Wall clock time and date at job start Mon Mar 30 2020 01:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99731 * 2 1 4 4 H 1.48501 * 109.47416 * 274.80198 * 3 2 1 5 5 H 1.48498 * 109.47040 * 34.80639 * 3 2 1 6 6 H 1.48506 * 109.46964 * 154.80135 * 3 2 1 7 7 C 1.37878 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00358 * 4.85929 * 7 2 1 9 9 C 1.50700 * 119.99946 * 184.86538 * 7 2 1 10 10 C 1.53007 * 115.54965 * 84.76864 * 9 7 2 11 11 N 1.46500 * 109.47125 * 39.78700 * 10 9 7 12 12 C 1.38675 * 120.00097 * 185.08178 * 11 10 9 13 13 C 1.40646 * 119.75111 * 354.66288 * 12 11 10 14 14 N 1.31096 * 120.60375 * 180.28104 * 13 12 11 15 15 C 1.33923 * 119.85750 * 359.97438 * 14 13 12 16 16 C 1.40517 * 120.96661 * 180.02562 * 15 14 13 17 17 C 1.36124 * 119.74236 * 180.02562 * 16 15 14 18 18 C 1.39334 * 120.94539 * 359.95307 * 17 16 15 19 19 C 1.36121 * 120.92682 * 0.02562 * 18 17 16 20 20 C 1.40515 * 119.73809 * 0.02562 * 19 18 17 21 21 N 1.31932 * 119.75412 * 174.93618 * 12 11 10 22 22 C 1.52991 * 117.51973 * 230.47367 * 9 7 2 23 23 C 1.52997 * 60.00306 * 107.47876 * 22 9 7 24 24 H 0.96998 * 120.00114 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47273 * 279.78612 * 10 9 7 26 26 H 1.09000 * 109.46814 * 159.78497 * 10 9 7 27 27 H 0.97004 * 119.99840 * 5.08956 * 11 10 9 28 28 H 1.07995 * 119.70249 * 0.27064 * 13 12 11 29 29 H 1.08000 * 120.13006 * 0.03043 * 16 15 14 30 30 H 1.08004 * 119.52740 * 179.97438 * 17 16 15 31 31 H 1.07999 * 119.53443 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.13016 * 180.02562 * 19 18 17 33 33 H 1.08999 * 117.50158 * 214.96614 * 22 9 7 34 34 H 1.09003 * 117.50186 * 359.97438 * 22 9 7 35 35 H 1.08997 * 117.50410 * 252.51162 * 23 22 9 36 36 H 1.09006 * 117.51839 * 107.48060 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3951 2.1051 -1.3951 5 1 1.5010 2.6212 0.7992 6 1 3.5937 1.4130 0.5961 7 6 2.0046 -1.1941 -0.0005 8 1 1.4675 -2.1276 -0.0802 9 6 3.5075 -1.1964 0.1102 10 6 4.0644 -1.1306 1.5337 11 7 3.2491 -1.9688 2.4163 12 6 3.4975 -1.9858 3.7805 13 6 4.6023 -1.2858 4.2976 14 7 4.8558 -1.2950 5.5838 15 6 4.0573 -1.9758 6.4159 16 6 4.3070 -2.0012 7.7985 17 6 3.4794 -2.7017 8.6214 18 6 2.3836 -3.3963 8.1133 19 6 2.1108 -3.3937 6.7797 20 6 2.9436 -2.6825 5.8993 21 7 2.6987 -2.6630 4.5831 22 6 4.2907 -2.0154 -0.9177 23 6 4.2981 -0.4872 -0.9912 24 1 -0.4850 0.8400 0.0004 25 1 4.0392 -0.0996 1.8865 26 1 5.0931 -1.4912 1.5384 27 1 2.5356 -2.5120 2.0464 28 1 5.2478 -0.7357 3.6290 29 1 5.1522 -1.4668 8.2066 30 1 3.6748 -2.7192 9.6835 31 1 1.7417 -3.9443 8.7871 32 1 1.2577 -3.9362 6.3999 33 1 5.2028 -2.5074 -0.5798 34 1 3.7190 -2.5532 -1.6741 35 1 3.7312 -0.0193 -1.7960 36 1 5.2148 0.0265 -0.7015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362366583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:33 Heat of formation + Delta-G solvation = 79.146336 kcal Electronic energy + Delta-G solvation = -19526.858508 eV Core-core repulsion = 16590.043969 eV Total energy + Delta-G solvation = -2936.814539 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.21461 -39.44196 -38.32909 -36.20844 -35.01188 -34.25346 -31.44486 -30.74017 -28.08213 -27.06091 -25.93548 -24.04323 -23.25286 -23.06848 -21.08779 -19.52201 -19.29417 -18.09314 -18.00796 -16.93993 -16.34434 -16.26783 -16.17335 -15.59651 -15.17187 -15.04145 -14.84639 -14.66654 -14.42941 -14.01431 -13.13741 -13.06869 -12.74300 -12.72582 -12.59008 -12.50830 -12.49116 -12.13267 -11.99268 -11.47957 -11.07068 -10.78476 -10.54139 -10.23031 -10.06337 -9.58064 -8.56862 -8.30553 -6.38406 -0.61707 -0.14775 1.06860 1.34829 1.38554 1.48574 1.99144 2.12916 2.36188 3.05758 3.15923 3.21992 3.25070 3.34991 3.60527 3.85359 4.02695 4.12581 4.28875 4.33944 4.35702 4.41701 4.51935 4.57995 4.72849 4.91506 4.93887 5.06259 5.09790 5.21179 5.29037 5.34991 5.49643 5.52151 5.67241 5.88646 5.93209 6.27005 6.49947 6.56569 6.71915 7.05313 7.32717 8.84290 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025940 B = 0.004860 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.173966 B = 5759.437632 C = 6008.763759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.310 1.310 6 H -0.215 1.215 7 C -0.481 4.481 8 H 0.033 0.967 9 C -0.043 4.043 10 C 0.157 3.843 11 N -0.680 5.680 12 C 0.368 3.632 13 C 0.035 3.965 14 N -0.406 5.406 15 C -0.016 4.016 16 C -0.069 4.069 17 C -0.123 4.123 18 C -0.068 4.068 19 C -0.135 4.135 20 C 0.119 3.881 21 N -0.554 5.554 22 C -0.161 4.161 23 C -0.184 4.184 24 H 0.262 0.738 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.406 0.594 28 H 0.193 0.807 29 H 0.150 0.850 30 H 0.171 0.829 31 H 0.168 0.832 32 H 0.133 0.867 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.800 -3.383 13.780 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.174 4.174 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.238 1.238 6 H -0.138 1.138 7 C -0.518 4.518 8 H 0.051 0.949 9 C -0.044 4.044 10 C 0.033 3.967 11 N -0.309 5.309 12 C 0.115 3.885 13 C -0.148 4.148 14 N -0.118 5.118 15 C -0.141 4.141 16 C -0.089 4.089 17 C -0.143 4.143 18 C -0.087 4.087 19 C -0.156 4.156 20 C -0.007 4.007 21 N -0.282 5.282 22 C -0.198 4.198 23 C -0.221 4.221 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.243 0.757 28 H 0.209 0.791 29 H 0.168 0.832 30 H 0.188 0.812 31 H 0.186 0.814 32 H 0.151 0.849 33 H 0.128 0.872 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.766 -3.199 13.813 18.424 hybrid contribution -1.029 0.618 -0.965 1.540 sum 10.737 -2.581 12.848 16.942 Atomic orbital electron populations 1.70063 1.08571 1.27867 1.52131 1.25819 0.95048 1.02952 0.93589 0.86019 0.81200 0.78606 0.78521 1.19847 1.23776 1.13751 1.20283 0.89304 0.92532 1.49720 0.94909 1.19442 0.92273 1.04472 0.88256 1.21289 0.93206 0.93427 0.88769 1.44778 1.37591 1.47238 1.01324 1.19918 0.90624 0.90874 0.87101 1.23820 0.96975 1.00939 0.93071 1.68498 1.26321 1.13773 1.03229 1.19792 0.95935 1.01820 0.96521 1.21001 1.00358 0.98422 0.89083 1.21291 0.94366 0.96913 1.01759 1.21385 0.96833 0.96456 0.94043 1.20923 1.00103 1.00938 0.93626 1.19756 0.94862 0.96287 0.89770 1.68283 1.30297 1.25542 1.04076 1.22962 1.01529 0.92979 1.02310 1.23036 1.01935 0.95605 1.01535 0.92873 0.92314 0.89490 0.75669 0.79067 0.83229 0.81155 0.81442 0.84923 0.87246 0.90685 0.90797 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.23 13.96 21.45 0.30 -57.93 16 2 C 0.02 1.33 5.47 84.65 0.46 1.79 16 3 Si 0.93 42.15 25.19 68.60 1.73 43.88 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.31 -14.75 7.11 99.48 0.71 -14.05 16 6 H -0.22 -8.28 5.24 99.48 0.52 -7.76 16 7 C -0.48 -25.19 8.09 25.60 0.21 -24.98 16 8 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 9 C -0.04 -1.72 1.13 -52.93 -0.06 -1.78 16 10 C 0.16 5.42 4.79 86.38 0.41 5.84 16 11 N -0.68 -26.34 5.45 -344.36 -1.88 -28.22 16 12 C 0.37 13.94 7.65 133.69 1.02 14.96 16 13 C 0.04 1.16 10.46 85.39 0.89 2.05 16 14 N -0.41 -13.40 10.45 -187.49 -1.96 -15.36 16 15 C -0.02 -0.53 6.59 40.22 0.26 -0.26 16 16 C -0.07 -1.62 9.98 22.33 0.22 -1.40 16 17 C -0.12 -2.14 9.95 22.04 0.22 -1.92 16 18 C -0.07 -1.28 9.95 22.04 0.22 -1.06 16 19 C -0.14 -3.75 9.98 22.33 0.22 -3.53 16 20 C 0.12 4.17 6.59 40.23 0.27 4.43 16 21 N -0.55 -22.24 10.49 -185.67 -1.95 -24.19 16 22 C -0.16 -5.41 9.88 30.59 0.30 -5.11 16 23 C -0.18 -6.34 7.33 30.59 0.22 -6.12 16 24 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 25 H 0.06 2.04 6.39 -2.39 -0.02 2.02 16 26 H 0.09 2.35 7.77 -2.39 -0.02 2.33 16 27 H 0.41 17.74 7.68 -92.71 -0.71 17.03 16 28 H 0.19 5.03 6.70 -2.91 -0.02 5.01 16 29 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 31 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.11 2.96 8.08 -2.39 -0.02 2.94 16 34 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.07 2.81 7.13 -2.39 -0.02 2.79 16 36 H 0.11 3.10 8.14 -2.38 -0.02 3.08 16 Total: -1.00 -69.27 301.45 1.33 -67.94 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.21 Total: 30.98 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 4.88 Total: -17.10 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -5.48 Total: -125.70 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.73 Total: 43.88 kcal Total: -69.27 1.33 -67.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362366583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.083 kcal (2) G-P(sol) polarization free energy of solvation -69.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds