Wall clock time and date at job start Mon Mar 30 2020 01:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 F 1.39898 * 109.45182 * 32.06839 * 3 2 1 5 5 C 1.53044 * 109.45865 * 152.03647 * 3 2 1 6 6 C 1.53194 * 109.31482 * 58.65164 * 5 3 2 7 7 N 1.46929 * 108.76910 * 54.63716 * 6 5 3 8 8 C 1.34778 * 120.62399 * 126.37392 * 7 6 5 9 9 O 1.21588 * 119.99556 * 185.21700 * 8 7 6 10 10 N 1.34777 * 120.00397 * 4.94351 * 8 7 6 11 11 C 1.46499 * 119.99984 * 175.29922 * 10 8 7 12 12 C 1.52995 * 109.47059 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.47197 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00086 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99747 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99674 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 120.00280 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.47271 * 90.00148 * 17 15 13 19 19 H 1.48508 * 109.47397 * 209.99939 * 17 15 13 20 20 H 1.48496 * 109.47551 * 330.00178 * 17 15 13 21 21 C 1.46919 * 118.74318 * 306.64182 * 7 6 5 22 22 C 1.52761 * 109.00762 * 53.31078 * 21 7 6 23 23 H 1.09003 * 109.49563 * 298.70296 * 5 3 2 24 24 H 1.09004 * 109.50143 * 178.60988 * 5 3 2 25 25 H 1.09003 * 109.58522 * 294.85233 * 6 5 3 26 26 H 1.08997 * 109.58767 * 174.42413 * 6 5 3 27 27 H 0.96995 * 119.99730 * 355.29599 * 10 8 7 28 28 H 1.09001 * 109.46878 * 299.99465 * 11 10 8 29 29 H 1.08999 * 109.47612 * 59.99688 * 11 10 8 30 30 H 1.09006 * 109.47199 * 299.99915 * 12 11 10 31 31 H 1.08998 * 109.47513 * 59.99776 * 12 11 10 32 32 H 0.97003 * 119.99805 * 180.02562 * 16 15 13 33 33 H 1.08993 * 109.58844 * 173.15036 * 21 7 6 34 34 H 1.09008 * 109.58494 * 293.57135 * 21 7 6 35 35 H 1.09004 * 109.56659 * 185.55536 * 22 21 7 36 36 H 1.08994 * 109.38396 * 65.51818 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 9 3.0743 -1.1170 -0.7004 5 6 3.1172 1.2754 -0.6766 6 6 2.5763 2.4974 0.0724 7 7 2.9394 2.3811 1.4913 8 6 3.5927 3.3802 2.1170 9 8 3.9714 3.2348 3.2632 10 7 3.8312 4.5383 1.4703 11 6 4.4489 5.6605 2.1812 12 6 4.6081 6.8443 1.2252 13 6 5.2429 7.9989 1.9567 14 1 5.5067 7.8983 2.9990 15 6 5.4877 9.1834 1.2947 16 7 6.0421 10.1909 1.9330 17 14 5.0320 9.3573 -0.5084 18 1 3.6427 9.8699 -0.6207 19 1 5.9649 10.3078 -1.1654 20 1 5.1259 8.0325 -1.1727 21 6 2.5820 1.1526 2.2136 22 6 3.1179 -0.0520 1.4420 23 1 2.7731 1.3008 -1.7106 24 1 4.2069 1.2884 -0.6551 25 1 1.4913 2.5351 -0.0253 26 1 3.0144 3.4045 -0.3438 27 1 3.5940 4.6288 0.5341 28 1 3.8158 5.9524 3.0191 29 1 5.4284 5.3601 2.5533 30 1 5.2414 6.5522 0.3874 31 1 3.6288 7.1449 0.8528 32 1 6.2141 11.0243 1.4674 33 1 3.0238 1.1728 3.2098 34 1 1.4974 1.0785 2.2941 35 1 2.7742 -0.9714 1.9160 36 1 4.2075 -0.0271 1.4437 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345932185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:42 Heat of formation + Delta-G solvation = -67.218292 kcal Electronic energy + Delta-G solvation = -20341.755507 eV Core-core repulsion = 16967.824896 eV Total energy + Delta-G solvation = -3373.930611 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.11028 -41.52160 -39.14295 -37.21488 -36.62631 -34.86808 -33.68989 -32.54539 -31.55339 -27.36564 -26.15160 -24.63232 -23.60822 -22.61997 -21.23811 -19.54666 -18.95589 -18.64957 -17.39736 -17.02455 -16.76271 -16.67930 -16.24676 -15.64263 -15.47526 -15.42947 -15.19617 -14.66201 -14.59635 -14.39111 -13.94635 -13.74203 -13.58774 -13.38608 -13.36229 -13.25066 -12.99542 -12.44294 -12.17708 -12.12555 -12.10312 -11.72872 -11.65581 -11.46267 -11.18500 -10.75779 -10.21889 -9.61163 -8.26801 -6.34006 1.37658 1.39664 1.42037 1.44711 1.55293 1.56233 2.10306 2.29830 2.39961 2.91982 3.08627 3.09968 3.29672 3.47537 3.79198 4.12681 4.18210 4.32540 4.41908 4.49639 4.51341 4.62787 4.71274 4.77056 4.79870 4.94701 5.01338 5.17783 5.43647 5.45764 5.47533 5.69332 5.85082 6.14819 6.26266 6.73580 6.96615 7.30516 7.54931 8.90067 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.031233 B = 0.003835 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.266527 B = 7299.881322 C = 7750.009663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.202 3.798 3 C 0.239 3.761 4 F -0.180 7.180 5 C -0.146 4.146 6 C 0.103 3.897 7 N -0.628 5.628 8 C 0.705 3.295 9 O -0.632 6.632 10 N -0.731 5.731 11 C 0.164 3.836 12 C -0.012 4.012 13 C -0.538 4.538 14 H 0.028 0.972 15 C 0.003 3.997 16 N -0.952 5.952 17 Si 0.959 3.041 18 H -0.267 1.267 19 H -0.289 1.289 20 H -0.232 1.232 21 C 0.126 3.874 22 C -0.143 4.143 23 H 0.122 0.878 24 H 0.119 0.881 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.408 0.592 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.267 0.733 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.072 -22.665 -10.152 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.118 4.118 3 C 0.217 3.783 4 F -0.160 7.160 5 C -0.185 4.185 6 C -0.020 4.020 7 N -0.366 5.366 8 C 0.406 3.594 9 O -0.513 6.513 10 N -0.389 5.389 11 C 0.039 3.961 12 C -0.050 4.050 13 C -0.577 4.577 14 H 0.047 0.953 15 C -0.194 4.194 16 N -0.593 5.593 17 Si 0.781 3.219 18 H -0.192 1.192 19 H -0.215 1.215 20 H -0.155 1.155 21 C 0.003 3.997 22 C -0.183 4.183 23 H 0.140 0.860 24 H 0.138 0.862 25 H 0.093 0.907 26 H 0.127 0.873 27 H 0.247 0.753 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.464 -22.617 -9.356 25.897 hybrid contribution 0.273 0.610 -0.548 0.864 sum -8.191 -22.007 -9.903 25.485 Atomic orbital electron populations 1.81259 1.13802 1.07414 1.08081 1.29699 0.95491 0.93444 0.93188 1.18218 0.79357 0.85889 0.94793 1.93001 1.88481 1.53966 1.80547 1.22632 1.04860 0.89722 1.01308 1.21857 1.01014 0.99822 0.79266 1.47298 1.60539 1.16963 1.11794 1.15987 0.78576 0.80734 0.84094 1.90885 1.58967 1.82209 1.19285 1.45304 1.66260 1.12190 1.15110 1.20888 0.95997 0.84504 0.94698 1.19645 0.97398 0.92128 0.95788 1.21264 1.40738 0.97947 0.97703 0.95321 1.26092 0.94208 0.94921 1.04165 1.70085 1.44957 1.04724 1.39483 0.85544 0.78294 0.79732 0.78322 1.19213 1.21483 1.15474 1.21387 0.99788 0.81338 0.97185 1.22518 1.04626 1.00305 0.90812 0.85990 0.86223 0.90657 0.87259 0.75330 0.94191 0.93771 0.94202 0.94718 0.92404 0.88597 0.91424 0.86565 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.01 18.54 20.00 0.37 -8.64 16 2 C 0.20 3.11 11.90 89.44 1.06 4.17 16 3 C 0.24 2.53 1.38 -12.57 -0.02 2.51 16 4 F -0.18 -2.16 16.77 44.97 0.75 -1.41 16 5 C -0.15 -1.14 5.34 30.67 0.16 -0.98 16 6 C 0.10 1.26 6.04 86.36 0.52 1.78 16 7 N -0.63 -12.37 2.98 -837.74 -2.49 -14.86 16 8 C 0.70 20.99 8.30 179.05 1.49 22.48 16 9 O -0.63 -24.75 15.77 -3.99 -0.06 -24.81 16 10 N -0.73 -21.42 5.47 -478.54 -2.62 -24.04 16 11 C 0.16 6.41 5.62 86.38 0.49 6.89 16 12 C -0.01 -0.50 4.16 29.85 0.12 -0.38 16 13 C -0.54 -30.03 9.66 25.60 0.25 -29.78 16 14 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 15 C 0.00 0.17 5.47 84.65 0.46 0.63 16 16 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 17 Si 0.96 41.04 27.47 68.60 1.88 42.92 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.23 -8.59 6.54 99.48 0.65 -7.94 16 21 C 0.13 2.09 6.07 86.22 0.52 2.61 16 22 C -0.14 -1.46 5.32 30.53 0.16 -1.30 16 23 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.08 0.92 7.38 -2.39 -0.02 0.91 16 26 H 0.11 1.10 5.64 -2.39 -0.01 1.09 16 27 H 0.41 8.96 5.96 -92.71 -0.55 8.41 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.57 7.20 -2.38 -0.02 1.55 16 31 H 0.03 1.37 7.57 -2.39 -0.02 1.35 16 32 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.10 1.96 6.99 -2.39 -0.02 1.95 16 34 H 0.07 1.09 7.38 -2.38 -0.02 1.08 16 35 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -75.15 304.23 3.86 -71.29 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.50 Total: 9.32 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.22 Total: 8.65 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -4.44 Total: -105.96 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.06 Total: -24.81 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.75 Total: -1.41 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.88 Total: 42.92 kcal Total: -75.15 3.86 -71.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345932185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.075 kcal (2) G-P(sol) polarization free energy of solvation -75.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds