Wall clock time and date at job start Mon Mar 30 2020 01:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99731 * 2 1 4 4 H 1.48501 * 109.47416 * 274.80198 * 3 2 1 5 5 H 1.48498 * 109.47040 * 34.80639 * 3 2 1 6 6 H 1.48506 * 109.46964 * 154.80135 * 3 2 1 7 7 C 1.37878 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00358 * 4.85929 * 7 2 1 9 9 C 1.50700 * 119.99946 * 184.86538 * 7 2 1 10 10 C 1.53007 * 115.54965 * 84.76864 * 9 7 2 11 11 N 1.46500 * 109.47125 * 39.78700 * 10 9 7 12 12 C 1.38675 * 120.00097 * 185.08178 * 11 10 9 13 13 C 1.40646 * 119.75111 * 354.66288 * 12 11 10 14 14 N 1.31096 * 120.60375 * 180.28104 * 13 12 11 15 15 C 1.33923 * 119.85750 * 359.97438 * 14 13 12 16 16 C 1.40517 * 120.96661 * 180.02562 * 15 14 13 17 17 C 1.36124 * 119.74236 * 180.02562 * 16 15 14 18 18 C 1.39334 * 120.94539 * 359.95307 * 17 16 15 19 19 C 1.36121 * 120.92682 * 0.02562 * 18 17 16 20 20 C 1.40515 * 119.73809 * 0.02562 * 19 18 17 21 21 N 1.31932 * 119.75412 * 174.93618 * 12 11 10 22 22 C 1.52991 * 117.51973 * 230.47367 * 9 7 2 23 23 C 1.52997 * 60.00306 * 107.47876 * 22 9 7 24 24 H 0.96998 * 120.00114 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47273 * 279.78612 * 10 9 7 26 26 H 1.09000 * 109.46814 * 159.78497 * 10 9 7 27 27 H 0.97004 * 119.99840 * 5.08956 * 11 10 9 28 28 H 1.07995 * 119.70249 * 0.27064 * 13 12 11 29 29 H 1.08000 * 120.13006 * 0.03043 * 16 15 14 30 30 H 1.08004 * 119.52740 * 179.97438 * 17 16 15 31 31 H 1.07999 * 119.53443 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.13016 * 180.02562 * 19 18 17 33 33 H 1.08999 * 117.50158 * 214.96614 * 22 9 7 34 34 H 1.09003 * 117.50186 * 359.97438 * 22 9 7 35 35 H 1.08997 * 117.50410 * 252.51162 * 23 22 9 36 36 H 1.09006 * 117.51839 * 107.48060 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3951 2.1051 -1.3951 5 1 1.5010 2.6212 0.7992 6 1 3.5937 1.4130 0.5961 7 6 2.0046 -1.1941 -0.0005 8 1 1.4675 -2.1276 -0.0802 9 6 3.5075 -1.1964 0.1102 10 6 4.0644 -1.1306 1.5337 11 7 3.2491 -1.9688 2.4163 12 6 3.4975 -1.9858 3.7805 13 6 4.6023 -1.2858 4.2976 14 7 4.8558 -1.2950 5.5838 15 6 4.0573 -1.9758 6.4159 16 6 4.3070 -2.0012 7.7985 17 6 3.4794 -2.7017 8.6214 18 6 2.3836 -3.3963 8.1133 19 6 2.1108 -3.3937 6.7797 20 6 2.9436 -2.6825 5.8993 21 7 2.6987 -2.6630 4.5831 22 6 4.2907 -2.0154 -0.9177 23 6 4.2981 -0.4872 -0.9912 24 1 -0.4850 0.8400 0.0004 25 1 4.0392 -0.0996 1.8865 26 1 5.0931 -1.4912 1.5384 27 1 2.5356 -2.5120 2.0464 28 1 5.2478 -0.7357 3.6290 29 1 5.1522 -1.4668 8.2066 30 1 3.6748 -2.7192 9.6835 31 1 1.7417 -3.9443 8.7871 32 1 1.2577 -3.9362 6.3999 33 1 5.2028 -2.5074 -0.5798 34 1 3.7190 -2.5532 -1.6741 35 1 3.7312 -0.0193 -1.7960 36 1 5.2148 0.0265 -0.7015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362366583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:33 Heat of formation + Delta-G solvation = 98.291661 kcal Electronic energy + Delta-G solvation = -19526.028305 eV Core-core repulsion = 16590.043969 eV Total energy + Delta-G solvation = -2935.984336 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.00636 -38.07170 -37.05822 -34.92488 -33.72014 -32.24762 -30.37590 -29.54427 -26.44351 -25.43718 -24.68694 -22.82054 -21.96306 -21.78791 -19.42828 -18.38579 -17.94855 -16.75841 -16.34179 -15.32115 -15.14595 -15.02835 -14.80831 -14.27515 -14.04117 -13.62539 -13.55465 -13.18509 -12.77998 -12.43211 -11.87428 -11.76382 -11.54167 -11.48543 -11.23440 -11.20013 -10.87423 -10.62723 -10.35643 -9.70443 -9.55987 -9.23109 -8.78909 -8.71656 -8.63025 -8.50535 -7.26962 -6.25038 -4.31137 0.51687 1.02496 2.24871 3.07973 3.18721 3.29662 3.30757 3.47449 4.29535 4.35405 4.38177 4.53504 4.69767 4.80717 4.94679 5.02248 5.09723 5.30022 5.38904 5.51173 5.56247 5.78603 5.90866 5.94245 5.96286 6.09249 6.20711 6.23757 6.33195 6.42272 6.49235 6.55394 6.76852 6.89210 6.96086 7.23884 7.55699 7.76656 8.01628 8.30057 8.42403 8.75965 9.37125 10.85812 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025940 B = 0.004860 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.173966 B = 5759.437632 C = 6008.763759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.084 3.916 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.255 1.255 7 C -0.496 4.496 8 H 0.080 0.920 9 C -0.014 4.014 10 C 0.149 3.851 11 N -0.665 5.665 12 C 0.385 3.615 13 C 0.042 3.958 14 N -0.401 5.401 15 C 0.002 3.998 16 C -0.057 4.057 17 C -0.143 4.143 18 C -0.089 4.089 19 C -0.109 4.109 20 C 0.151 3.849 21 N -0.522 5.522 22 C -0.178 4.178 23 C -0.191 4.191 24 H 0.266 0.734 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.421 0.579 28 H 0.168 0.832 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.722 -3.634 11.269 14.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.120 4.120 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.179 1.179 7 C -0.533 4.533 8 H 0.098 0.902 9 C -0.016 4.016 10 C 0.025 3.975 11 N -0.295 5.295 12 C 0.131 3.869 13 C -0.142 4.142 14 N -0.113 5.113 15 C -0.122 4.122 16 C -0.076 4.076 17 C -0.164 4.164 18 C -0.109 4.109 19 C -0.130 4.130 20 C 0.024 3.976 21 N -0.249 5.249 22 C -0.215 4.215 23 C -0.229 4.229 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.260 0.740 28 H 0.185 0.815 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.632 -3.437 11.279 14.613 hybrid contribution 0.007 0.895 -0.374 0.970 sum 8.639 -2.542 10.905 14.142 Atomic orbital electron populations 1.69892 1.06442 1.27376 1.48601 1.24978 0.94535 0.99145 0.93358 0.86886 0.80778 0.83448 0.78348 1.20439 1.22051 1.17947 1.20128 0.86276 0.94704 1.52226 0.90243 1.19507 0.95040 1.01018 0.85994 1.21301 0.91764 0.93405 0.91040 1.44800 1.37334 1.46579 1.00821 1.19729 0.89751 0.90025 0.87426 1.23561 0.97177 1.00819 0.92681 1.68455 1.26139 1.13571 1.03115 1.19308 0.96126 1.01855 0.94952 1.20651 0.98988 0.97532 0.90447 1.20739 0.96130 0.99651 0.99852 1.20873 0.96944 0.98067 0.94994 1.20705 0.99826 1.00063 0.92368 1.19289 0.93418 0.94809 0.90103 1.68358 1.29207 1.24688 1.02644 1.22922 1.01189 0.93067 1.04289 1.22962 1.01503 0.94909 1.03548 0.92362 0.91998 0.93221 0.73953 0.81506 0.85234 0.85619 0.85486 0.84828 0.90740 0.89353 0.89219 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.96 55.43 0.77 -24.99 16 2 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 3 Si 0.88 20.39 25.19 -169.99 -4.28 16.11 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -5.41 5.24 56.52 0.30 -5.12 16 7 C -0.50 -12.51 8.09 -34.44 -0.28 -12.79 16 8 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 9 C -0.01 -0.29 1.13 -155.66 -0.18 -0.47 16 10 C 0.15 2.72 4.79 -4.04 -0.02 2.70 16 11 N -0.67 -12.69 5.45 -60.20 -0.33 -13.02 16 12 C 0.38 7.18 7.65 -155.16 -1.19 5.99 16 13 C 0.04 0.71 10.46 -16.96 -0.18 0.53 16 14 N -0.40 -6.83 10.45 -10.61 -0.11 -6.94 16 15 C 0.00 0.03 6.59 -84.79 -0.56 -0.53 16 16 C -0.06 -0.75 9.98 -39.48 -0.39 -1.14 16 17 C -0.14 -1.57 9.95 -39.93 -0.40 -1.96 16 18 C -0.09 -1.00 9.95 -39.93 -0.40 -1.40 16 19 C -0.11 -1.56 9.98 -39.48 -0.39 -1.95 16 20 C 0.15 2.63 6.59 -84.80 -0.56 2.07 16 21 N -0.52 -10.10 10.49 -10.04 -0.11 -10.21 16 22 C -0.18 -3.19 9.88 -26.74 -0.26 -3.45 16 23 C -0.19 -3.60 7.33 -26.73 -0.20 -3.80 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.06 1.15 6.39 -51.93 -0.33 0.82 16 26 H 0.05 0.77 7.77 -51.93 -0.40 0.36 16 27 H 0.42 8.67 7.68 -40.82 -0.31 8.36 16 28 H 0.17 2.38 6.70 -52.49 -0.35 2.02 16 29 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 30 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 34 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 35 H 0.09 1.80 7.13 -51.93 -0.37 1.43 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 301.45 15.07 4.54 4.54 Total: -1.00 -29.25 301.45 -9.00 -38.24 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.39 Total: 10.32 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -5.10 Total: -14.05 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.23 Total: -55.16 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.28 Total: 16.11 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.25 -9.00 -38.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362366583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.537 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds