Wall clock time and date at job start Mon Mar 30 2020 00:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00204 * 2 1 4 4 C 1.50701 * 109.47500 * 179.97438 * 3 2 1 5 5 N 1.30940 * 126.44745 * 90.29703 * 4 3 2 6 6 C 1.35226 * 105.58192 * 180.14331 * 5 4 3 7 7 C 1.48446 * 126.40508 * 179.84690 * 6 5 4 8 8 O 1.21481 * 120.00315 * 359.71288 * 7 6 5 9 9 N 1.34774 * 119.99591 * 179.71236 * 7 6 5 10 10 C 1.46506 * 120.00072 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47130 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00100 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99709 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99653 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00192 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47123 * 89.99910 * 17 15 13 19 19 H 1.48506 * 109.46940 * 210.00033 * 17 15 13 20 20 H 1.48501 * 109.47006 * 329.99902 * 17 15 13 21 21 N 1.30660 * 107.18240 * 359.58259 * 6 5 4 22 22 O 1.21293 * 110.11765 * 0.26342 * 21 6 5 23 23 H 1.08999 * 109.46921 * 60.00234 * 1 2 3 24 24 H 1.09001 * 109.46841 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47094 * 299.99834 * 1 2 3 26 26 H 1.08996 * 109.47086 * 59.99939 * 3 2 1 27 27 H 1.09002 * 109.46814 * 300.00028 * 3 2 1 28 28 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 30 30 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 32 32 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 33 33 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 34 34 H 1.09004 * 109.47298 * 59.99717 * 12 11 10 35 35 H 0.96997 * 120.00125 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2889 1.1303 -1.0523 6 6 5.5479 1.0249 -0.5702 7 6 6.7930 0.9259 -1.3723 8 8 6.7359 0.9302 -2.5857 9 7 7.9869 0.8312 -0.7541 10 6 9.2159 0.7340 -1.5457 11 6 10.4206 0.6377 -0.6074 12 6 11.7041 0.5368 -1.4340 13 6 12.8907 0.4426 -0.5098 14 1 12.7441 0.4532 0.5601 15 6 14.1636 0.3419 -1.0302 16 7 15.1991 0.2602 -0.2237 17 14 14.4172 0.3229 -2.8808 18 1 14.5952 1.7135 -3.3704 19 1 15.6265 -0.4752 -3.2065 20 1 13.2315 -0.2848 -3.5367 21 7 5.4637 1.0323 0.7337 22 8 4.3039 1.1244 1.0764 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8463 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 8.0327 0.8281 0.2148 29 1 9.1737 -0.1553 -2.1746 30 1 9.3143 1.6191 -2.1742 31 1 10.4630 1.5268 0.0218 32 1 10.3220 -0.2476 0.0208 33 1 11.6619 -0.3521 -2.0634 34 1 11.8024 1.4224 -2.0619 35 1 16.0946 0.1897 -0.5898 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359263258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:16 Heat of formation + Delta-G solvation = -41.633035 kcal Electronic energy + Delta-G solvation = -19257.705429 eV Core-core repulsion = 15872.511489 eV Total energy + Delta-G solvation = -3385.193940 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.05444 -41.00570 -39.05050 -37.35937 -36.91102 -35.35473 -34.38205 -33.27224 -29.72561 -29.22109 -26.94176 -26.81143 -24.69910 -24.07196 -22.39161 -21.74530 -19.69127 -19.63485 -18.90343 -18.22999 -17.40796 -17.29573 -16.94267 -16.91071 -16.57783 -16.26036 -15.64142 -15.30567 -14.79626 -14.47797 -13.88109 -13.84642 -13.77559 -13.21174 -13.17623 -12.80665 -12.74460 -12.56302 -12.43007 -12.11924 -11.83472 -11.64273 -11.57169 -11.52503 -11.35288 -10.79621 -10.76745 -10.41869 -8.29783 -6.34074 -0.50283 0.25699 1.28305 1.37338 1.38669 1.39165 1.50731 1.71925 2.36171 2.43792 2.61745 3.05899 3.11201 3.59490 3.93678 3.98177 4.12455 4.18049 4.34976 4.42595 4.56176 4.57318 4.67017 4.73562 4.81979 4.97465 4.99228 5.09048 5.43047 5.52454 5.63474 5.99290 6.03866 6.26239 6.61951 6.73351 6.74815 7.30571 8.86609 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.057139 B = 0.002661 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.917264 B =10521.375400 C =10847.916598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.156 3.844 4 C 0.197 3.803 5 N -0.454 5.454 6 C 0.118 3.882 7 C 0.605 3.395 8 O -0.538 6.538 9 N -0.693 5.693 10 C 0.125 3.875 11 C -0.102 4.102 12 C -0.012 4.012 13 C -0.532 4.532 14 H 0.036 0.964 15 C 0.003 3.997 16 N -0.950 5.950 17 Si 0.949 3.051 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.246 1.246 21 N -0.341 5.341 22 O 0.124 5.876 23 H 0.061 0.939 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.137 0.863 27 H 0.121 0.879 28 H 0.417 0.583 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.938 3.219 1.984 33.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.335 6.335 3 C 0.079 3.921 4 C -0.024 4.024 5 N -0.188 5.188 6 C -0.155 4.155 7 C 0.387 3.613 8 O -0.413 6.413 9 N -0.345 5.345 10 C 0.003 3.997 11 C -0.140 4.140 12 C -0.050 4.050 13 C -0.570 4.570 14 H 0.055 0.945 15 C -0.194 4.194 16 N -0.591 5.591 17 Si 0.772 3.228 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.169 1.169 21 N -0.043 5.043 22 O 0.051 5.949 23 H 0.080 0.920 24 H 0.114 0.886 25 H 0.090 0.910 26 H 0.154 0.846 27 H 0.139 0.861 28 H 0.254 0.746 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -31.799 2.966 1.113 31.957 hybrid contribution 0.583 0.035 0.016 0.585 sum -31.216 3.000 1.129 31.380 Atomic orbital electron populations 1.23074 0.76807 1.04557 1.02357 1.87903 1.23358 1.26226 1.96036 1.21104 0.76383 0.87071 1.07571 1.29271 0.99253 0.94920 0.78918 1.72004 0.99390 1.17701 1.29697 1.25440 0.95200 1.06690 0.88213 1.16478 0.81308 0.77716 0.85832 1.90816 1.86308 1.50483 1.13676 1.45810 1.04899 1.71982 1.11787 1.21595 0.81258 1.02699 0.94160 1.21512 0.92264 1.02374 0.97872 1.19466 0.92534 0.97168 0.95791 1.21453 0.91614 1.50008 0.93908 0.94548 1.26017 0.95735 0.94213 1.03440 1.70060 0.99369 1.52293 1.37378 0.85672 0.78429 0.79018 0.79638 1.19183 1.21137 1.16894 1.74941 0.98939 1.16110 1.14269 1.85290 1.10981 1.62902 1.35775 0.92045 0.88617 0.91037 0.84551 0.86096 0.74574 0.90998 0.90771 0.91528 0.91650 0.95720 0.95755 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 11.01 113.37 1.25 1.35 16 2 O -0.42 -4.94 10.69 -148.98 -1.59 -6.53 16 3 C 0.16 1.19 6.56 71.24 0.47 1.65 16 4 C 0.20 3.51 8.13 88.36 0.72 4.22 16 5 N -0.45 -11.98 11.57 -302.77 -3.50 -15.48 16 6 C 0.12 3.35 8.01 137.33 1.10 4.45 16 7 C 0.61 19.50 7.85 86.97 0.68 20.19 16 8 O -0.54 -20.85 17.10 -3.66 -0.06 -20.91 16 9 N -0.69 -20.03 5.55 -465.38 -2.58 -22.61 16 10 C 0.13 3.97 5.67 86.38 0.49 4.46 16 11 C -0.10 -3.70 5.27 30.59 0.16 -3.54 16 12 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 13 C -0.53 -30.23 9.66 25.60 0.25 -29.98 16 14 H 0.04 2.26 7.99 -2.91 -0.02 2.23 16 15 C 0.00 0.16 5.47 84.66 0.46 0.63 16 16 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 17 Si 0.95 44.29 27.47 68.60 1.88 46.18 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 21 N -0.34 -8.32 11.89 -59.35 -0.71 -9.02 16 22 O 0.12 2.38 11.29 74.41 0.84 3.22 16 23 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 24 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 25 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.14 -0.09 8.14 -2.39 -0.02 -0.11 16 27 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.42 10.47 8.21 -92.71 -0.76 9.71 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 34 H 0.02 1.06 7.57 -2.38 -0.02 1.04 16 35 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -76.83 314.49 0.58 -76.26 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 0.30 Total: 5.20 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 5.70 Total: 3.02 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -6.49 Total: -106.43 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.81 Total: -24.22 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Total: -76.83 0.58 -76.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359263258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.625 kcal (2) G-P(sol) polarization free energy of solvation -76.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds