Wall clock time and date at job start Mon Mar 30 2020 01:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 F 1.39898 * 109.45182 * 32.06839 * 3 2 1 5 5 C 1.53044 * 109.45865 * 152.03647 * 3 2 1 6 6 C 1.53194 * 109.31482 * 58.65164 * 5 3 2 7 7 N 1.46929 * 108.76910 * 54.63716 * 6 5 3 8 8 C 1.34778 * 120.62399 * 126.37392 * 7 6 5 9 9 O 1.21588 * 119.99556 * 185.21700 * 8 7 6 10 10 N 1.34777 * 120.00397 * 4.94351 * 8 7 6 11 11 C 1.46499 * 119.99984 * 175.29922 * 10 8 7 12 12 C 1.52995 * 109.47059 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.47197 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00086 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99747 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99674 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 120.00280 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.47271 * 90.00148 * 17 15 13 19 19 H 1.48508 * 109.47397 * 209.99939 * 17 15 13 20 20 H 1.48496 * 109.47551 * 330.00178 * 17 15 13 21 21 C 1.46919 * 118.74318 * 306.64182 * 7 6 5 22 22 C 1.52761 * 109.00762 * 53.31078 * 21 7 6 23 23 H 1.09003 * 109.49563 * 298.70296 * 5 3 2 24 24 H 1.09004 * 109.50143 * 178.60988 * 5 3 2 25 25 H 1.09003 * 109.58522 * 294.85233 * 6 5 3 26 26 H 1.08997 * 109.58767 * 174.42413 * 6 5 3 27 27 H 0.96995 * 119.99730 * 355.29599 * 10 8 7 28 28 H 1.09001 * 109.46878 * 299.99465 * 11 10 8 29 29 H 1.08999 * 109.47612 * 59.99688 * 11 10 8 30 30 H 1.09006 * 109.47199 * 299.99915 * 12 11 10 31 31 H 1.08998 * 109.47513 * 59.99776 * 12 11 10 32 32 H 0.97003 * 119.99805 * 180.02562 * 16 15 13 33 33 H 1.08993 * 109.58844 * 173.15036 * 21 7 6 34 34 H 1.09008 * 109.58494 * 293.57135 * 21 7 6 35 35 H 1.09004 * 109.56659 * 185.55536 * 22 21 7 36 36 H 1.08994 * 109.38396 * 65.51818 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 9 3.0743 -1.1170 -0.7004 5 6 3.1172 1.2754 -0.6766 6 6 2.5763 2.4974 0.0724 7 7 2.9394 2.3811 1.4913 8 6 3.5927 3.3802 2.1170 9 8 3.9714 3.2348 3.2632 10 7 3.8312 4.5383 1.4703 11 6 4.4489 5.6605 2.1812 12 6 4.6081 6.8443 1.2252 13 6 5.2429 7.9989 1.9567 14 1 5.5067 7.8983 2.9990 15 6 5.4877 9.1834 1.2947 16 7 6.0421 10.1909 1.9330 17 14 5.0320 9.3573 -0.5084 18 1 3.6427 9.8699 -0.6207 19 1 5.9649 10.3078 -1.1654 20 1 5.1259 8.0325 -1.1727 21 6 2.5820 1.1526 2.2136 22 6 3.1179 -0.0520 1.4420 23 1 2.7731 1.3008 -1.7106 24 1 4.2069 1.2884 -0.6551 25 1 1.4913 2.5351 -0.0253 26 1 3.0144 3.4045 -0.3438 27 1 3.5940 4.6288 0.5341 28 1 3.8158 5.9524 3.0191 29 1 5.4284 5.3601 2.5533 30 1 5.2414 6.5522 0.3874 31 1 3.6288 7.1449 0.8528 32 1 6.2141 11.0243 1.4674 33 1 3.0238 1.1728 3.2098 34 1 1.4974 1.0785 2.2941 35 1 2.7742 -0.9714 1.9160 36 1 4.2075 -0.0271 1.4437 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345932185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:43 Heat of formation + Delta-G solvation = -44.049238 kcal Electronic energy + Delta-G solvation = -20340.750821 eV Core-core repulsion = 16967.824896 eV Total energy + Delta-G solvation = -3372.925925 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.128 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.52955 -40.50167 -38.22820 -36.35773 -35.12283 -33.21095 -32.53295 -31.78874 -29.94695 -26.22454 -24.81219 -23.91363 -22.77577 -20.91631 -20.15656 -18.46376 -18.02850 -16.97574 -16.43452 -16.22777 -16.00991 -15.69099 -14.77568 -14.57493 -14.48568 -14.16946 -13.93816 -13.62209 -13.49225 -13.21360 -13.02651 -12.81589 -12.73672 -12.64150 -12.58919 -11.88784 -11.58031 -11.46224 -11.24487 -11.02984 -10.43206 -10.31747 -10.00442 -9.83028 -9.35765 -9.02672 -8.65240 -8.46433 -6.13220 -4.13491 2.06603 2.07847 2.55956 2.92655 3.22899 3.29860 3.30176 3.31577 3.65219 3.85496 3.93381 4.12366 4.35223 4.39932 4.69011 4.84040 4.92616 5.04748 5.19610 5.19772 5.22686 5.41195 5.48240 5.58559 5.98082 6.19909 6.25759 6.53576 6.71808 6.82360 6.84381 7.16710 7.20503 7.64355 8.08166 8.42132 8.73730 8.91522 9.46698 10.99836 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.031233 B = 0.003835 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.266527 B = 7299.881322 C = 7750.009663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C 0.181 3.819 3 C 0.234 3.766 4 F -0.180 7.180 5 C -0.152 4.152 6 C 0.110 3.890 7 N -0.638 5.638 8 C 0.706 3.294 9 O -0.586 6.586 10 N -0.740 5.740 11 C 0.146 3.854 12 C -0.021 4.021 13 C -0.523 4.523 14 H 0.076 0.924 15 C 0.069 3.931 16 N -0.898 5.898 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.266 1.266 21 C 0.129 3.871 22 C -0.151 4.151 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.391 0.609 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.022 0.978 31 H 0.017 0.983 32 H 0.265 0.735 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.372 -21.003 -7.032 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.062 5.062 2 C -0.139 4.139 3 C 0.212 3.788 4 F -0.160 7.160 5 C -0.191 4.191 6 C -0.014 4.014 7 N -0.377 5.377 8 C 0.408 3.592 9 O -0.464 6.464 10 N -0.396 5.396 11 C 0.024 3.976 12 C -0.059 4.059 13 C -0.561 4.561 14 H 0.094 0.906 15 C -0.133 4.133 16 N -0.536 5.536 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 C 0.005 3.995 22 C -0.190 4.190 23 H 0.117 0.883 24 H 0.125 0.875 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.226 0.774 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.727 -20.889 -6.189 23.116 hybrid contribution 0.053 0.143 -1.629 1.636 sum -7.674 -20.746 -7.818 23.461 Atomic orbital electron populations 1.81228 1.12396 1.05946 1.06605 1.29334 0.95213 0.94810 0.94545 1.18122 0.80748 0.85391 0.94523 1.92993 1.88642 1.53809 1.80546 1.22607 1.04161 0.91690 1.00657 1.21595 1.00480 0.98147 0.81213 1.47299 1.62169 1.17786 1.10455 1.15880 0.78516 0.80208 0.84622 1.90911 1.57071 1.81307 1.17115 1.45716 1.66322 1.13094 1.14470 1.21422 0.97000 0.83759 0.95426 1.19796 0.96952 0.93491 0.95692 1.20905 1.40506 0.95592 0.99115 0.90555 1.25000 0.94482 0.95620 0.98165 1.69905 1.43039 1.03810 1.36863 0.86753 0.78542 0.78220 0.85536 1.20249 1.21264 1.19119 1.21292 0.99621 0.81075 0.97480 1.22558 1.04171 1.01019 0.91301 0.88259 0.87486 0.91078 0.88434 0.77394 0.92110 0.91880 0.96019 0.96517 0.92528 0.86958 0.91736 0.88351 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.37 18.54 42.15 0.78 -3.59 16 2 C 0.18 1.62 11.90 -20.76 -0.25 1.37 16 3 C 0.23 1.62 1.38 -93.36 -0.13 1.49 16 4 F -0.18 -1.39 16.77 2.25 0.04 -1.35 16 5 C -0.15 -0.90 5.34 -26.61 -0.14 -1.04 16 6 C 0.11 0.86 6.04 -3.71 -0.02 0.83 16 7 N -0.64 -6.93 2.98 -178.76 -0.53 -7.46 16 8 C 0.71 10.90 8.30 -86.92 -0.72 10.17 16 9 O -0.59 -11.36 15.77 5.29 0.08 -11.28 16 10 N -0.74 -11.49 5.47 -65.23 -0.36 -11.84 16 11 C 0.15 2.87 5.62 -4.04 -0.02 2.85 16 12 C -0.02 -0.47 4.16 -27.89 -0.12 -0.59 16 13 C -0.52 -14.31 9.66 -34.44 -0.33 -14.65 16 14 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 17 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 21 C 0.13 1.17 6.07 -3.94 -0.02 1.15 16 22 C -0.15 -0.97 5.32 -26.83 -0.14 -1.12 16 23 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.55 7.38 -51.93 -0.38 0.17 16 26 H 0.10 0.69 5.64 -51.93 -0.29 0.40 16 27 H 0.39 4.94 5.96 -40.82 -0.24 4.70 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 31 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.11 1.17 6.99 -51.93 -0.36 0.81 16 34 H 0.06 0.57 7.38 -51.92 -0.38 0.19 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 304.23 15.07 4.58 4.58 Total: -1.00 -33.28 304.23 -5.85 -39.13 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.56 Total: -0.23 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -2.00 Total: 2.32 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.67 Total: -49.06 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.28 -5.85 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345932185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.917 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds