844 -11.8804 -4.0138 34 1 -1.0979 -12.6424 -1.9957 35 1 -1.2649 -11.1755 -0.0281 36 1 -0.2489 -8.9361 -0.0678 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343596258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:44 Heat of formation + Delta-G solvation = 65.555538 kcal Electronic energy + Delta-G solvation = -18678.507283 eV Core-core repulsion = 15741.103403 eV Total energy + Delta-G solvation = -2937.403880 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.05465 -39.81157 -37.33983 -35.63557 -35.07136 -33.22237 -31.92005 -31.26624 -30.03459 -26.91331 -25.95668 -24.48968 -23.13089 -23.07306 -21.46909 -19.78577 -18.64821 -18.44684 -18.02015 -17.05750 -16.59136 -16.26563 -16.18043 -15.68259 -15.32296 -15.06535 -14.80640 -14.32355 -14.30786 -13.91454 -13.71318 -13.53127 -12.98471 -12.80688 -12.42429 -12.33478 -12.14789 -12.01937 -11.89505 -11.45012 -11.35954 -10.99835 -10.63600 -10.12649 -9.92489 -9.83682 -8.53390 -8.23305 -6.38729 -0.73063 0.42289 0.46626 1.06267 1.37260 1.40618 1.47822 1.52404 2.37863 2.53721 2.84216 2.94229 3.07710 3.52817 3.83195 3.93816 3.96672 4.09228 4.21319 4.30920 4.44327 4.50807 4.57923 4.72032 4.80719 4.86291 4.98667 5.09066 5.15049 5.38938 5.42630 5.47161 5.48637 5.56097 5.65096 5.73610 5.92950 5.99410 6.16830 6.76545 6.83399 7.06132 7.31506 8.88025 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042293 B = 0.003148 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.887306 B = 8891.388385 C = 9236.546037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.976 3.024 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.043 3.957 10 C 0.087 3.913 11 N -0.638 5.638 12 C 0.383 3.617 13 C -0.298 4.298 14 C 0.150 3.850 15 N -0.560 5.560 16 C 0.451 3.549 17 C -0.092 4.092 18 C -0.061 4.061 19 C -0.128 4.128 20 C -0.087 4.087 21 C -0.125 4.125 22 C -0.100 4.100 23 N -0.609 5.609 24 H 0.424 0.576 25 H 0.265 0.735 26 H -0.022 1.022 27 H -0.016 1.016 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.142 0.858 31 H 0.192 0.808 32 H 0.142 0.858 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.427 -27.036 -7.462 28.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.005 3.995 10 C -0.042 4.042 11 N -0.366 5.366 12 C 0.113 3.887 13 C -0.325 4.325 14 C 0.012 3.988 15 N -0.284 5.284 16 C 0.189 3.811 17 C -0.095 4.095 18 C -0.081 4.081 19 C -0.145 4.145 20 C -0.105 4.105 21 C -0.143 4.143 22 C -0.120 4.120 23 N -0.233 5.233 24 H 0.265 0.735 25 H 0.074 0.926 26 H -0.004 1.004 27 H 0.003 0.997 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.159 0.841 31 H 0.209 0.791 32 H 0.159 0.841 33 H 0.174 0.826 34 H 0.176 0.824 35 H 0.172 0.828 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.131 -27.029 -7.342 28.009 hybrid contribution 0.306 2.163 0.591 2.263 sum 0.438 -24.866 -6.751 25.770 Atomic orbital electron populations 1.70142 1.08158 1.27993 1.51234 1.26108 0.95828 1.03800 0.94279 0.85296 0.78560 0.77530 0.78730 1.19358 1.20534 1.18416 1.21603 0.93689 0.91789 1.51320 0.91584 1.18876 0.94056 0.92503 0.94026 1.21851 0.95320 0.87298 0.99776 1.72224 1.28737 1.08401 1.27226 1.19166 0.91029 0.85959 0.92536 1.22543 1.10205 1.04489 0.95310 1.22567 0.91155 0.86939 0.98153 1.68268 1.18479 1.19031 1.22589 1.21658 0.88001 0.90074 0.81345 1.18292 1.03663 0.89582 0.97940 1.21493 0.96354 0.93232 0.96995 1.21536 0.97612 0.95496 0.99899 1.21852 0.95774 1.00654 0.92221 1.21410 0.99632 0.92924 1.00330 1.21446 0.96284 0.97757 0.96478 1.42852 1.50437 1.12294 1.17727 0.73541 0.92622 1.00368 0.99717 0.91908 0.93720 0.84064 0.79140 0.84055 0.82557 0.82417 0.82828 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.19 13.29 21.45 0.28 -59.90 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.98 45.87 29.54 68.60 2.03 47.89 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.55 -33.22 9.11 25.60 0.23 -32.98 16 8 H 0.07 3.79 7.74 -2.91 -0.02 3.76 16 9 C 0.04 2.58 5.30 29.85 0.16 2.74 16 10 C 0.09 4.33 6.14 86.38 0.53 4.86 16 11 N -0.64 -29.10 10.68 -343.96 -3.67 -32.78 16 12 C 0.38 14.59 7.72 134.33 1.04 15.62 16 13 C -0.30 -10.39 9.24 22.62 0.21 -10.18 16 14 C 0.15 4.16 11.15 83.90 0.94 5.10 16 15 N -0.56 -14.98 9.38 -188.93 -1.77 -16.76 16 16 C 0.45 11.59 7.64 136.43 1.04 12.63 16 17 C -0.09 -1.78 5.87 -20.09 -0.12 -1.90 16 18 C -0.06 -0.96 9.57 22.54 0.22 -0.74 16 19 C -0.13 -1.30 10.03 22.23 0.22 -1.08 16 20 C -0.09 -0.73 10.04 22.33 0.22 -0.51 16 21 C -0.13 -1.32 10.03 22.23 0.22 -1.10 16 22 C -0.10 -1.53 9.54 22.54 0.22 -1.31 16 23 N -0.61 -17.88 5.41 -184.82 -1.00 -18.88 16 24 H 0.42 10.66 6.85 -92.70 -0.64 10.02 16 25 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 26 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 27 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 28 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.04 2.08 5.31 -2.38 -0.01 2.06 16 30 H 0.14 5.20 5.89 -2.91 -0.02 5.18 16 31 H 0.19 3.86 8.06 -2.91 -0.02 3.84 16 32 H 0.14 2.23 7.52 -2.91 -0.02 2.21 16 33 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.16 0.39 8.06 -2.91 -0.02 0.36 16 35 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 36 H 0.13 1.77 6.37 -2.91 -0.02 1.76 16 Total: -1.00 -78.78 311.10 1.93 -76.85 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.47 Total: 12.09 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 5.59 Total: -8.52 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -6.16 Total: -128.32 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -78.78 1.93 -76.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343596258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.410 kcal (2) G-P(sol) polarization free energy of solvation -78.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds