Wall clock time and date at job start Mon Mar 30 2020 00:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00204 * 2 1 4 4 C 1.50701 * 109.47500 * 179.97438 * 3 2 1 5 5 N 1.30940 * 126.44745 * 90.29703 * 4 3 2 6 6 C 1.35226 * 105.58192 * 180.14331 * 5 4 3 7 7 C 1.48446 * 126.40508 * 179.84690 * 6 5 4 8 8 O 1.21481 * 120.00315 * 359.71288 * 7 6 5 9 9 N 1.34774 * 119.99591 * 179.71236 * 7 6 5 10 10 C 1.46506 * 120.00072 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47130 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00100 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99709 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99653 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00192 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47123 * 89.99910 * 17 15 13 19 19 H 1.48506 * 109.46940 * 210.00033 * 17 15 13 20 20 H 1.48501 * 109.47006 * 329.99902 * 17 15 13 21 21 N 1.30660 * 107.18240 * 359.58259 * 6 5 4 22 22 O 1.21293 * 110.11765 * 0.26342 * 21 6 5 23 23 H 1.08999 * 109.46921 * 60.00234 * 1 2 3 24 24 H 1.09001 * 109.46841 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47094 * 299.99834 * 1 2 3 26 26 H 1.08996 * 109.47086 * 59.99939 * 3 2 1 27 27 H 1.09002 * 109.46814 * 300.00028 * 3 2 1 28 28 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 30 30 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 32 32 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 33 33 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 34 34 H 1.09004 * 109.47298 * 59.99717 * 12 11 10 35 35 H 0.96997 * 120.00125 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2889 1.1303 -1.0523 6 6 5.5479 1.0249 -0.5702 7 6 6.7930 0.9259 -1.3723 8 8 6.7359 0.9302 -2.5857 9 7 7.9869 0.8312 -0.7541 10 6 9.2159 0.7340 -1.5457 11 6 10.4206 0.6377 -0.6074 12 6 11.7041 0.5368 -1.4340 13 6 12.8907 0.4426 -0.5098 14 1 12.7441 0.4532 0.5601 15 6 14.1636 0.3419 -1.0302 16 7 15.1991 0.2602 -0.2237 17 14 14.4172 0.3229 -2.8808 18 1 14.5952 1.7135 -3.3704 19 1 15.6265 -0.4752 -3.2065 20 1 13.2315 -0.2848 -3.5367 21 7 5.4637 1.0323 0.7337 22 8 4.3039 1.1244 1.0764 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8463 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 8.0327 0.8281 0.2148 29 1 9.1737 -0.1553 -2.1746 30 1 9.3143 1.6191 -2.1742 31 1 10.4630 1.5268 0.0218 32 1 10.3220 -0.2476 0.0208 33 1 11.6619 -0.3521 -2.0634 34 1 11.8024 1.4224 -2.0619 35 1 16.0946 0.1897 -0.5898 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359263258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:16 Heat of formation + Delta-G solvation = -12.614446 kcal Electronic energy + Delta-G solvation = -19256.447088 eV Core-core repulsion = 15872.511489 eV Total energy + Delta-G solvation = -3383.935600 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.11076 -39.71658 -38.65422 -36.21794 -35.62339 -33.77534 -33.15304 -31.49230 -29.05552 -27.73621 -26.47775 -25.61427 -23.52258 -22.73120 -21.01060 -20.29193 -18.78675 -18.55940 -17.17638 -16.97778 -16.85240 -16.60091 -16.13345 -15.72090 -15.57506 -14.36386 -14.16965 -13.90000 -13.89318 -13.30985 -12.76449 -12.71467 -12.40329 -12.19097 -12.00472 -11.91157 -11.60138 -11.16001 -10.93179 -10.63799 -10.60810 -10.49357 -10.08604 -9.89151 -9.73164 -9.25436 -9.11693 -8.56975 -6.07511 -4.06582 0.41394 1.20697 2.08311 2.41379 2.91030 3.21920 3.30504 3.38202 3.42063 3.50951 3.76347 4.30709 4.43147 4.54981 4.65157 4.72668 4.79666 4.98473 5.12651 5.26233 5.36772 5.47030 5.55127 5.91224 6.10255 6.27498 6.36640 6.54215 6.71581 7.18416 7.22868 7.32169 7.59113 7.73584 7.92415 8.48555 8.96218 9.54289 11.05637 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.057139 B = 0.002661 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.917264 B =10521.375400 C =10847.916598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.159 3.841 4 C 0.178 3.822 5 N -0.418 5.418 6 C 0.139 3.861 7 C 0.603 3.397 8 O -0.502 6.502 9 N -0.703 5.703 10 C 0.114 3.886 11 C -0.114 4.114 12 C -0.011 4.011 13 C -0.523 4.523 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.902 5.902 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.264 1.264 21 N -0.340 5.340 22 O 0.109 5.891 23 H 0.050 0.950 24 H 0.095 0.905 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.408 0.592 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.020 0.980 34 H 0.016 0.984 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.533 2.754 2.542 30.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.080 3.920 4 C -0.044 4.044 5 N -0.153 5.153 6 C -0.135 4.135 7 C 0.383 3.617 8 O -0.373 6.373 9 N -0.355 5.355 10 C -0.008 4.008 11 C -0.152 4.152 12 C -0.049 4.049 13 C -0.561 4.561 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.541 5.541 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 N -0.043 5.043 22 O 0.038 5.962 23 H 0.069 0.931 24 H 0.113 0.887 25 H 0.069 0.931 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.243 0.757 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.034 0.966 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -29.379 2.500 1.654 29.532 hybrid contribution -0.045 0.180 -0.318 0.368 sum -29.424 2.679 1.335 29.576 Atomic orbital electron populations 1.22877 0.78758 1.03921 1.00780 1.87965 1.21257 1.25248 1.95674 1.20624 0.79597 0.87085 1.04650 1.28362 0.97881 0.97867 0.80263 1.72024 0.99312 1.15904 1.28021 1.25809 0.95420 1.04541 0.87759 1.16330 0.80659 0.78624 0.86129 1.90846 1.85641 1.48688 1.12142 1.45991 1.05523 1.72542 1.11402 1.21864 0.81583 1.02561 0.94765 1.21740 0.93294 1.02072 0.98132 1.19508 0.92492 0.96768 0.96094 1.21079 0.89571 1.50851 0.94593 0.90957 1.25034 0.96022 0.94458 0.97995 1.69909 0.98713 1.50550 1.34903 0.86770 0.77925 0.78457 0.86112 1.20227 1.21344 1.18879 1.74960 0.97742 1.16504 1.15088 1.85307 1.11527 1.63594 1.35728 0.93128 0.88660 0.93134 0.88694 0.87885 0.75709 0.90957 0.90961 0.91837 0.91800 0.96170 0.96609 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 11.01 101.05 1.11 1.22 16 2 O -0.38 -2.72 10.69 -35.23 -0.38 -3.09 16 3 C 0.16 0.84 6.56 36.01 0.24 1.08 16 4 C 0.18 1.75 8.13 -13.00 -0.11 1.65 16 5 N -0.42 -5.71 11.57 -9.93 -0.11 -5.82 16 6 C 0.14 2.02 8.01 -156.18 -1.25 0.77 16 7 C 0.60 9.82 7.85 -12.06 -0.09 9.73 16 8 O -0.50 -9.71 17.10 5.38 0.09 -9.62 16 9 N -0.70 -10.47 5.55 -61.05 -0.34 -10.81 16 10 C 0.11 1.88 5.67 -4.04 -0.02 1.86 16 11 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 12 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 13 C -0.52 -14.71 9.66 -34.44 -0.33 -15.05 16 14 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 17 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 21 N -0.34 -4.34 11.89 30.93 0.37 -3.98 16 22 O 0.11 1.14 11.29 17.98 0.20 1.34 16 23 H 0.05 0.10 8.14 -51.93 -0.42 -0.32 16 24 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.05 0.07 8.14 -51.93 -0.42 -0.35 16 26 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.41 5.32 8.21 -40.82 -0.33 4.99 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 34 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 314.49 15.07 4.74 4.74 Total: -1.00 -34.96 314.49 -4.63 -39.59 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -4.49 Total: -2.87 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.81 Total: 0.45 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.69 Total: -47.57 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.08 Total: -11.37 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.96 -4.63 -39.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359263258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.971 kcal (2) G-P(sol) polarization free energy of solvation -34.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds